sp|F4I171|MD15A_ARATH ----> Mediator of RNA polymerase II transcription subunit 15a
Intron 1 GTAATGTAAA ... TTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 87.37 | 2.4 | 15 | 2 |
| A2 | 81.05 | 3.6 | 13 | 0 |
| A3 | 85 | 1.2 | 6 | 0 |
| A4 | 76 | 2.4 | 6 | 0 |
| A5 | 80 | 1.2 | 4 | 0 |
| A6 | 93.44 | 4.2 | 57 | 1 |
| A7 | 93.6 | 4 | 57 | 6 |
| A8 | 88.91 | 13 | 97 | 2 |
| A9 | 91.16 | 8.4 | 81 | 7 |
| A10 | 94.29 | 1.2 | 19 | 0 |
>TRINITY_DN46097_c2_g3_i1 from sample A7 / Example spliced isoformTTTGGGGGAGTTTGTCATTCAGGGTCAACCCCAATATTGGATGATTGGATGAAATAATGATTTTAGCATGCTGCCACCAAAATGAAACCTAAAAATAGTTCTCAGCCTCAACCCTAACATGAGAGTTCAACTCAAACCCTTGTAGAGACAAAACCATACACAATTGAACTAAACTTCATGCATCAACACTATAGCTATTT
ACAATAATAATAACAAGCAAGCAAAACCTCTTCACATCTGCAGCTCTCAGCACCTCCTGCTCGTTTCCTTTGGCTTTCAACAACTGGAGAGCGCCATGGATACCAACATCTGGAGAAACGATGAATCCAGACAGAAGATCGTCAATAAGATAATGGACACTCTTCAGAGACACATGCCACAAACAGGTCCAGATGGCATG
AATGAAATTAAAAAAATTGCTTTGCGGTTTGAGGATAAGATTTATACACATGCTACAAGTCAGAAAGACTATCTACAAAAAATCTCTCTGAAGATGCTATCATTAGAATCAAAAGCTTCTCAGCCTTCTTTTTCGGGTAGTTCTTCTAGTAACAACCAGCGGCCTCTAGATGCAGCTCAGCAATCTACTCTACAACAAAC
ATCTCGGTCTGCCCTTCACCACCATCATCAATCTATCATTAGACAGCAGCAATCACAACAATCTGTTATACAACAGCAACAGCAGGTTTCTATGTTTCGGCAGTCAGTTCTATCACCACAGCAACAACACCAGCAACGTTTGGGTCAGCAAAATAATGTTTCAAATATGCAGCAGCAGCAGAATCAACTTCAACAGCTTT
TGCAATCCAAACATCAGCAAACACAACAGACATCACCATCATCATTGTTGCAATCACAATCCCAGCACTTGCAGCAGCTGTCACAACAACAGCAACTTTTCTCCGAGCTCCAATCTCAATCGCAACCCTTGCAGCAACAGCAGCCATTGCTTCATCAATCAAATCCAACACAGCAAGAGCTGCAACGAAGGCTCCAGACA
ACTGGTGGTCTGTTGCAGCAGCTGCAACAGAGCTCTATTGAACAGCAAAATCAGCTATTACAACAGCGAGGGCTGTCAGAAGCCTCTTCAACATCAATGGAGTCGTCAGTTCAAACTGGGCAATCAACTGTTGCTGACTGTCAGGAAAAGGTTTATCAGAGACTACAAATTCTGAAGGATATGTATTATCCAGAGATAAA
AGAAATACTTACAAAGCTTCAATTGAAATGTCAACAGCCCATGGCACCCAATAAACTGGAAAAGCTTCAGCACTACATAAATACATTGCAACGTATGATAAAATATTTTCAAGTACAGAAGAGCCGTATTCCACCAGGGTTTAAAGAGGACAAGATTGATGCTTTTGAGAAGCAAATTCAAGCCATTTTGAACTCGTTTA
AGCAGAGAAAATCTGCTCCGCAACAACTTCCAAATCAGATTGTCAGCCAAGTGCAATCTATGCAGCTACGAGAAGAACAGTCGTGACTTTAAAATATGGCGAAAAAATATGTCCATGGTGCACGCCATTTTTCACCATAAATGTACCTGCACTCATTTTATTAGATACCCACAAACCAGACTTTCAAAATTGATGATATA
