sp|Q8GUP3|PDS5C_ARATH ----> Sister chromatid cohesion protein PDS5 homolog C
Intron 1 GTAAGTTCAT ... CCCTCATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65.9 | 22.3 | 43 | 23 |
| A2 | 64.86 | 13 | 24 | 20 |
| A3 | 60.77 | 13 | 20 | 22 |
| A4 | 90.91 | 1 | 10 | 10 |
| A5 | 68.42 | 6 | 13 | 5 |
| A6 | 68.19 | 73.3 | 157 | 27 |
| A7 | 68.51 | 84.8 | 184 | 20 |
| A8 | 68.55 | 126.8 | 276 | 33 |
| A9 | 75.78 | 52.3 | 163 | 16 |
| A10 | 64.59 | 59.3 | 108 | 6 |
>TRINITY_DN46225_c0_g3_i5 from sample A10 / Example spliced isoformCTACTAAATCTCCTAGCACCAATCAGCAGTTGGTTGCAAGTACAGATTCGGCAGCAAAAGTATTGAAACGTCCAAAGAGGAAGCTAGATACCAGCAATGTCAGCACACCAAAACCTGTGGATAAAAACAAACCTGCAAATCCAAATGAGTCAAAGCAGATTGAAACTCCTGATGAAAACCAAGATGATGTTCATCGTCCT
AAAAAGATGCAGAAGGTTACTTCCATTCAAGAGTCTACTAAATCTCCTAGCACCAATCAGCAGTTGGTTGCAAGTACAGATTCGGCAGCAAAAGTATTGAAACGTCCAAAGAGGAAGCTAGATACCAGCAATGTCAGCACACCAAAACCTGTGGATAAAAACAAACCTGCAAATCCAAATGAGTCAAAGCAGATTGAAAC
TCCTGATGAAAACCAAGATGATGTTCATCGTCCTAAAAAGATGCAGAAGGTTACTTCCATTCAAGAGTCTACTGAGAAGGATTTACTTCAGGCTGGTGAGAGTACCAAGAGAACTCCAAGAAGTTCTGCAAAGAAGAGCATCCCAGGAGTGGAGAAGACTCCTGGTACAGTAGAAGGAAGTGGGGAAGCTGACAAGTTGC
TTGGACGGAAGATCAAGGTTTGGTGGCCACAGGATAGACAGTTCTATAATGGTGTTGTTGATTCCTATGATTCTAAACTGAAGAAGCACAAAGTAGTATACGTTGATGGGGATGTTGAAGTACTTAATCTCCAGAAGCAGCGTTGGGAGTTTATTGATGACAACCCTGTGACTGAAAAGTCACCAGAAATAATTGCGAGC
TCCAAATCAGTTGTAGACAAGCCGGCAAGGAGGAGGACTACTAAAGGGGAAAGCCCACCAGTAAAAGAGGATATGACAGAATCTTCGGCAAAAAGGGGATCACATTCTTCCAAAACTAGGAAGGATTCTAGATTGCAGTTGGATATGAAGCCTGATGACAATGGGGCATTGGTAAAAAGTGCTGATGCTGGTTTATCTGA
AAAGAGTGCTTCAGAAGTCATTGCAGACACTGTTATGTCTCCAGAAAATACCGATCAACCGACAAGTGGCAGTAGGGGAAGGAAACAAAAGCAAGGAGGGGAGAGCAGAAAGGGTAGACAGGTGACATCTTCGAGTACACCAACAGATGGAACTGTGAAGAAGTCTAAAGTAACTAGAGGAGTAAAAAGTGGAACAGAAC
AGGATAAAACAGGGATTTCATCCGATGGTGGGGCAAGGAACTCAGATGATGAACCTCTGTTGTTTCCCTTAAAATGCAGAACACATGGAGGTCACGCTCACGATCTGAACAGTAAGATTTGGGGATAGAGCTTTGTCTTATATTGGTAGGAGGAATAGGCTCATGTTATCAAATCCTATTTGGTTGGCAACCATTTCTGT
TTGACACAGTTTCATTAGATGTCCCGATGTCCTGATTCACCTCATTATAAATTCCAATCATTTATAGCGATCCCTTGTACATTATAAGCACTTCATGTCTGTTGCCTCTCAAGTGATTGCAGTGGAGTCAGTGATGAAGTGTAAGTGATTCCGTTTCCGTATTGGTTTTGTCCCTTTATTTGGTTCTGTAATTGATTGAT
AGGCATTATTTATTTTTTAACTAGAG
