sp|Q9FGY4|FB341_ARATH ----> F-box protein At5g49610

Intron 1 GTACCTGCGT ... TATGATCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	66.67	1	4	0
A2	88.89	1	11	5
A3	81.82	2	13	5
A4	60	1	2	1
A5	100	0	2	0
A6	65.15	23	33	53
A7	68.42	21	49	42
A8	73.86	23	70	60
A9	65.67	23	27	61
A10	78.08	8	38	19

>TRINITY_DN46105_c0_g3_i1 from sample A8 / Example spliced isoform

GAAAGTCTGCTCTAAGCCATCATCTCTTTATTTAAGTGGATGCCATGGGCGAGTGGTGTTAATACAGAAGGGAGAGAAACTTGCCTGTATGCGCATGTGGAGGTTAAATGAAGGCCAAGGCGCTGCAGAATGGTGTGAACTCCATGCTATATGGGGCCTAAACCGCAATAGGTTTTATTCGGTGGTAGCAAACAGCGGGT
GGGCAATGATGGTTGATAGGGGAAAGCAAATATATGTGTGCAACCCAGAGCGAAAATTGACCAAGAAATTTTCATTACGTGAGCGGCTTGGCAGATCGGAAGAATTGTTTATACAGTTTCAGTCAGCCTTCGAATCCAACAACGTTTGGTGGCCTTAGGGAGTGAAAAGTTTTAATCAAATAAATGATCTCTCATCAAGA
AAGCTTCTATCAGATACTGAAGAGTTCTTTTCGATATGGAGTTTTGAATAAGATGAAATTATCAGAAAAACTGATCATATTGTATGTATGATTTCTCGATTCGATTTCAATATGTAAGAATTTTGCAACTCAAATCTTTTAGTGAACTCTTCCCATTATCATTGGAAAGACAAAGAACCACAAGGGTACAACATTCTTAT
CCATAAATCATACAGTAAGATCACTGTATTCTTGCCTACGATCAGTTTATTCTTGCTTAGAGAGCTACAGAAGAATTTTGTTGCTGAAACTTTAAAATTTATATTACTTTAAGAATTGGTTTTGCTTCGAATCTATATATATTGCCGAGTCTGTAATAAAGTCAGTGGTTACTCTGTTGCGATTTGCTGCAGCTAAGAAC
TGTTTTCGTCTAGTTGCCCCAAGATGGATTCCATTGCCTTCACAACTTGGTGAATGATACTGCTGGTTCTGTTCTCCGCCTCTTTAATCTCTTGTTTCGTTTACTGAAGACTTTTCATCAATCAATCTTGATTCTACTCCTCG

>TRINITY_DN46105_c0_g3_i3 from sample A8 / Example unspliced isoform:

GAGATATGTTGGATCTTTCCATAGGCAATCCTGCTACCAGAACCTGGAGACGACTCCCTCGCCCTGCACATGTTAACCCAGATTGGGATTTCATTGCAATGACCTTCGATTCTACCTCGAGGCGTTGCACTATCCTGCTGGGTGAAAATAATGCTGATCGATCTCAATCAGGAAGTGAAAATAATGCTGATCGATCTCAA
TCAGGAAGTGGGAATTCAATGGTGCTGGAAACTTACGATTCAGAGTCCAATGCATGGACTGGGGTTTCCAGGGAAGCCCCCATCTTCATTCAACCTCATGGCAAAGGTCTCTATTCCAAAGGAAACTTTTACTGGATAATCAAAGGGAATTTCATCTATTTCATGGTAGCATTCGCTATTGCAGAGAAGAGTTGGACAGA
AATTACACTACCAGAGGGTTGCAGGAAAGTCTGCTCTAAGCCATCATCTCTTTATTTAAGTGGATGCCATGGGCGAGTGGTGTTAATACAGAAGGGAGAGAAACTTGCCTGTATGCGCATGTGGAGGTTAAATGAAGGCCAAGGCGCTGCAGAATGGTGTGAACTCCATGCTATATGGGGCCTAAACCGCAATAGGTTTT
ATTCGGTGGTAGCAAACAGCGGGTGGGCAATGATGGTTGATAGGGGAAAGCAAATATATGTGTGCAACCCAGAGCGAAAATTGACCAAGAAATTTTCATTACGTGAGCGGCTTGGCAGATCGGAAGAATTGTTTATACAGTTTCAGTCAGCCTTCGAATCCAACAACGTTTGGTGGCCTTAGGGAGTGAAAAGTTTTAAT
CAAATAAATGATCTCTCATCAAGAAAGgtacctgcgtttcacactaattgactcatagtctgtaggaccggggttttgcatgaagctttcaagtttacttttgatgtatgaagcatttaaatgttacgttcaataaatagtaatactctcaaccttcttttttttcaaacagaaacaaatgttgtattatgccgtgttga
ctggttttacaagtgaacctttatgatccagCTTCTATCAGATACTGAAGAGTTCTTTTCGATATGGAGTTTTGAATAAGATGAAATTATCAGAAAAACTGATCATATTGTATGTATGATTTCTCGATTCGATTTCAATATGTAAGAATTTTGCAACTCAAATCTTTTAGTGAACTCTTCCCATTATCATTGGAAAGACA
AAGAACCACAAGGGTACAACATTCTTATCCATAAATCATACAGTAAGATCACTGTATTCTTGCCTACGATCAGTTTATTCTTGCTTAGAGAGCTACAGAAGAATTTTGTTGCTGAAACTTTAAAATTTATATTACTTTAAGAATTGGTTTTGCTTCGAATCTATATATATTGCCGAGTCTGTAATAAAGTCAGTGGTTAC
TCTGTTGCGATTTGCTGCAGCTAAGAACTGTTTTCGTCTAGTTGCCCCAAGATGGATTCCATTGCCTTCACAACTTGGTGAATGATACTGCTGGTTCTGTTCTCCGCCTCTTTAATCTCTTGTTTCGTTTACTGAAGACTTTTCATCAATCAATCTTGATTCTACTCCTCG

Intron 2 GTACCTGCGT ... TTTCAAACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	21.21	13	4	3
A2	68.75	5	11	11
A3	64.29	5	13	5
A4	71.43	1	2	3
A5	33.33	2	2	0
A6	58.33	30	33	51
A7	60.53	30	49	43
A8	59.48	47	70	68
A9	59.26	33	27	69
A10	55.93	26	38	28

>TRINITY_DN46105_c0_g3_i4 from sample A8 / Example spliced isoform

GAGATATGTTGGATCTTTCCATAGGCAATCCTGCTACCAGAACCTGGAGACGACTCCCTCGCCCTGCACATGTTAACCCAGATTGGGATTTCATTGCAATGACCTTCGATTCTACCTCGAGGCGTTGCACTATCCTGCTGGGTGAAAATAATGCTGATCGATCTCAATCAGGAAGTGAAAATAATGCTGATCGATCTCAA
TCAGGAAGTGGGAATTCAATGGTGCTGGAAACTTACGATTCAGAGTCCAATGCATGGACTGGGGTTTCCAGGGAAGCCCCCATCTTCATTCAACCTCATGGCAAAGGTCTCTATTCCAAAGGAAACTTTTACTGGATAATCAAAGGGAATTTCATCTATTTCATGGTAGCATTCGCTATTGCAGAGAAGAGTTGGACAGA
AATTACACTACCAGAGGGTTGCAGGAAAGTCTGCTCTAAGCCATCATCTCTTTATTTAAGTGGATGCCATGGGCGAGTGGTGTTAATACAGAAGGGAGAGAAACTTGCCTGTATGCGCATGTGGAGGTTAAATGAAGGCCAAGGCGCTGCAGAATGGTGTGAACTCCATGCTATATGGGGCCTAAACCGCAATAGGTTTT
ATTCGGTGGTAGCAAACAGCGGGTGGGCAATGATGGTTGATAGGGGAAAGCAAATATATGTGTGCAACCCAGAGCGAAAATTGACCAAGAAATTTTCATTACGTGAGCGGCTTGGCAGATCGGAAGAATTGTTTATACAGTTTCAGTCAGCCTTCGAATCCAACAACGTTTGGTGGCCTTAGGGAGTGAAAAGTTTTAAT
CAAATAAATGATCTCTCATCAAGAAAGAAACAAATGTTGTATTATGCCGTGTTGACTGGTTTTACAAGTGAACCTTTATGATCCAGCTTCTATCAGATACTGAAGAGTTCTTTTCGATATGGAGTTTTGAATAAGATGAAATTATCAGAAAAACTGATCATATTGTATGTATGATTTCTCGATTCGATTTCAATATGTAA
GAATTTTGCAACTCAAATCTTTTAGTGAACTCTTCCCATTATCATTGGAAAGACAAAGAACCACAAGGGTACAACATTCTTATCCATAAATCATACAGTAAGATCACTGTATTCTTGCCTACGATCAGTTTATTCTTGCTTAGAGAGCTACAGAAGAATTTTGTTGCTGAAACTTTAAAATTTATATTACTTTAAGAATT
GGTTTTGCTTCGAATCTATATATATTGCCGAGTCTGTAATAAAGTCAGTGGTTACTCTGTTGCGATTTGCTGCAGCTAAGAACTGTTTTCGTCTAGTTGCCCCAAGATGGATTCCATTGCCTTCACAACTTGGTGAATGATACTGCTGGTTCTGTTCTCCGCCTCTTTAATCTCTTGTTTCGTTTACTGAAGACTTTTCA
TCAATCAATCTTGATTCTACTCCTCG