TTATTAGTTTTTTTATAACAATACGATTACATGTGCTCTTCATTAAAGAGTTTTAAAAATTTGGATTTTTATTTTAACAAGCGCCACAATGGCAAAGTCGCTGCCTCTTACTTGCTAGGAAAGGAGTTTGTTGCTAGTAAAATGAAATTGCAAATGGCGGTGGCAACAAGTGGAAGCTTCATAGTGCTTCTGCTGTCATA
TGTACGTATTTTTTCAATTTGCACCCTCAGCTTGCTGAAGAGCATTGAAGCCAATAGCCATGAGGAAATTTGGATAATCATATCCACGTATTTATTAATTGTGGAATACTTTATCTCATTACTTTGAGGTTTGTAAGATAATTTCATAGTTTTTTTAAATATATTTATTATACCAACAGGATGATTACGTCATGGTCCAC
TTGCTGTTGTACAACATTTGATGGG
>TRINITY_DN46097_c2_g3_i5 from sample A7 / Example unspliced isoform:TCTCTCTGAAGATGCTATCATTAGAATCAAAAGCTTCTCAGCCTTCTTTTTCGGGTAGTTCTTCTAGTAACAACCAGCGGCCTCTAGATGCAGCTCAGCAATCTACTCTACAACAAACATCTCGGTCTGCCCTTCACCACCATCATCAATCTATCATTAGACAGCAGCAATCACAACAATCTGTTATACAACAGCAACAG
CAGGTTTCTATGTTTCGGCAGTCAGTTCTATCACCACAGCAACAACACCAGCAACGTTTGGGTCAGCAAAATAATGTTTCAAATATGCAGCAGCAGCAGAATCAACTTCAACAGCTTTTGCAATCCAAACATCAGCAAACACAACAGACATCACCATCATCATTGTTGCAATCACAATCCCAGCACTTGCAGCAGCTGTC
ACAACAACAGCAACTTTTCTCCGAGCTCCAATCTCAATCGCAACCCTTGCAGCAACAGCAGCCATTGCTTCATCAATCAAATCCAACACAGCAAGAGCTGCAACGAAGGCTCCAGACAACTGGTGGTCTGTTGCAGCAGCTGCAACAGAGCTCTATTGAACAGCAAAATCAGCTATTACAACAGCGAGGGCTGTCAGAAG
CCTCTTCAAGTAAAATCCACTCCCCTGTTTCATTTGCATTTTATACTGTATTTCCATTTAGATTGTGGTTAAGGTATTAAATATCAATGATAATGCTTAATTATCGATCATCGCCACTCTATATCTATAGTGCATCCAACTTCATCTAAGCATGGATGAAAGGTATACATTTGGATATTCTTCTGATATTTCAGATTAAT
AAAAAAGTTGTGTGGCCTTATATGGGCCAACTGTGGGTTTTCCAGCATCAATGGAGTCGTCAGTTCAAACTGGGCAATCAACTGTTGCTGACTGTCAGGAAAAGGTTTATCAGAGACTACAAATTCTGAAGGATATGTATTATCCAGAGATAAAAGAAATACTTACAAAGCTTCAATTGAAATGTCAACAGCCCATGGCA
CCCAATAAACTGGAAAAGCTTCAGCACTACATAAATACATTGCAACGTATGATAAAATATTTTCAAGTACAGAAGAGCCGTATTCCACCAGGGTTTAAAGAGGACAAGATTGATGCTTTTGAGAAGCAAATTCAAGCCATTTTGAACTCGTTTAAGCAGAGAAAATCTGCTCCGCAACAACTTCCAAATCAGATTGTCAG
CCAAGTGCAATCTATGCAGCTACGAGAAGAACAGTCGTGACTTTAAAATATGGCGAAAAAATATGTCCATGGTGCACGCCATTTTTCACCATAAATGTACCTGCACTCATTTTATTAGATACCCACAAACCAGACTTTCAAAATTGATGATATATTATTAGTTTTTTTATAACAATACGATTACATGTGCTCTTCATTAA
AGAGTTTTAAAAATTTGGATTTTTATTTTAACAAGCGCCACAATGGCAAAGTCGCTGCCTCTTACTTGCTAGGAAAGGAGTTTGTTGCTAGTAAAATGAAATTGCAAATGGCGGTGGCAACAAGTGGAAGCTTCATAGTGCTTCTGgtaatgtaaattggaacaagttttctgccactaattggaacaaattctctgcca