>TRINITY_DN46225_c0_g3_i1 from sample A10 / Example unspliced isoform:CTACTAAATCTCCTAGCACCAATCAGCAGTTGGTTGCAAGTACAGATTCGGCAGCAAAAGTATTGAAACGTCCAAAGAGGAAGCTAGATACCAGCAATGTCAGCACACCAAAACCTGTGGATAAAAACAAACCTGCAAATCCAAATGAGTCAAAGCAGATTGAAACTCCTGATGAAAACCAAGATGATGTTCATCGTCCT
AAAAAGATGCAGAAGGTTACTTCCATTCAAGAGTCTACTAAATCTCCTAGCACCAATCAGCAGTTGGTTGCAAGTACAGATTCGGCAGCAAAAGTATTGAAACGTCCAAAGAGGAAGCTAGATACCAGCAATGTCAGCACACCAAAACCTGTGGATAAAAACAAACCTGCAAATCCAAATGAGTCAAAGCAGATTGAAAC
TCCTGATGAAAACCAAGATGATGTTCATCGTCCTAAAAAGATGCAGAAGGTTACTTCCATTCAAGAGTCTACTGAGAAGGATTTACTTCAGGCTGGTGAGAGTACCAAGAGAACTCCAAGAAGTTCTGCAAAGAAGAGCATCCCAGGAGTGGAGAAGACTCCTGGTACAGTAGAAGGAAGTGGGGAAGCTGACAAGTTGC
TTGGACGGAAGATCAAGGTTTGGTGGCCACAGGATAGACAGTTCTATAATGGTGTTGTTGATTCCTATGATTCTAAACTGAAGAAGCACAAAGTAGTATACGTTGATGGGGATGTTGAAGTACTTAATCTCCAGAAGCAGCGTTGGGAGTTTATTGATGACAACCCTGTGACTGAAAAGTCACCAGAAATAATTGCGAGC
TCCAAATCAGTTGTAGACAAGCCGGCAAGGAGGAGGACTACTAAAGGGGAAAGCCCACCAGTAAAAGAGGATATGACAGAATCTTCGGCAAAAAGGGGATCACATTCTTCCAAAACTAGGAAGGATTCTAGATTGCAGTTGGATATGAAGCCTGATGACAATGGGGCATTGGTAAAAAGTGCTGATGCTGGTTTATCTGA
AAAGAGTGCTTCAGAAGTCATTGCAGACACTGTTATGTCTCCAGAAAATACCGATCAACCGACAAGTGGCAGTAGGGGAAGGAAACAAAAGCAAGGAGGGGAGAGCAGAAAGGGTAGACAGGTGACATCTTCGAGTACACCAACAGATGGAACTGTGAAGAAGTCTAAAGTAACTAGAGGAGTAAAAAGTGGAACAGAAC
AGGATAAAACAGGGATTTCATCCGATGGTGGGGCAAGGAACTCAGATGATGAACCTCTGGTATATTAAAATTTGTAACAGTCTTTTTCTTTCTATTTTTCCAAGGATTGTATGATATCGGCACCTCTCAAGTTGTTTCCCTTAAAATGCAGAACACATGGAGGTCACGCTCACGATCTGAACAGTAAGATTTGGGGATAG
AGCTTTGTCTTATATTGGTAGGAGGAATAGGCTCATGTTATCAAATCCTATTTGGTTGGCAACCATTTCTGTTTGACACAGTTTCATTAGATGTCCCGATGTCCTGATTCACCTCATTATAAATTCCAATCATTTATAgtaagttcatgatccttgtactatgaatgccacggcggccatgatctgtgtatgcttttttt
cttttgcacaggctcttgcagttgttctacaggcgtgttcttataaatacaatttgcagtattcttattttttatgagctgtatttaacatcaccctctttcatttaattgttgtttcctctttgatcatatcatttgcttcctccatggctagattgtgtcagtacatagatacacttggaagcgatagctctttgatc
taataatagctacattctgcattttttgcctcgtgaactgaggacattgtttattatgtattaaaggatttgtggaccataggtattcatgttggatcatttttgcctgtcgaaagtctagctagcattactcgttcaagaccaggtgttttatcatatatgatattttcatattcagtgactttactatgctttttctg
