sp|Q9FMN4|TCLOT_ARATH ----> Thioredoxin-like protein Clot

Intron 1 GTTATGGTTA ... ATCATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	70	3	4	7
A2	52.94	8	0	9
A3	52.17	11	3	12
A4	55.56	4	0	5
A5	50	6	0	6
A6	55.37	79	6	98
A7	56.31	45	12	58
A8	56.25	35	4	45
A9	51.75	55	5	59
A10	54.9	46	6	56

>TRINITY_DN45060_c5_g7_i1 from sample A9 / Example spliced isoform

GTCTACTCTCAAAGAGCAAATGTCAAAAGCAAGATTTGAACCCGGGTGGGGAGGACAACAACATTCCTCCCAACCACCCAATCTACACTCAATTCAGCCGATTGAGAAGCGAAACCTCTTTCCACTCTCTAAAGTGAGAATCACTGCAGCCGATTGAGAAGCGAGATTTCATTTGTTGTTTGGACGACGTTGCAGATAAG
GCAGAAACCATGGGTTTTACTCAGATTGATGCAACCGTTGAAAATTTCTCCACTGCCTTTGAATCCATCGAGACTAACAATGACAAGGATAGAGTCACGTTGCTGCTTTTTTTGGCGGACAAAGATCCTGCTTCAGGCCTCAGCTGGTGTCCAGATTGCGTGAGGGCAGAGCCAGTGATTTACAAAACACTGGAGAAATC
CGAGAAGAATGCAGTTCTTCTCAGGGCCTTTGCGGGGAATCGGCCTACATGGCGAAACCCCAGTCATCCATGGAGGGTGGATGGACGCTTCCAATTGAAAGGGTTGCCTACCCTTATCCGTTGGAGTGACGGAGCCATTGCAGGGCGCCTGGAGGACAACGAGGCGCATATTGAATCTCGTATTAGTAAGCTGCTTGAGT
AGGGTTATGGTTAGTAGTATATTAAAGAAATTTACGTTGATAAATAAGTGGACAATAGTGCATTTAGAAACTGGCTTACCTAAATAAATAGTTGTATAAAATTCAATAATTGATTGTGTACTATGAGTTCTTCAACAAGGTGGTTTCAGGCTACCCTCTATCAGAAGAATTAGATCTTATTGTAGTTTTCTGGTTCTTTT
CTCCGCATTCTTTTTCTTAGCAGGTAGGGTGTCATGGTTATCATGGGCATGATTAGTTATGGGGTTTATTATTTTCATAATAGAGGGGATTTTCGATGGTCTGGCAAGGATGAAGCCTGAAGGTCATCTCTGATGGAGTATTTGAAATAGAGTTTTGCTAGGTAATTGGTTTATGAGAATGGAGCTAAGACAGATATGAG
GAATGAAAATTTTCAAATATGAACGGTCTACTGTAAAGAATACTTTACTTTTTAAAGTAAAGTATACATTAATTATAGATGAATGTTCACG

>TRINITY_DN45060_c5_g7_i2 from sample A9 / Example unspliced isoform:

GTCTACTCTCAAAGAGCAAATGTCAAAAGCAAGATTTGAACCCGGGTGGGGAGGACAACAACATTCCTCCCAACCACCCAATCTACACTCAATTCAGgttatggttagccttatccttgctgtgcgtattccattttttaatatttgttgttagcccaaccttctcgacaacctttttccactctctaaagtgagaatca
ttgcagCCGATTGAGAAGCGAAACCTCTTTCCACTCTCTAAAGTGAGAATCACTGCAGCCGATTGAGAAGCGAGATTTCATTTGTTGTTTGGACGACGTTGCAGATAAGGCAGAAACCATGGGTTTTACTCAGATTGATGCAACCGTTGAAAATTTCTCCACTGCCTTTGAATCCATCGAGACTAACAATGACAAGGATA
GAGTCACGTTGCTGCTTTTTTTGGCGGACAAAGATCCTGCTTCAGGCCTCAGCTGGTGTCCAGATTGCGTGAGGGCAGAGCCAGTGATTTACAAAACACTGGAGAAATCCGAGAAGAATGCAGTTCTTCTCAGGGCCTTTGCGGGGAATCGGCCTACATGGCGAAACCCCAGTCATCCATGGAGGGTGGATGGACGCTTC
CAATTGAAAGGGTTGCCTACCCTTATCCGTTGGAGTGACGGAGCCATTGCAGGGCGCCTGGAGGACAACGAGGCGCATATTGAATCTCGTATTAGTAAGCTGCTTGAGTAGGGTTATGGTTAGTAGTATATTAAAGAAATTTACGTTGATAAATAAGTGGACAATAGTGCATTTAGAAACTGGCTTACCTAAATAAATAG
TTGTATAAAATTCAATAATTGATTGTGTACTATGAGTTCTTCAACAAGGTGGTTTCAGGCTACCCTCTATCAGAAGAATTAGATCTTATTGTAGTTTTCTGGTTCTTTTCTCCGCATTCTTTTTCTTAGCAGGTAGGGTGTCATGGTTATCATGGGCATGATTAGTTATGGGGTTTATTATTTTCATAATAGAGGGGATT
TTCGATGGTCTGGCAAGGATGAAGCCTGAAGGTCATCTCTGATGGAGTATTTGAAATAGAGTTTTGCTAGGTAATTGGTTTATGAGAATGGAGCTAAGACAGATATGAGGAATGAAAATTTTCAAATATGAACGGTCTACTGTAAAGAATACTTTACTTTTTAAAGTAAAGTATACATTAATTATAGATGAATGTTCACG