ttaaaatgcaaactaggcttataagtgtttggctgttaaaacctataagtatattaatcaaggaaattttttttgcagCTGTCATATGTACGTATTTTTTCAATTTGCACCCTCAGCTTGCTGGTATTGAGATCTATGCTTCCTTGTGTTCCAAATATAATCAGAGAAACATGCTTTCCTGCATTTTTTTTTGCTTGCGA
AGGAGTTTGCATTGGCATGAGATTTGTGTTTATTTTGCATGTGCAGAAGAGCATTGAAGCCAATAGCCATGAGGAAATTTGGATAATCATATCCACGTATTTATTAATTGTGGAATACTTTATCTCATTACTTTGAGGTTTGTAAGATAATTTCATAGTTTTTTTAAATATATTTATTATACCAACAGGATGATTACGTC
ATGGTCCACTTGCTGTTGTACAACATTTGATGGG
Intron 2 GTATTGAGAT ... GCATGTGCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 2 | 1 |
| A2 | 33.33 | 2 | 0 | 2 |
| A3 | 100 | 0 | 0 | 1 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 33.33 | 1 | 0 | 1 |
| A7 | 66.67 | 2 | 5 | 3 |
| A8 | 42.86 | 2 | 1 | 2 |
| A9 | 80 | 1 | 4 | 4 |
| A10 | -1 | 0 | 0 | 0 |
>TRINITY_DN42480_c5_g1_i5 from sample A9 / Example spliced isoformAGCTTCATAGTGCTTCTGCTGTCATATGTACGTATTTTTTCAATTTGCACCCTCAGCTTGCTGAAGAGCATTGAAGCCAATAGCCATGAGGAAATTTGGATAATCATATCCACGTATTTATTAATTGTGGAATACTTTATCTCATTACTTTGAGGTTTGTAAGATAATTTCATAGTTTTTTTAAATATATTTATTATACC
AACAGGATGATTACGTCATGGTCCACTTGCTGTTGTACAACATTTGATGGGGC
>TRINITY_DN42480_c5_g1_i1 from sample A9 / Example unspliced isoform:GGTTAGGCTGAGGCCTGCTTTTTGGGGGATTTTGTCATTCAGGGTCAACCCCAATATTGGATGATTGGATGAAATAATGATTTTAGCATGCTGCCACCAAAATGAAACCTAAAAATAGTTCTCAGCCTCAACCCTAACATGAGAGTTCAACTCAAACCCTTGTAGAGACAAAACCATACACAATTGAACTAAACTTCATG
CATCAACACTATAGCTATTTACAATAATAATAACAAGCAAGCAAAACCTCTTCACATCTGCAGCTCTCAGCACCTCCTGCTCGTTTCCTTTGGCTTTCAACAACTGGAGAGCGCCATGGATACCAACATCTGGAGAAACGATGAATCCAGACAGAAGATCGTCAATAAGATAATGGACACTCTTCAGAGACACATGCCAC
AAACAGGTCCAGATGGCATGAATGAAATTAAAAAAATTGCTTTGCGGTTTGAGGATAAGATTTATACACATGCTACAAGTCAGAAAGACTATCTACAAAAAATCTCTCTGAAGATGCTATCATTAGAATCAAAAGCTTCTCAGCCTTCTTTTTCGGGTAGTTCTTCTAGTAACAACCAGCGGCCTCTAGATGCAGCTCAG
CAATCTACTCTACAACAAACATCTCGGTCTGCCCTTCACCACCATCATCAATCTATCATTAGACAGCAGCAATCACAACAATCTGTTATACAACAGCAACAGCAGGTTTCTATGTTTCGGCAGTCAGTTCTATCACCACAGCAACAACACCAGCAACGTTTGGGTCAGCAAAATAACGTTTCAAATATGCAGCAGCAGCA
GAATCAACTTCAACAGCTTTTGCAATCCAAACATCAGCAAACACAACAGACATCACCATCATCATTGTTGCAATCACAATCCCAGCACTTGCAGCAGCTGTCACAACAACAGCAACTTTTCTCCGAGCTCCAATCTCAATCGCAACCCTTGCAGCAACAGCAGCCATTGCTTCATCAATCAAATCCAACACAGCAAGAGC