tttgaaattaattcctttttctcttagaacagtttatctctttggaatcattttggtagtttgtatacaatgtagtgcacataagaaatacttgaccaccttgttcagatttgcgtgttgttacgaacataatttcggactatttacggttgagattacgatggcctatggaaacaaatgtattttaatgttttccctca
tcagGCGATCCCTTGTACATTATAAGCACTTCATGTCTGTTGCCTCTCAAGTGATTGCAGTGGAGTCAGTGATGAAGTGGCAAAGTTGTTTTCTTGCAAACACCTAAAAAACAGTTCTACATCTTGATGACGTGGGCAGTTGAGTAAAATAATTCTTTTTTATTTAACAGCCAAGTTTGTGAATTTATTGTTTCTATACA
TGGAATGGTTTTTATATATTGTATCTGCATCTTCCGCATGCTGTTTACATACTCTTTCTGGAAGTAGTATGGATTCTATTTTTTGTCATTTACGATATTTTCTAAGCTAAATGTATAGCCTAGGTATACATACGATTAGTTTTTCA
Intron 2 GTATATTAAA ... ACCTCTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74.45 | 13.5 | 42 | 36 |
| A2 | 78.05 | 8 | 27 | 22 |
| A3 | 60.74 | 20.5 | 36 | 24 |
| A4 | 76.28 | 7 | 27 | 16 |
| A5 | 66.82 | 7 | 16 | 12 |
| A6 | 77.86 | 21.5 | 60 | 77 |
| A7 | 57.11 | 63 | 92 | 64 |
| A8 | 62.09 | 85 | 138 | 117 |
| A9 | 65.37 | 57 | 101 | 92 |
| A10 | 53.9 | 53 | 57 | 51 |
>TRINITY_DN46225_c0_g3_i7 from sample A10 / Example spliced isoformCAGCAGTTGGTTGCAAGTACAGATTCGGCAGCAAAAGTATTGAAACGTCCAAAGAGGAAGCTAGATACCAGCAATGTCAGCACACCAAAACCTGTGGATAAAAACAAACCTGCAAATCCAAATGAGTCAAAGCAGATTGAAACTCCTGATGAAAACCAAGATGATGTTCATCGTCCTAAAAAGATGCAGAAGGTTACTTC
CATTCAAGAGTCTACTGAGAAGGATTTACTTCAGGCTGGTGAGAGTACCAAGAGAACTCCAAGAAGTTCTGCAAAGAAGAGCATCCCAGGAGTGGAGAAGACTCCTGGTACAGTAGAAGGAAGTGGGGAAGCTGACAAGTTGCTTGGACGGAAGATCAAGGTTTGGTGGCCACAGGATAGACAGTTCTATAATGGTGTTG
TTGATTCCTATGATTCTAAACTGAAGAAGCACAAAGTAGTATACGTTGATGGGGATGTTGAAGTACTTAATCTCCAGAAGCAGCGTTGGGAGTTTATTGATGACAACCCTGTGACTGAAAAGTCACCAGAAATAATTGCGAGCTCCAAATCAGTTGTAGACAAGCCGGCAAGGAGGAGGACTACTAAAGGGGAAAGCCCA
CCAGTAAAAGAGGATATGACAGAATCTTCGGCAAAAAGGGGATCACATTCTTCCAAAACTAGGAAGGATTCTAGATTGCAGTTGGATATGAAGCCTGATGACAATGGGGCATTGGTAAAAAGTGCTGATGCTGGTTTATCTGAAAAGAGTGCTTCAGAAGTCATTGCAGACACTGTTATGTCTCCAGAAAATACCGATCA
ACCGACAAGTGGCAGTAGGGGAAGGAAACAAAAGCAAGGAGGGGAGAGCAGAAAGGGTAGACAGGTGACATCTTCGAGTACACCAACAGATGGAACTGTGAAGAAGTCTAAAGTAACTAGAGGAGTAAAAAGTGGAACAGAACAGGATAAAACAGGGATTTCATCCGATGGTGGGGCAAGGAACTCAGATGATGAACCTC
TGTTGTTTCCCTTAAAATGCAGAACACATGGAGGTCACGCTCACGATCTGAACAGCGATCCCTTGTACATTATAAGCACTTCATGTCTGTTGCCTCTCAAGTGATTGCAGTGGAGTCAGTGATGAAGTGGCAAAGTTGTTTTCTTGCAAACACCTAAAAAACAGTTCTACATCTTGATGACGTGGGCAGTTGAGTAAAAT