>TRINITY_DN46105_c0_g3_i3 from sample A8 / Example unspliced isoform:

GAGATATGTTGGATCTTTCCATAGGCAATCCTGCTACCAGAACCTGGAGACGACTCCCTCGCCCTGCACATGTTAACCCAGATTGGGATTTCATTGCAATGACCTTCGATTCTACCTCGAGGCGTTGCACTATCCTGCTGGGTGAAAATAATGCTGATCGATCTCAATCAGGAAGTGAAAATAATGCTGATCGATCTCAA
TCAGGAAGTGGGAATTCAATGGTGCTGGAAACTTACGATTCAGAGTCCAATGCATGGACTGGGGTTTCCAGGGAAGCCCCCATCTTCATTCAACCTCATGGCAAAGGTCTCTATTCCAAAGGAAACTTTTACTGGATAATCAAAGGGAATTTCATCTATTTCATGGTAGCATTCGCTATTGCAGAGAAGAGTTGGACAGA
AATTACACTACCAGAGGGTTGCAGGAAAGTCTGCTCTAAGCCATCATCTCTTTATTTAAGTGGATGCCATGGGCGAGTGGTGTTAATACAGAAGGGAGAGAAACTTGCCTGTATGCGCATGTGGAGGTTAAATGAAGGCCAAGGCGCTGCAGAATGGTGTGAACTCCATGCTATATGGGGCCTAAACCGCAATAGGTTTT
ATTCGGTGGTAGCAAACAGCGGGTGGGCAATGATGGTTGATAGGGGAAAGCAAATATATGTGTGCAACCCAGAGCGAAAATTGACCAAGAAATTTTCATTACGTGAGCGGCTTGGCAGATCGGAAGAATTGTTTATACAGTTTCAGTCAGCCTTCGAATCCAACAACGTTTGGTGGCCTTAGGGAGTGAAAAGTTTTAAT
CAAATAAATGATCTCTCATCAAGAAAGgtacctgcgtttcacactaattgactcatagtctgtaggaccggggttttgcatgaagctttcaagtttacttttgatgtatgaagcatttaaatgttacgttcaataaatagtaatactctcaaccttcttttttttcaaacagAAACAAATGTTGTATTATGCCGTGTTGA
CTGGTTTTACAAGTGAACCTTTATGATCCAGCTTCTATCAGATACTGAAGAGTTCTTTTCGATATGGAGTTTTGAATAAGATGAAATTATCAGAAAAACTGATCATATTGTATGTATGATTTCTCGATTCGATTTCAATATGTAAGAATTTTGCAACTCAAATCTTTTAGTGAACTCTTCCCATTATCATTGGAAAGACA
AAGAACCACAAGGGTACAACATTCTTATCCATAAATCATACAGTAAGATCACTGTATTCTTGCCTACGATCAGTTTATTCTTGCTTAGAGAGCTACAGAAGAATTTTGTTGCTGAAACTTTAAAATTTATATTACTTTAAGAATTGGTTTTGCTTCGAATCTATATATATTGCCGAGTCTGTAATAAAGTCAGTGGTTAC
TCTGTTGCGATTTGCTGCAGCTAAGAACTGTTTTCGTCTAGTTGCCCCAAGATGGATTCCATTGCCTTCACAACTTGGTGAATGATACTGCTGGTTCTGTTCTCCGCCTCTTTAATCTCTTGTTTCGTTTACTGAAGACTTTTCATCAATCAATCTTGATTCTACTCCTCG