TGCAACGAAGGCTCCAGACAACTGGTGGTCTGTTGCAGCAGCAGCAACAGAGCTCTATTGAACAGCAAAATCAGCTATTACAACAGCGAGGGCTGTCAGAAGCCTCTTCAACATCAATGGAGTCGTCAGTTCAAACTGGGCAATCAACTGTTGCTGACTGTCAGGAAAAGGTTTATCAGAGACTACAAATTCTGAAGGAG
ATGTATTATCCAGAGATAAAAGAAATACTTACAAAGCTTCAATTGAAATGTCAACAGCCCATGGCACCCAATAAACTGGAAAAGCTTCAGCACTACATAAATACATTGCAACGTATGATAAAATATTTTCAAGTACAGAAGAGCCGTATTCCACCAGGGTTTAAAGAGGACAAGATTGATGCTTTTGAGAAGCAAATTCA
AGCCATTTTGAACTCGTTTAAGCAGAGAAAATCTGCTCCGCAACAACTTCCAAATCAGATTGTCAGCCAAGTGCAATCTATGCAGCTACGAGAAGAACAGTCGTGACTTTAAAATATGGCGAAAAAATATGTCCATGGTGCACGCCATTTTTCACCATAAATGTACCTGCACTCATTTTATTAGATACCCACAAACCAGA
CTTTCAAAATTGATGATATATTATTAGTTTTTTTATAACAATACGATTACATGTGCTCTTCATTAAAGAGTTTTAAAAATTTGGATTTTTATTTTAACAAGCGCCACAATGGCAAAGTCGCTGCCTCTTACTTGCTAGGAAAGGAGTTTGTTGCTAGTAAAATGAAATTGCAAATGGCGGTGGCAACAAGTGGAAGCTTC
ATAGTGCTTCTGGTAATGTAAATTGGAACAAGTTTTCTGCCACTAATTGGAACAAATTCTCTGCCATTAAAATGCAAACTAGGCTTATAAGTGTTTGGCTGTTAAAACCTATAAGTATATTAATCAAGGAAATATTTTTTGCAGCTGTCATATGTACGTATTTTTTCAATTTGCACCCTCAGCTTGCTGgtattgagatc
tatgcttccttgtgttccaaatataatcagagaaacatgctttcctgcattttttttgcttgcgaaggagtttgcattggcatgagatttgtgtttattttgcatgtgcagAAGAGCATTGAAGCCAATAGCCATGAGGAAATTTGGATAATCATATCCACGTATTTATTAATTGTGGAATACTTTATCTCATTACTTTG
AGGTTTGTAAGATAATTTCATAGTTTTTTTAAATATATTTATTATACCAACAGGATGATTACGTCATGGTCCACTTGCTGTTGTACAACATTTGATGGGGC
Intron 3 GTATTGAGAT ... GCATGTGCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 2 | 1 |
| A2 | 14.29 | 6 | 0 | 2 |
| A3 | 100 | 0 | 0 | 1 |
| A4 | 0 | 2 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 11.11 | 4 | 0 | 1 |
| A7 | 66.67 | 2 | 5 | 3 |
| A8 | 42.86 | 2 | 1 | 2 |
| A9 | 80 | 1 | 4 | 4 |
| A10 | -1 | 0 | 0 | 0 |
>TRINITY_DN46097_c2_g3_i1 from sample A7 / Example spliced isoformTTTGGGGGAGTTTGTCATTCAGGGTCAACCCCAATATTGGATGATTGGATGAAATAATGATTTTAGCATGCTGCCACCAAAATGAAACCTAAAAATAGTTCTCAGCCTCAACCCTAACATGAGAGTTCAACTCAAACCCTTGTAGAGACAAAACCATACACAATTGAACTAAACTTCATGCATCAACACTATAGCTATTT
ACAATAATAATAACAAGCAAGCAAAACCTCTTCACATCTGCAGCTCTCAGCACCTCCTGCTCGTTTCCTTTGGCTTTCAACAACTGGAGAGCGCCATGGATACCAACATCTGGAGAAACGATGAATCCAGACAGAAGATCGTCAATAAGATAATGGACACTCTTCAGAGACACATGCCACAAACAGGTCCAGATGGCATG