AATTCTTTTTTATTTAACAGCCAAGTTTGTGAATTTATTGTTTCTATACATGGAATGGTTTTTATATATTGTATCTGCATCTTCCGCATGCTGTTTACATACTCTTTCTGGAAGTAGTATGGATTCTATTTTTTGTCATTTACGATATTTTCTAAGCTAAATGTATAGCCTAGGTATACATACGATTAGTTTTTCA
>TRINITY_DN46225_c0_g3_i1 from sample A10 / Example unspliced isoform:CTACTAAATCTCCTAGCACCAATCAGCAGTTGGTTGCAAGTACAGATTCGGCAGCAAAAGTATTGAAACGTCCAAAGAGGAAGCTAGATACCAGCAATGTCAGCACACCAAAACCTGTGGATAAAAACAAACCTGCAAATCCAAATGAGTCAAAGCAGATTGAAACTCCTGATGAAAACCAAGATGATGTTCATCGTCCT
AAAAAGATGCAGAAGGTTACTTCCATTCAAGAGTCTACTAAATCTCCTAGCACCAATCAGCAGTTGGTTGCAAGTACAGATTCGGCAGCAAAAGTATTGAAACGTCCAAAGAGGAAGCTAGATACCAGCAATGTCAGCACACCAAAACCTGTGGATAAAAACAAACCTGCAAATCCAAATGAGTCAAAGCAGATTGAAAC
TCCTGATGAAAACCAAGATGATGTTCATCGTCCTAAAAAGATGCAGAAGGTTACTTCCATTCAAGAGTCTACTGAGAAGGATTTACTTCAGGCTGGTGAGAGTACCAAGAGAACTCCAAGAAGTTCTGCAAAGAAGAGCATCCCAGGAGTGGAGAAGACTCCTGGTACAGTAGAAGGAAGTGGGGAAGCTGACAAGTTGC
TTGGACGGAAGATCAAGGTTTGGTGGCCACAGGATAGACAGTTCTATAATGGTGTTGTTGATTCCTATGATTCTAAACTGAAGAAGCACAAAGTAGTATACGTTGATGGGGATGTTGAAGTACTTAATCTCCAGAAGCAGCGTTGGGAGTTTATTGATGACAACCCTGTGACTGAAAAGTCACCAGAAATAATTGCGAGC
TCCAAATCAGTTGTAGACAAGCCGGCAAGGAGGAGGACTACTAAAGGGGAAAGCCCACCAGTAAAAGAGGATATGACAGAATCTTCGGCAAAAAGGGGATCACATTCTTCCAAAACTAGGAAGGATTCTAGATTGCAGTTGGATATGAAGCCTGATGACAATGGGGCATTGGTAAAAAGTGCTGATGCTGGTTTATCTGA
AAAGAGTGCTTCAGAAGTCATTGCAGACACTGTTATGTCTCCAGAAAATACCGATCAACCGACAAGTGGCAGTAGGGGAAGGAAACAAAAGCAAGGAGGGGAGAGCAGAAAGGGTAGACAGGTGACATCTTCGAGTACACCAACAGATGGAACTGTGAAGAAGTCTAAAGTAACTAGAGGAGTAAAAAGTGGAACAGAAC
AGGATAAAACAGGGATTTCATCCGATGGTGGGGCAAGGAACTCAGATGATGAACCTCTGgtatattaaaatttgtaacagtctttttctttctatttttccaaggattgtatgatatcggcacctctcaagTTGTTTCCCTTAAAATGCAGAACACATGGAGGTCACGCTCACGATCTGAACAGTAAGATTTGGGGATAG
AGCTTTGTCTTATATTGGTAGGAGGAATAGGCTCATGTTATCAAATCCTATTTGGTTGGCAACCATTTCTGTTTGACACAGTTTCATTAGATGTCCCGATGTCCTGATTCACCTCATTATAAATTCCAATCATTTATAGTAAGTTCATGATCCTTGTACTATGAATGCCACGGCGGCCATGATCTGTGTATGCTTTTTTT
CTTTTGCACAGGCTCTTGCAGTTGTTCTACAGGCGTGTTCTTATAAATACAATTTGCAGTATTCTTATTTTTTATGAGCTGTATTTAACATCACCCTCTTTCATTTAATTGTTGTTTCCTCTTTGATCATATCATTTGCTTCCTCCATGGCTAGATTGTGTCAGTACATAGATACACTTGGAAGCGATAGCTCTTTGATC
TAATAATAGCTACATTCTGCATTTTTTGCCTCGTGAACTGAGGACATTGTTTATTATGTATTAAAGGATTTGTGGACCATAGGTATTCATGTTGGATCATTTTTGCCTGTCGAAAGTCTAGCTAGCATTACTCGTTCAAGACCAGGTGTTTTATCATATATGATATTTTCATATTCAGTGACTTTACTATGCTTTTTCTG