Intron 2 GTTTTCATTT ... AATTTTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	22.89	64	24	14
A2	24.9	92	38	23
A3	22.83	98	46	12
A4	22.58	84	35	14
A5	27.87	44	16	18
A6	22.21	942	320	218
A7	23.36	561	217	125
A8	22.07	542	176	131
A9	21.42	554	188	114
A10	22.01	459	155	104

>TRINITY_DN46344_c0_g1_i2 from sample A2 / Example spliced isoform

TCCACTCTCTAAAGTGAGAATCATTGCAGCCGATTGAGAAGCGAAACCTCTTTCCACTCTCTAAAGTGAGAATCATTGCAGCCGATTGAGAAGCGAAACCTCTTTCCACTCTCTAAAGTGAGAATCACTGCAGCCGATTGAGAAGCGAGATTTCATTTGTTGTTTGGACGACGTTGCAGATAAGGCAGAAACCATGGGTT
TTACTCAGATTGATGCAACCGTTGAAAATTTCTCCACTGCCTTTGAATCCATCGAGACTAACAATGACAAGGATAGAGTCACGTTGCTGCTTTTTTTGGCGGACAAAGATCCTGCTTCAGGCCTCAGCTGGTGTCCAGATTGCGTGAGGGCAGAGCCAGTGATTTACAAAACACTGGAGAAATCCGAGAAGAATGCAGTT
CTTCTCAGGGCCTTTGCGGGGAATCGGCCTACATGGCGAAACCCCAGTCATCCATGGAGGGTGGATGGACGCTTCCAATTGAAAGGGTTGCCTACCCTTATCCGTTGGAGTGACGGAGCCATTGCAGGGCGCCTGGAGGACAACGAGGCGCATATTGAATCTCGTATTAGTAAGCTGCTTGAGTAGGGTTATGGTTAGTA
GTATATTAAAGAAATTTACGTTGATAAATAAGTGGACAATAGTGCATTTAGAAACTGGCTTACCTAAATAAATAGTTGTATAAAATTCAATAATTGATTGTGTACTATGAGTTCTTCAACAAGGTGGTTTCAGGCTACCCTCTATCAGAAGAATTAGATCTTATTGTAGTTTTCTGGTTCTTTTCTCCGCATTCTTTTTC
TTAGCAGGTAGGGTGTCATGGTTATCATGGGCATGATTAGTTATGGGGTTTATTATTTTCATAATAGAGGGGATTTTCGATGGTCTGGCAAGGATGAAGCCTGAAGGTCATCTCTGATGGAGTATTTGAAATAGAGTTTTGCTAGGTAATTGGTTTATGAGAATGGAGCTAAGACAGATATGAGGAATGAAAATTTTCAA
ATATGAACGGTCTACTGTAAAGAATACTTTACTTTTTAAAGTAAAGTATACATTAATTATAGATGAATGTTCACGTTAAAAACTGA

>TRINITY_DN46344_c0_g1_i1 from sample A2 / Example unspliced isoform:

TCCACTCTCTAAAGTGAGAATCATTGCAGCCGATTGAGAAGCGAAACCTCTTTCCACTCTCTAAAGTGAGAATCATTGCAGCCGATTGAGAAGCGAAACCTCTTTCCACTCTCTAAAGTGAGAATCACTGCAGCCGATTGAGAAGCGAGATTTCATTTGTTGTTTGGACGACGTTGCAGATAAGGCAGAAACCATGGGTT
TTACTCAGATTGATGCAACCGTTGAAAATTTCTCCACTGCCTTTGAATCCATCGAGACTAACAATGACAAGGATAGAGTCACGTTGCTGCTTTTTTTGGCGGACAAAGATCCTGCTTCAGGCCTCAGCTGGTGTCCAGgttttcatttctaattccctcagtcccttttactttttttgcaaatttattttctacgagaa
caaacccagaaaccgaggctgaaattgatagtaaaataagcagtaaaggaaaacccagagcttaaaattttcggacatttagagatttatattaacagaaattgatggtaaaattgaaaccctcaactttaaattttacagATTGCGTGAGGGCAGAGCCAGTGATTTACAAAACACTGGAGAAATCCGAGAAGAATGCA
GTTCTTCTCAGGGCCTTTGCGGGGAATCGGCCTACATGGCGAAACCCCAGTCATCCATGGAGGGTGGATGGACGCTTCCAATTGAAAGGGTTGCCTACCCTTATCCGTTGGAGTGACGGAGCCATTGCAGGGCGCCTGGAGGACAACGAGGCGCATATTGAATCTCGTATTAGTAAGCTGCTTGAGTAGGGTTATGGTTA
GTAGTATATTAAAGAAATTTACGTTGATAAATAAGTGGACAATAGTGCATTTAGAAACTGGCTTACCTAAATAAATAGTTGTATAAAATTCAATAATTGATTGTGTACTATGAGTTCTTCAACAAGGTGGTTTCAGGCTACCCTCTATCAGAAGAATTAGATCTTATTGTAGTTTTCTGGTTCTTTTCTCCGCATTCTTT
TTCTTAGCAGGTAGGGTGTCATGGTTATCATGGGCATGATTAGTTATGGGGTTTATTATTTTCATAATAGAGGGGATTTTCGATGGTCTGGCAAGGATGAAGCCTGAAGGTCATCTCTGATGGAGTATTTGAAATAGAGTTTTGCTAGGTAATTGGTTTATGAGAATGGAGCTAAGACAGATATGAGGAATGAAAATTTT
CAAATATGAACGGTCTACTGTAAAGAATACTTTACTTTTTAAAGTAAAGTATACATTAATTATAGATGAATGTTCACGTTAAAAACTGA