AATGAAATTAAAAAAATTGCTTTGCGGTTTGAGGATAAGATTTATACACATGCTACAAGTCAGAAAGACTATCTACAAAAAATCTCTCTGAAGATGCTATCATTAGAATCAAAAGCTTCTCAGCCTTCTTTTTCGGGTAGTTCTTCTAGTAACAACCAGCGGCCTCTAGATGCAGCTCAGCAATCTACTCTACAACAAAC
ATCTCGGTCTGCCCTTCACCACCATCATCAATCTATCATTAGACAGCAGCAATCACAACAATCTGTTATACAACAGCAACAGCAGGTTTCTATGTTTCGGCAGTCAGTTCTATCACCACAGCAACAACACCAGCAACGTTTGGGTCAGCAAAATAATGTTTCAAATATGCAGCAGCAGCAGAATCAACTTCAACAGCTTT
TGCAATCCAAACATCAGCAAACACAACAGACATCACCATCATCATTGTTGCAATCACAATCCCAGCACTTGCAGCAGCTGTCACAACAACAGCAACTTTTCTCCGAGCTCCAATCTCAATCGCAACCCTTGCAGCAACAGCAGCCATTGCTTCATCAATCAAATCCAACACAGCAAGAGCTGCAACGAAGGCTCCAGACA
ACTGGTGGTCTGTTGCAGCAGCTGCAACAGAGCTCTATTGAACAGCAAAATCAGCTATTACAACAGCGAGGGCTGTCAGAAGCCTCTTCAACATCAATGGAGTCGTCAGTTCAAACTGGGCAATCAACTGTTGCTGACTGTCAGGAAAAGGTTTATCAGAGACTACAAATTCTGAAGGATATGTATTATCCAGAGATAAA
AGAAATACTTACAAAGCTTCAATTGAAATGTCAACAGCCCATGGCACCCAATAAACTGGAAAAGCTTCAGCACTACATAAATACATTGCAACGTATGATAAAATATTTTCAAGTACAGAAGAGCCGTATTCCACCAGGGTTTAAAGAGGACAAGATTGATGCTTTTGAGAAGCAAATTCAAGCCATTTTGAACTCGTTTA
AGCAGAGAAAATCTGCTCCGCAACAACTTCCAAATCAGATTGTCAGCCAAGTGCAATCTATGCAGCTACGAGAAGAACAGTCGTGACTTTAAAATATGGCGAAAAAATATGTCCATGGTGCACGCCATTTTTCACCATAAATGTACCTGCACTCATTTTATTAGATACCCACAAACCAGACTTTCAAAATTGATGATATA
TTATTAGTTTTTTTATAACAATACGATTACATGTGCTCTTCATTAAAGAGTTTTAAAAATTTGGATTTTTATTTTAACAAGCGCCACAATGGCAAAGTCGCTGCCTCTTACTTGCTAGGAAAGGAGTTTGTTGCTAGTAAAATGAAATTGCAAATGGCGGTGGCAACAAGTGGAAGCTTCATAGTGCTTCTGCTGTCATA
TGTACGTATTTTTTCAATTTGCACCCTCAGCTTGCTGAAGAGCATTGAAGCCAATAGCCATGAGGAAATTTGGATAATCATATCCACGTATTTATTAATTGTGGAATACTTTATCTCATTACTTTGAGGTTTGTAAGATAATTTCATAGTTTTTTTAAATATATTTATTATACCAACAGGATGATTACGTCATGGTCCAC
TTGCTGTTGTACAACATTTGATGGG
>TRINITY_DN46097_c2_g3_i2 from sample A7 / Example unspliced isoform:AGACAGAAGATCGTCAATAAGATGGGGCATCCATTTGTTTGATTGAGGTTTCTGGGACTGCTTTATTCTCAGTTTAAAACATCCTCATCTTATAGATGGAATGATTCAACATCCGTATGGAATGGACACTCTTCAGAGACACATGCCACAAACAGGTCCAGATGGCATGAATGAAATTAAAAAAATTGCTTTGCGGTTTG
AGGATAAGATTTATACACATGCTACAAGTCAGAAAGACTATCTACAAAAAAATCTCTCTGAAGATGCTATCATTAGAATCAAAAGCTTCTCAGCCTTCTTTTTCGGGTAGTTCTTCTAGTAACAACCAGCGGCCTCTAGATGCAGCTCAGCAATCTACTCTACAACAAACATCTCGGTCTGCCCTTCACCACCATCATCA