TTTGAAATTAATTCCTTTTTCTCTTAGAACAGTTTATCTCTTTGGAATCATTTTGGTAGTTTGTATACAATGTAGTGCACATAAGAAATACTTGACCACCTTGTTCAGATTTGCGTGTTGTTACGAACATAATTTCGGACTATTTACGGTTGAGATTACGATGGCCTATGGAAACAAATGTATTTTAATGTTTTCCCTCA
TCAGGCGATCCCTTGTACATTATAAGCACTTCATGTCTGTTGCCTCTCAAGTGATTGCAGTGGAGTCAGTGATGAAGTGGCAAAGTTGTTTTCTTGCAAACACCTAAAAAACAGTTCTACATCTTGATGACGTGGGCAGTTGAGTAAAATAATTCTTTTTTATTTAACAGCCAAGTTTGTGAATTTATTGTTTCTATACA
TGGAATGGTTTTTATATATTGTATCTGCATCTTCCGCATGCTGTTTACATACTCTTTCTGGAAGTAGTATGGATTCTATTTTTTGTCATTTACGATATTTTCTAAGCTAAATGTATAGCCTAGGTATACATACGATTAGTTTTTCA
Intron 3 GTATATTAAA ... TAAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.94 | 14.6 | 42 | 36 |
| A2 | 65.84 | 13 | 27 | 22 |
| A3 | 59.94 | 23.4 | 36 | 31 |
| A4 | 68.29 | 11.1 | 27 | 18 |
| A5 | 68.38 | 6.7 | 16 | 13 |
| A6 | 71.42 | 33.3 | 60 | 94 |
| A7 | 51.04 | 99.7 | 92 | 103 |
| A8 | 54.34 | 140.6 | 138 | 173 |
| A9 | 56.77 | 90.6 | 101 | 119 |
| A10 | 47.65 | 79.1 | 57 | 79 |
>TRINITY_DN46225_c0_g3_i10 from sample A10 / Example spliced isoformCAGCAGTTGGTTGCAAGTACAGATTCGGCAGCAAAAGTATTGAAACGTCCAAAGAGGAAGCTAGATACCAGCAATGTCAGCACACCAAAACCTGTGGATAAAAACAAACCTGCAAATCCAAATGAGTCAAAGCAGATTGAAACTCCTGATGAAAACCAAGATGATGTTCATCGTCCTAAAAAGATGCAGAAGGTTACTTC
CATTCAAGAGTCTACTGAGAAGGATTTACTTCAGGCTGGTGAGAGTACCAAGAGAACTCCAAGAAGTTCTGCAAAGAAGAGCATCCCAGGAGTGGAGAAGACTCCTGGTACAGTAGAAGGAAGTGGGGAAGCTGACAAGTTGCTTGGACGGAAGATCAAGGTTTGGTGGCCACAGGATAGACAGTTCTATAATGGTGTTG
TTGATTCCTATGATTCTAAACTGAAGAAGCACAAAGTAGTATACGTTGATGGGGATGTTGAAGTACTTAATCTCCAGAAGCAGCGTTGGGAGTTTATTGATGACAACCCTGTGACTGAAAAGTCACCAGAAATAATTGCGAGCTCCAAATCAGTTGTAGACAAGCCGGCAAGGAGGAGGACTACTAAAGGGGAAAGCCCA
CCAGTAAAAGAGGATATGACAGAATCTTCGGCAAAAAGGGGATCACATTCTTCCAAAACTAGGAAGGATTCTAGATTGCAGTTGGATATGAAGCCTGATGACAATGGGGCATTGGTAAAAAGTGCTGATGCTGGTTTATCTGAAAAGAGTGCTTCAGAAGTCATTGCAGACACTGTTATGTCTCCAGAAAATACCGATCA
ACCGACAAGTGGCAGTAGGGGAAGGAAACAAAAGCAAGGAGGGGAGAGCAGAAAGGGTAGACAGGTGACATCTTCGAGTACACCAACAGATGGAACTGTGAAGAAGTCTAAAGTAACTAGAGGAGTAAAAAGTGGAACAGAACAGGATAAAACAGGGATTTCATCCGATGGTGGGGCAAGGAACTCAGATGATGAACCTC
