NA ----> NA

Intron 1 GTGATTGACT ... GAGAGACTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	85.71	1	9	3
A2	100	0	2	2
A3	33.33	2	0	2
A4	100	0	2	2
A5	100	0	2	4
A6	30.43	8	1	6
A7	48.39	8	4	11
A8	57.89	8	9	13
A9	46.67	8	0	14
A10	57.14	3	1	7

>TRINITY_DN44310_c2_g1_i4 from sample A7 / Example spliced isoform

CACCACACTTGCTTCCCCTTCCACGGTGCCCCCATCCATACTACAACGAGTTGGGGTTTATCACCCTAGACATGCATCTCCACTTCGCCCACCACAGTCCATGCCTCCTTCTTCCACCTCTCCTTCTTACACTGTTCCCCCAGTGGTGTAGCCACCGTCGATGTGAATACATCCTCCCATATACCATCCACCCTAGCATC
GGAGCGGGTTGTCTAGCCGACTGCTCCATCTGTCAGCCCCGAAGACCAGCTGGTTGTGTTCACGGAGCATAGAGGAGGGAGACCCCCTCACGACTTACAGTCTCGCATGTGGGCTTAGGGGGACGTGGTCCAAGTTGCCCGAAGGAACCAGCTTCCTCGAGCACGAAGAAGAGGAAGATCGATTTTGGAGATGCACCTGG
GAGCTCTGAGGGTGGGCAGAGAATTGAGAGACCCTCCTATGTCCACTAGCCACGATGTGGCATTTTGGGCACGAGTTTACATATTTTGTATAGGGCACCATGAGCCATATTTTGTATAGGGAATGAGTTGCCATATTTTGTATAGGGCACAGGTTTCCATTATATAGACGTTGGGAACGATGTTCCATTTTTCCAAAAAG
TGTACATGATCGGATCATTTTTGCATATTAATAGTTGTATCTACACTTGTCT

>TRINITY_DN44310_c2_g1_i5 from sample A7 / Example unspliced isoform:

CACCACACTTGCTTCCCCTTCCACGGTGCCCCCATCCATACTACAACGAGTTGGGGTTTATCACCCTAGACATGCATCTCCACTTCGCCCACCACAGTCCATGCCTCCTTCTTCCACCTCTCCTTCTTACACTGTTCCCCCAGTGGTGTAGCCACCGTCGATGTGAATACATCCTCCCATATACCATCCACCCTAGCATC
GGAGCGGGTTGTCTAGCCGACTGCTCCATCTGTCAGCCCCGAAGACCAGCTGGTTGTGTTCACGgtgattgactagtttataaaaatctcgttcaattttaacgaaaatcactatatgcatctaatttcatcatttatctgattgttctaaatgttgaaaggtggcattgctgagagactagGAGCATAGAGGAGGGAGA
CCCCCTCACGACTTACAGTCTCGCATGTGGGCTTAGGGGGACGTGGTCCAAGTTGCCCGAAGGAACCAGCTTCCTCGAGCACGAAGAAGAGGAAGATCGATTTTGGAGATGCACCTGGGAGCTCTGAGGGTGGGCAGAGAATTGAGAGACCCTCCTATGTCCACTAGCCACGATGTGGCATTTTGGGCACGAGTTTACAT
ATTTTGTATAGGGCACCATGAGCCATATTTTGTATAGGGAATGAGTTGCCATATTTTGTATAGGGCACAGGTTTCCATTATATAGACGTTGGGAACGATGTTCCATTTTTCCAAAAAGTGTACATGATCGGATCATTTTTGCATATTAATAGTTGTATCTACACTTGTCT

Intron 2 GTGATTGACT ... ATGTTGAAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	9	7
A2	100	0	2	0
A3	33.33	2	0	2
A4	100	0	2	2
A5	100	0	2	4
A6	11.11	4	1	0
A7	42.86	8	4	8
A8	58.82	7	9	11
A9	25	6	0	4
A10	33.33	6	1	5

>TRINITY_DN45544_c1_g1_i1 from sample A8 / Example spliced isoform

TCCTATATAGCACCACAGTTCCATTCAACTCCCCCTTACGTTTCATATCCAGCTCCATCTCCGTATTAGTTTCCCATGTTCTCACCCTCCCCCATCCGACCACGGCACACCACCCATCCACAGCCACCCATCCCTCCACCGCAACATAGACCTCGCCTCCACCCTCACATTCCCCCACCACACTTGCTTCCCCTTCCACG
GTGCCCCCATCCATACTACAACGAGTTGGGGTTTATCACCCTAGACATGCATCTCCACTTCGCCCACCACAGTCCATGCCTCCTTCTTCCACCTCTCCTTCTTACACTGTTCCCCCAGTGGTGTAGCCACCGTCGATGTGAATACATCCTCCCATATACCATCCACCCTAGCATCGGAGCGGGTTGTCTAGCCGACTGCT
CCATCTGTCAGCCCCGAAGACCAGCTGGTTGTGTTCACGGTGGCATTGCTGAGAGACTAGGAGCATAGAGGAGGGAGACCCCCTCACGACTTACAGTCTCGCATGTGGGCTTAGGGGGACGTGGTCCAAGTTGCCCGAAGGAACCAGCTTCCTCGAGCACGAAGAAGAGGAAGATCGATTTTGGAGATGCACCTGGGAGC
TCCGAGGGTGGGCAGAGGATTGAAAGACCCTCCTATGTC

>TRINITY_DN45544_c1_g1_i3 from sample A8 / Example unspliced isoform:

TCCTATATAGCACCACAGTTCCATTCAACTCCCCCTTACGTTTCATATCCAGCTCCATCTCCGTATTAGTTTCCCATGTTCTCACCCTCCCCCATCCGACCACGGCACACCACCCATCCACAGCCACCCATCCCTCCACCGCAACATAGACCTCGCCTCCACCCTCACATTCCCCCACCACACTTGCTTCCCCTTCCACG
GTGCCCCCATCCATACTACAACGAGTTGGGGTTTATCACCCTAGACATGCATCTCCACTTCGCCCACCACAGTCCATGCCTCCTTCTTCCACCTCTCCTTCTTACACTGTTCCCCCAGTGGTGTAGCCACCGTCGATGTGAATACATCCTCCCATATACCATCCACCCTAGCATCGGAGCGGGTTGTCTAGCCGACTGCT
CCATCTGTCAGCCCCGAAGACCAGCTGGTTGTGTTCACGgtgattgactagtttataaaaatctcgttcaattttaacgaaaatcactatatgcatctaatttcatcatttatctgattgttctaaatgttgaaagGTGGCATTGCTGAGAGACTAGGAGCATAGAGGAGGGAGACCCCCTCACGACTTACAGTCTCGCA
TGTGGGCTTAGGGGGACGTGGTCCAAGTTGCCCGAAGGAACCAGCTTCCTCGAGCACGAAGAAGAGGAAGATCGATTTTGGAGATGCACCTGGGAGCTCCGAGGGTGGGCAGAGGATTGAAAGACCCTCCTATGTC