ATCTATCATTAGACAGCAGCAATCACAACAATCTGTTATACAACAGCAACAGCAGGTTTCTATGTTTCGGCAGTCAGTTCTATCACCACAGCAACAACACCAGCAACGTTTGGGTCAGCAAAATAATGTTTCAAATATGCAGCAGCAGCAGAATCAACTTCAACAGCTTTTGCAATCCAAACATCAGCAAACACAACAGA
CATCACCATCATCATTGTTGCAATCACAATCCCAGCACTTGCAGCAGCTGTCACAACAACAGCAACTTTTCTCCGAGCTCCAATCTCAATCGCAACCCTTGCAGCAACAGCAGCCATTGCTTCATCAATCAAATCCAACACAGCAAGAGCTGCAACGAAGGCTCCAGACAACTGGTGGTCTGTTGCAGCAGCTGCAACAG
AGCTCTATTGAACAGCAAAATCAGCTATTACAACAGCGAGGGCTGTCAGAAGCCTCTTCAACATCAATGGAGTCGTCAGTTCAAACTGGGCAATCAACTGTTGCTGACTGTCAGGAAAAGGTTTATCAGAGACTACAAATTCTGAAGGATATGTATTATCCAGAGATAAAAGAAATACTTACAAAGCTTCAATTGAAATG
TCAACAGCCCATGGCACCCAATAAACTGGAAAAGCTTCAGCACTACATAAATACATTGCAACGTATGATAAAATATTTTCAAGTACAGAAGAGCCGTATTCCACCAGGGTTTAAAGAGGACAAGATTGATGCTTTTGAGAAGCAAATTCAAGCCATTTTGAACTCGTTTAAGCAGAGAAAATCTGCTCCGCAACAACTTC
CAAATCAGATTGTCAGCCAAGTGCAATCTATGCAGCTACGAGAAGAACAGTCGTGACTTTAAAATATGGCGAAAAAATATGTCCATGGTGCACGCCATTTTTCACCATAAATGTACCTGCACTCATTTTATTAGATACCCACAAACCAGACTTTCAAAATTGATGATATATTATTAGTTTTTTTATAACAATACGATTAC
ATGTGCTCTTCATTAAAGAGTTTTAAAAATTTGGATTTTTATTTTAACAAGCGCCACAATGGCAAAGTCGCTGCCTCTTACTTGCTAGGAAAGGAGTTTGTTGCTAGTAAAATGAAATTGCAAATGGCGGTGGCAACAAGTGGAAGCTTCATAGTGCTTCTGGTAATGTAAATTGGAACAAGTTTTCTGCCACTAATTGG
AACAAATTCTCTGCCATTAAAATGCAAACTAGGCTTATAAGTGTTTGGCTGTTAAAACCTATAAGTATATTAATCAAGGAAATTTTTTTTGCAGCTGTCATATGTACGTATTTTTTCAATTTGCACCCTCAGCTTGCTGgtattgagatctatgcttccttgtgttccaaatataatcagagaaacatgctttcctgcat
ttttttttgcttgcgaaggagtttgcattggcatgagatttgtgtttattttgcatgtgcagAAGAGCATTGAAGCCAATAGCCATGAGGAAATTTGGATAATCATATCCACGTATTTATTAATTGTGGAATACTTTATCTCATTACTTTGAGGTTTGTAAGATAATTTCATAGTTTTTTTAAATATATTTATTATACCA
ACAGGATGATTACGTCATGGTCCACTTGCTGTTGTACAACATTTGATGGG
Intron 4 GTAAAATCCA ... GGTTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.44 | 58 | 6 | 22 |
| A2 | 6.98 | 40 | 1 | 5 |
| A3 | 8.7 | 42 | 6 | 2 |
| A4 | 8.33 | 22 | 1 | 3 |
| A5 | 12 | 11 | 3 | 0 |
| A6 | 15 | 34 | 9 | 3 |
| A7 | 18.62 | 59 | 11 | 16 |
| A8 | 18.88 | 58 | 15 | 12 |
| A9 | 18.95 | 77 | 19 | 17 |
| A10 | 18.71 | 63 | 8 | 21 |