TGAACACATGGAGGTCACGCTCACGATCTGAACAGCGATCCCTTGTACATTATAAGCACTTCATGTCTGTTGCCTCTCAAGTGATTGCAGTGGAGTCAGTGATGAAGTGGCAAAGTTGTTTTCTTGCAAACACCTAAAAAACAGTTCTACATCTTGATGACGTGGGCAGTTGAGTAAAATAATTCTTTTTTATTTAACAG
CCAAGTTTGTGAATTTATTGTTTCTATACATGGAATGGTTTTTATATATTGTATCTGCATCTTCCGCATGCTGTTTACATACTCTTTCTGGAAGTAGTATGGATTCTATTTTTTGTCATTTACGATATTTTCTAAGCTAAATGTATAGCCTAGGTATACATACGATTAGTTTTTCA
>TRINITY_DN46225_c0_g3_i2 from sample A10 / Example unspliced isoform:CTACTAAATCTCCTAGCACCAATCAGCAGTTGGTTGCAAGTACAGATTCGGCAGCAAAAGTATTGAAACGTCCAAAGAGGAAGCTAGATACCAGCAATGTCAGCACACCAAAACCTGTGGATAAAAACAAACCTGCAAATCCAAATGAGTCAAAGCAGATTGAAACTCCTGATGAAAACCAAGATGATGTTCATCGTCCT
AAAAAGATGCAGAAGGTTACTTCCATTCAAGAGTCTACTAAATCTCCTAGCACCAATCAGCAGTTGGTTGCAAGTACAGATTCGGCAGCAAAAGTATTGAAACGTCCAAAGAGGAAGCTAGATACCAGCAATGTCAGCACACCAAAACCTGTGGATAAAAACAAACCTGCAAATCCAAATGAGTCAAAGCAGATTGAAAC
TCCTGATGAAAACCAAGATGATGTTCATCGTCCTAAAAAGATGCAGAAGGTTACTTCCATTCAAGAGTCTACTGAGAAGGATTTACTTCAGGCTGGTGAGAGTACCAAGAGAACTCCAAGAAGTTCTGCAAAGAAGAGCATCCCAGGAGTGGAGAAGACTCCTGGTACAGTAGAAGGAAGTGGGGAAGCTGACAAGTTGC
TTGGACGGAAGATCAAGGTTTGGTGGCCACAGGATAGACAGTTCTATAATGGTGTTGTTGATTCCTATGATTCTAAACTGAAGAAGCACAAAGTAGTATACGTTGATGGGGATGTTGAAGTACTTAATCTCCAGAAGCAGCGTTGGGAGTTTATTGATGACAACCCTGTGACTGAAAAGTCACCAGAAATAATTGCGAGC
TCCAAATCAGTTGTAGACAAGCCGGCAAGGAGGAGGACTACTAAAGGGGAAAGCCCACCAGTAAAAGAGGATATGACAGAATCTTCGGCAAAAAGGGGATCACATTCTTCCAAAACTAGGAAGGATTCTAGATTGCAGTTGGATATGAAGCCTGATGACAATGGGGCATTGGTAAAAAGTGCTGATGCTGGTTTATCTGA
AAAGAGTGCTTCAGAAGTCATTGCAGACACTGTTATGTCTCCAGAAAATACCGATCAACCGACAAGTGGCAGTAGGGGAAGGAAACAAAAGCAAGGAGGGGAGAGCAGAAAGGGTAGACAGGTGACATCTTCGAGTACACCAACAGATGGAACTGTGAAGAAGTCTAAAGTAACTAGAGGAGTAAAAAGTGGAACAGAAC
AGGATAAAACAGGGATTTCATCCGATGGTGGGGCAAGGAACTCAGATGATGAACCTCTGgtatattaaaatttgtaacagtctttttctttctatttttccaaggattgtatgatatcggcacctctcaagttgtttcccttaaaatgcagAACACATGGAGGTCACGCTCACGATCTGAACAGTAAGATTTGGGGATAG
AGCTTTGTCTTATATTGGTAGGAGGAATAGGCTCATGTTATCAAATCCTATTTGGTTGGCAACCATTTCTGTTTGACACAGTTTCATTAGATGTCCCGATGTCCTGATTCACCTCATTATAAATTCCAATCATTTATAGCGATCCCTTGTACATTATAAGCACTTCATGTCTGTTGCCTCTCAAGTGATTGCAGTGGAGT
CAGTGATGAAGTGTAAGTGATTCCGTTTCCGTATTGGTTTTGTCCCTTTATTTGGTTCTGTAATTGATTGATAGGCATTATTTATTTTTTAACTAGAG
