sp|Q9C5Y4|SMC21_ARATH ----> Structural maintenance of chromosomes protein 2-1
Intron 1 GTGCTTCTCT ... TGTGATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.87 | 121 | 11 | 30 |
| A2 | 20 | 84 | 7 | 21 |
| A3 | 17.39 | 114 | 11 | 24 |
| A4 | 22.34 | 73 | 6 | 21 |
| A5 | 33.33 | 20 | 0 | 10 |
| A6 | 33.33 | 2 | 0 | 1 |
| A7 | 17.8 | 97 | 3 | 21 |
| A8 | 24.35 | 87 | 4 | 28 |
| A9 | 16.67 | 100 | 8 | 20 |
| A10 | 12.5 | 91 | 4 | 13 |
>TRINITY_DN135583_c4_g1_i4 from sample A1 / Example spliced isoformGAAACTCTCAAGGCCGAGCAGAAGGCTGCTACAAAGTAACCTGAGGGAAATAGCTCCTGTTCAGAATTATCCTATATTTCGGCCTTCTTGTGGATATGCTATAACTGCATAAAAACATTCAAGACATTGAAAACTCTATCAAAGAAAGAGATGCCGCTGTTCAAAGGGCTGATGATGGAGCAGCTGATCTGAAGAAGAAA
GTGGAGGATCTTACAAAGACCTTAGAAGATTATGAAAAGGAATACCAGGGAGTGCTAGCAGGGAAGAGCAGTGGAGATGAGGAAAAATGTCTTGATGATCAACTTGTAGATGCAAAAGCTGCAGTTGGTAGTGCTGAAACTGAAGCCAAACAACTGAAGACAAAAATTAACCACTTGGAGAAAGAATTAAAAGATAAGAA
GAAGCAATTACTATCAATGCAACAAGAGGCGGTTGCAGTTGAGAGGGAGCTAGAATCCAAAAGACAAGAAGTTCAGAAAATAAAGGCAGCATTAGAAGGTGTGGGTTATGAAGAAGGGCGAATGGAGGTGTTGGAACAGGAGCGTATGCAAGAGTCAGAGGCAGTGAAGAAGTTGAAGGCTGATGTCAGGAGTCTCTCAG
CTCAATTAGGAAATGTTCAATTTACCTACAATGATCCTTCAAAAAACTTTGATAGGTCTAAGGTCAAAGGGGTTGTGGCACAACTTATAGAAGTGAAAGACAACTCAACAATGACTGCATTGGAGGTTGCCGCAGGAGGAAAACTGTATAACGTGGTAGTGGATACAGAGCAAACAGGAAAGCTACTACTTGAAAAAGGT
GGTCTTCGTAAAAGGGTGACAATTATTCCTTTGAACAAAATTGAAGCCCGCACCATTCCTGCAAAAACTCAACATGCAGCAGCTAAATTGGTTGGTCCAGGAAATGCAAGATTGGCACTCTCTTTGGTTGGATATCAAGAGGAGATTGAAGCAGCTATGACCTTTGTATTTGGTAGTACCTTTGTTTGTAGCAGTATGGA
ATCTGCAAAAGAGGTTGCTTTTCATAGAGAAATAAGATGTCCTAGTGTAACCCTTGAAGGTGACATCTTTCAGCCAAGTGGTCTTCTTACAGGAGGAAGTCGCAAGGGAGGTGGTGAGTTGTTAAGGAGACTCCATGCATTGTCAGAAGCAGAGTCCAAGCTTGCTTTTCATCAAGATCGACTAGCAAAAATTGAATCAG
AGATTGCAAGCTTGCTGCCCTTGCACAAAAAGTTCACACATTTGAAATCTCAGCTAGAGCTAAAGTCCTACGATTTGTCACTTTTTGTTAACAGAGCACAGCAGAACGAGCATCATAAGTTAAGTGAATTAGTAGCAGGAATGGAGCAGGAGCTTGAAGAAGCAAAGATGGAGGCAAAAACTAAGGAGGAACTTCACAAA
AATTGTGTTTCTAAAGTTTCTGTTCTTGAAAAGGCAATTAAAGAACACAGTCGAGATCGTGAAAGTAAACTTGCGAGTTTGGATAAAAAGATAAAGTCTGTGAAGCAGCAAATGGCATCGGCTTCAAAGGAGCTCAAGGGTCATGAAGGTGAAAAAGAGAGGTTAGTTATGGAAAAGGAAGCAGTTATTCAGGAAAAGGC
ATCACTTGAAGCCCAGTTAGTCTCGTCTGAATCTCAAATTAAAGTCCTGGCAGATGAGTTAGAGAAGCTAGTTAGTAAGGTGGACCTCATGAAGAAAGATTATGATCAAGCTCAAGAAGAACTCAACGTGAACCGTGCAAAAATCAAAGAATGCGATTCTCAAATCAACTCTCTTTCAAAATTGCAACACAAGCTTCAGC