>TRINITY_DN46097_c2_g3_i1 from sample A7 / Example spliced isoformTTTGGGGGAGTTTGTCATTCAGGGTCAACCCCAATATTGGATGATTGGATGAAATAATGATTTTAGCATGCTGCCACCAAAATGAAACCTAAAAATAGTTCTCAGCCTCAACCCTAACATGAGAGTTCAACTCAAACCCTTGTAGAGACAAAACCATACACAATTGAACTAAACTTCATGCATCAACACTATAGCTATTT
ACAATAATAATAACAAGCAAGCAAAACCTCTTCACATCTGCAGCTCTCAGCACCTCCTGCTCGTTTCCTTTGGCTTTCAACAACTGGAGAGCGCCATGGATACCAACATCTGGAGAAACGATGAATCCAGACAGAAGATCGTCAATAAGATAATGGACACTCTTCAGAGACACATGCCACAAACAGGTCCAGATGGCATG
AATGAAATTAAAAAAATTGCTTTGCGGTTTGAGGATAAGATTTATACACATGCTACAAGTCAGAAAGACTATCTACAAAAAATCTCTCTGAAGATGCTATCATTAGAATCAAAAGCTTCTCAGCCTTCTTTTTCGGGTAGTTCTTCTAGTAACAACCAGCGGCCTCTAGATGCAGCTCAGCAATCTACTCTACAACAAAC
ATCTCGGTCTGCCCTTCACCACCATCATCAATCTATCATTAGACAGCAGCAATCACAACAATCTGTTATACAACAGCAACAGCAGGTTTCTATGTTTCGGCAGTCAGTTCTATCACCACAGCAACAACACCAGCAACGTTTGGGTCAGCAAAATAATGTTTCAAATATGCAGCAGCAGCAGAATCAACTTCAACAGCTTT
TGCAATCCAAACATCAGCAAACACAACAGACATCACCATCATCATTGTTGCAATCACAATCCCAGCACTTGCAGCAGCTGTCACAACAACAGCAACTTTTCTCCGAGCTCCAATCTCAATCGCAACCCTTGCAGCAACAGCAGCCATTGCTTCATCAATCAAATCCAACACAGCAAGAGCTGCAACGAAGGCTCCAGACA
ACTGGTGGTCTGTTGCAGCAGCTGCAACAGAGCTCTATTGAACAGCAAAATCAGCTATTACAACAGCGAGGGCTGTCAGAAGCCTCTTCAACATCAATGGAGTCGTCAGTTCAAACTGGGCAATCAACTGTTGCTGACTGTCAGGAAAAGGTTTATCAGAGACTACAAATTCTGAAGGATATGTATTATCCAGAGATAAA
AGAAATACTTACAAAGCTTCAATTGAAATGTCAACAGCCCATGGCACCCAATAAACTGGAAAAGCTTCAGCACTACATAAATACATTGCAACGTATGATAAAATATTTTCAAGTACAGAAGAGCCGTATTCCACCAGGGTTTAAAGAGGACAAGATTGATGCTTTTGAGAAGCAAATTCAAGCCATTTTGAACTCGTTTA
AGCAGAGAAAATCTGCTCCGCAACAACTTCCAAATCAGATTGTCAGCCAAGTGCAATCTATGCAGCTACGAGAAGAACAGTCGTGACTTTAAAATATGGCGAAAAAATATGTCCATGGTGCACGCCATTTTTCACCATAAATGTACCTGCACTCATTTTATTAGATACCCACAAACCAGACTTTCAAAATTGATGATATA
TTATTAGTTTTTTTATAACAATACGATTACATGTGCTCTTCATTAAAGAGTTTTAAAAATTTGGATTTTTATTTTAACAAGCGCCACAATGGCAAAGTCGCTGCCTCTTACTTGCTAGGAAAGGAGTTTGTTGCTAGTAAAATGAAATTGCAAATGGCGGTGGCAACAAGTGGAAGCTTCATAGTGCTTCTGCTGTCATA
TGTACGTATTTTTTCAATTTGCACCCTCAGCTTGCTGAAGAGCATTGAAGCCAATAGCCATGAGGAAATTTGGATAATCATATCCACGTATTTATTAATTGTGGAATACTTTATCTCATTACTTTGAGGTTTGTAAGATAATTTCATAGTTTTTTTAAATATATTTATTATACCAACAGGATGATTACGTCATGGTCCAC
TTGCTGTTGTACAACATTTGATGGG