Intron 4 GTAAGATTTG ... CCCTCATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.47 | 13 | 21.5 | 23 |
| A2 | 86.66 | 3 | 16.5 | 20 |
| A3 | 80.78 | 6.5 | 28 | 22 |
| A4 | 100 | 0 | 17 | 10 |
| A5 | 100 | 0 | 8 | 5 |
| A6 | 89.32 | 9.5 | 83.5 | 27 |
| A7 | 79.63 | 35 | 136.5 | 20 |
| A8 | 86.53 | 34 | 217.5 | 33 |
| A9 | 87.34 | 18.5 | 127 | 16 |
| A10 | 83.39 | 18 | 87.5 | 6 |
>TRINITY_DN46225_c0_g3_i10 from sample A10 / Example spliced isoformCAGCAGTTGGTTGCAAGTACAGATTCGGCAGCAAAAGTATTGAAACGTCCAAAGAGGAAGCTAGATACCAGCAATGTCAGCACACCAAAACCTGTGGATAAAAACAAACCTGCAAATCCAAATGAGTCAAAGCAGATTGAAACTCCTGATGAAAACCAAGATGATGTTCATCGTCCTAAAAAGATGCAGAAGGTTACTTC
CATTCAAGAGTCTACTGAGAAGGATTTACTTCAGGCTGGTGAGAGTACCAAGAGAACTCCAAGAAGTTCTGCAAAGAAGAGCATCCCAGGAGTGGAGAAGACTCCTGGTACAGTAGAAGGAAGTGGGGAAGCTGACAAGTTGCTTGGACGGAAGATCAAGGTTTGGTGGCCACAGGATAGACAGTTCTATAATGGTGTTG
TTGATTCCTATGATTCTAAACTGAAGAAGCACAAAGTAGTATACGTTGATGGGGATGTTGAAGTACTTAATCTCCAGAAGCAGCGTTGGGAGTTTATTGATGACAACCCTGTGACTGAAAAGTCACCAGAAATAATTGCGAGCTCCAAATCAGTTGTAGACAAGCCGGCAAGGAGGAGGACTACTAAAGGGGAAAGCCCA
CCAGTAAAAGAGGATATGACAGAATCTTCGGCAAAAAGGGGATCACATTCTTCCAAAACTAGGAAGGATTCTAGATTGCAGTTGGATATGAAGCCTGATGACAATGGGGCATTGGTAAAAAGTGCTGATGCTGGTTTATCTGAAAAGAGTGCTTCAGAAGTCATTGCAGACACTGTTATGTCTCCAGAAAATACCGATCA
ACCGACAAGTGGCAGTAGGGGAAGGAAACAAAAGCAAGGAGGGGAGAGCAGAAAGGGTAGACAGGTGACATCTTCGAGTACACCAACAGATGGAACTGTGAAGAAGTCTAAAGTAACTAGAGGAGTAAAAAGTGGAACAGAACAGGATAAAACAGGGATTTCATCCGATGGTGGGGCAAGGAACTCAGATGATGAACCTC
TGAACACATGGAGGTCACGCTCACGATCTGAACAGCGATCCCTTGTACATTATAAGCACTTCATGTCTGTTGCCTCTCAAGTGATTGCAGTGGAGTCAGTGATGAAGTGGCAAAGTTGTTTTCTTGCAAACACCTAAAAAACAGTTCTACATCTTGATGACGTGGGCAGTTGAGTAAAATAATTCTTTTTTATTTAACAG
CCAAGTTTGTGAATTTATTGTTTCTATACATGGAATGGTTTTTATATATTGTATCTGCATCTTCCGCATGCTGTTTACATACTCTTTCTGGAAGTAGTATGGATTCTATTTTTTGTCATTTACGATATTTTCTAAGCTAAATGTATAGCCTAGGTATACATACGATTAGTTTTTCA
>TRINITY_DN46225_c0_g3_i3 from sample A10 / Example unspliced isoform:CTACTAAATCTCCTAGCACCAATCAGCAGTTGGTTGCAAGTACAGATTCGGCAGCAAAAGTATTGAAACGTCCAAAGAGGAAGCTAGATACCAGCAATGTCAGCACACCAAAACCTGTGGATAAAAACAAACCTGCAAATCCAAATGAGTCAAAGCAGATTGAAACTCCTGATGAAAACCAAGATGATGTTCATCGTCCT
AAAAAGATGCAGAAGGTTACTTCCATTCAAGAGTCTACTAAATCTCCTAGCACCAATCAGCAGTTGGTTGCAAGTACAGATTCGGCAGCAAAAGTATTGAAACGTCCAAAGAGGAAGCTAGATACCAGCAATGTCAGCACACCAAAACCTGTGGATAAAAACAAACCTGCAAATCCAAATGAGTCAAAGCAGATTGAAAC
TCCTGATGAAAACCAAGATGATGTTCATCGTCCTAAAAAGATGCAGAAGGTTACTTCCATTCAAGAGTCTACTGAGAAGGATTTACTTCAGGCTGGTGAGAGTACCAAGAGAACTCCAAGAAGTTCTGCAAAGAAGAGCATCCCAGGAGTGGAGAAGACTCCTGGTACAGTAGAAGGAAGTGGGGAAGCTGACAAGTTGC
TTGGACGGAAGATCAAGGTTTGGTGGCCACAGGATAGACAGTTCTATAATGGTGTTGTTGATTCCTATGATTCTAAACTGAAGAAGCACAAAGTAGTATACGTTGATGGGGATGTTGAAGTACTTAATCTCCAGAAGCAGCGTTGGGAGTTTATTGATGACAACCCTGTGACTGAAAAGTCACCAGAAATAATTGCGAGC
TCCAAATCAGTTGTAGACAAGCCGGCAAGGAGGAGGACTACTAAAGGGGAAAGCCCACCAGTAAAAGAGGATATGACAGAATCTTCGGCAAAAAGGGGATCACATTCTTCCAAAACTAGGAAGGATTCTAGATTGCAGTTGGATATGAAGCCTGATGACAATGGGGCATTGGTAAAAAGTGCTGATGCTGGTTTATCTGA
AAAGAGTGCTTCAGAAGTCATTGCAGACACTGTTATGTCTCCAGAAAATACCGATCAACCGACAAGTGGCAGTAGGGGAAGGAAACAAAAGCAAGGAGGGGAGAGCAGAAAGGGTAGACAGGTGACATCTTCGAGTACACCAACAGATGGAACTGTGAAGAAGTCTAAAGTAACTAGAGGAGTAAAAAGTGGAACAGAAC
AGGATAAAACAGGGATTTCATCCGATGGTGGGGCAAGGAACTCAGATGATGAACCTCTGAACACATGGAGGTCACGCTCACGATCTGAACAgtaagatttggggatagagctttgtcttatattggtaggaggaataggctcatgttatcaaatcctatttggttggcaaccatttctgtttgacacagtttcattagat
gtcccgatgtcctgattcacctcattataaattccaatcatttatagtaagttcatgatccttgtactatgaatgccacggcggccatgatctgtgtatgctttttttcttttgcacaggctcttgcagttgttctacaggcgtgttcttataaatacaatttgcagtattcttattttttatgagctgtatttaacatc
accctctttcatttaattgttgtttcctctttgatcatatcatttgcttcctccatggctagattgtgtcagtacatagatacacttggaagcgatagctctttgatctaataatagctacattctgcattttttgcctcgtgaactgaggacattgtttattatgtattaaaggatttgtggaccataggtattcatgt
tggatcatttttgcctgtcgaaagtctagctagcattactcgttcaagaccaggtgttttatcatatatgatattttcatattcagtgactttactatgctttttctgtttgaaattaattcctttttctcttagaacagtttatctctttggaatcattttggtagtttgtatacaatgtagtgcacataagaaatact
tgaccaccttgttcagatttgcgtgttgttacgaacataatttcggactatttacggttgagattacgatggcctatggaaacaaatgtattttaatgttttccctcatcagGCGATCCCTTGTACATTATAAGCACTTCATGTCTGTTGCCTCTCAAGTGATTGCAGTGGAGTCAGTGATGAAGTGGCAAAGTTGTTTT
CTTGCAAACACCTAAAAAACAGTTCTACATCTTGATGACGTGGGCAGTTGAGTAAAATAATTCTTTTTTATTTAACAGCCAAGTTTGTGAATTTATTGTTTCTATACATGGAATGGTTTTTATATATTGTATCTGCATCTTCCGCATGCTGTTTACATACTCTTTCTGGAAGTAGTATGGATTCTATTTTTTGTCATTTA
CGATATTTTCTAAGCTAAATGTATAGCCTAGGTATACATACGATTAGTTTTTCA