>TRINITY_DN46097_c2_g3_i5 from sample A7 / Example unspliced isoform:TCTCTCTGAAGATGCTATCATTAGAATCAAAAGCTTCTCAGCCTTCTTTTTCGGGTAGTTCTTCTAGTAACAACCAGCGGCCTCTAGATGCAGCTCAGCAATCTACTCTACAACAAACATCTCGGTCTGCCCTTCACCACCATCATCAATCTATCATTAGACAGCAGCAATCACAACAATCTGTTATACAACAGCAACAG
CAGGTTTCTATGTTTCGGCAGTCAGTTCTATCACCACAGCAACAACACCAGCAACGTTTGGGTCAGCAAAATAATGTTTCAAATATGCAGCAGCAGCAGAATCAACTTCAACAGCTTTTGCAATCCAAACATCAGCAAACACAACAGACATCACCATCATCATTGTTGCAATCACAATCCCAGCACTTGCAGCAGCTGTC
ACAACAACAGCAACTTTTCTCCGAGCTCCAATCTCAATCGCAACCCTTGCAGCAACAGCAGCCATTGCTTCATCAATCAAATCCAACACAGCAAGAGCTGCAACGAAGGCTCCAGACAACTGGTGGTCTGTTGCAGCAGCTGCAACAGAGCTCTATTGAACAGCAAAATCAGCTATTACAACAGCGAGGGCTGTCAGAAG
CCTCTTCAAgtaaaatccactcccctgtttcatttgcattttatactgtatttccatttagattgtggttaaggtattaaatatcaatgataatgcttaattatcgatcatcgccactctatatctatagtgcatccaacttcatctaagcatggatgaaaggtatacatttggatattcttctgatatttcagattaat
aaaaaagttgtgtggccttatatgggccaactgtgggttttccagCATCAATGGAGTCGTCAGTTCAAACTGGGCAATCAACTGTTGCTGACTGTCAGGAAAAGGTTTATCAGAGACTACAAATTCTGAAGGATATGTATTATCCAGAGATAAAAGAAATACTTACAAAGCTTCAATTGAAATGTCAACAGCCCATGGCA
CCCAATAAACTGGAAAAGCTTCAGCACTACATAAATACATTGCAACGTATGATAAAATATTTTCAAGTACAGAAGAGCCGTATTCCACCAGGGTTTAAAGAGGACAAGATTGATGCTTTTGAGAAGCAAATTCAAGCCATTTTGAACTCGTTTAAGCAGAGAAAATCTGCTCCGCAACAACTTCCAAATCAGATTGTCAG
CCAAGTGCAATCTATGCAGCTACGAGAAGAACAGTCGTGACTTTAAAATATGGCGAAAAAATATGTCCATGGTGCACGCCATTTTTCACCATAAATGTACCTGCACTCATTTTATTAGATACCCACAAACCAGACTTTCAAAATTGATGATATATTATTAGTTTTTTTATAACAATACGATTACATGTGCTCTTCATTAA
AGAGTTTTAAAAATTTGGATTTTTATTTTAACAAGCGCCACAATGGCAAAGTCGCTGCCTCTTACTTGCTAGGAAAGGAGTTTGTTGCTAGTAAAATGAAATTGCAAATGGCGGTGGCAACAAGTGGAAGCTTCATAGTGCTTCTGGTAATGTAAATTGGAACAAGTTTTCTGCCACTAATTGGAACAAATTCTCTGCCA
TTAAAATGCAAACTAGGCTTATAAGTGTTTGGCTGTTAAAACCTATAAGTATATTAATCAAGGAAATTTTTTTTGCAGCTGTCATATGTACGTATTTTTTCAATTTGCACCCTCAGCTTGCTGGTATTGAGATCTATGCTTCCTTGTGTTCCAAATATAATCAGAGAAACATGCTTTCCTGCATTTTTTTTTGCTTGCGA
AGGAGTTTGCATTGGCATGAGATTTGTGTTTATTTTGCATGTGCAGAAGAGCATTGAAGCCAATAGCCATGAGGAAATTTGGATAATCATATCCACGTATTTATTAATTGTGGAATACTTTATCTCATTACTTTGAGGTTTGTAAGATAATTTCATAGTTTTTTTAAATATATTTATTATACCAACAGGATGATTACGTC
ATGGTCCACTTGCTGTTGTACAACATTTGATGGG