AGAAATTGAGTGATGGAAATATAGAAGGAAAGAAATTGGATAATGAGATCAAACGTCTGGAATTAGAACAGAAGGAGTGTTCTTCAAAAGTAGACAGGTTACTTGAGAAGCATGAGTGGATTGCAACAGAGAAACAATTATTTGGAAAGGGGGGGACTGACTATGATTTTTCAGCTCGTGATCCAAGAAAAGCAAGAGAT
GAATATGATGGTTTACAATCTGAACAATCAAATCTGGAGAAGAGAGTCAATAAGAAGGTGATGACAATGTTTGAAAAAGCAGAGGATGAATATAAGGATCTCCTATCCAAAAAGAACATCATTGAGAATGACAAATCAAAAATCCACAAAGTAATTTCAGAACTTGATGAAAAGAAGAAAGAAACTCTGAAAGTGACATG
GGTGAAAGTGAACAAGGACTTTGGATCTATTTTTTCTACCCTATTGCCAGGAACAATGGCAAAACTAGATCCCCAAGAAGGTTGTGACTTTTTAGATGGCCTTGAGGTTCGAGTTGCATTTGGAAGTGTATGGAAGCAGTCTTTGTCAGAGTTAAGTGGAGGGCAACGTTCTCTTCTCGCTCTATCACTAATCTTGGCAT
TGTTACTTTTCAAGCCTGCTCCTCTGTACATTCTTGATGAGGTCGATGCTGCACTTGACCTCAGCCATACACAAAATATTGGAAGGATGATAAAAGCTCATTTCCCACATTCGCAGTTTATCGTTGTTTCGCTAAAGGAAGGCATGTTTAACAATGCCAATGTAATATTCCGGACAAAGTTTGTGGATGGAGTGTCTACG
GTAACAAGAACGGTGCCAGCAAAACAAAATAAAAAGA
>TRINITY_DN135583_c4_g1_i7 from sample A1 / Example unspliced isoform:CCGATTTATGACTGATTCATTATCGATTCCGAGTTGACCCTCGACTGATTCTGAGTCCGATTCTGATTTTTCAAACATTGGGTTCAACATAAAAGTACTCTTGCCTAAGGGCTTCCTTTTATTTCCTTTGGTTCAAATGCATAAAATGGGGCCTCTTGGTTGACTCCAACCTATATCTGTGATGGGTATTAGTGCATTTC
ATTGGTTTCTTGTAGTATTTGTATTGTCTAAAATCCTACATAAAAGTGACCTTTGTGGATATTATATGATTTTTTTATGCAGATTGCAAGCTTGCTGCCCTTGCACAAAAAGTTCACACATTTGAAATCTCAGCTAGAGCTAAAGTCCTACGATTTGTCACTTTTTGTTAACAGAGCACAGCAGAACGAGCATCATAAGg
tgcttctcttacatttttttcttttcattttctttacatggataagaagatattctgtaatatgtctaaaacccatttatatccaatacatgcataatcagtaaccaggctgacaaggcttttgtggtcgattgtttatgcttaactttgttttgtccatttgtgtttggactggctttaaatgtttcttttgattatgt
aagctatttaataatcttgtgttagtgcattcctgtgatgtagTTAAGTGAATTAGTAGCAGGAATGGAGCAGGAGCTTGAAGAAGCAAAGATGGAGGCAAAAACTAAGGAGGAACTTCACAAAAATTGTGTTTCTAAAGTTTCTGTTCTTGAAAAGGCAATTAAAGAACACAGTCGAGATCGTGAAAGTAAACTTGCGA
GTTTGGATAAAAAGATAAAGTCTGTGAAGCAGCAAATGGCATCGGCTTCAAAGGAGCTCAAGGGTCATGAAGGTGAAAAAGAGAGGTTAGTTATGGAAAAGGAAGCAGTTATTCAGGAAAAGGCATCACTTGAAGCCCAGTTAGTCTCGTCTGAATCTCAAATTAAAGTCCTGGCAGATGAGTTAGAGAAGCTAGTTAGT
AAGGTGGACCTCATGAAGAAAGATTATGATCAAGCTCAAGAAGAACTCAACGTGAACCGTGCAAAAATCAAAGAATGCGATTCTCAAATCAACTCTCTTTCAAAATTGCAACACAAGCTTCAGCAGAAATTGAGTGATGGAAATATAGAAGGAAAGAAATTGGATAATGAG
Intron 2 GTATGTTCAG ... ACTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.06 | 118 | 16.6 | 22 |
| A2 | 14.12 | 73 | 14 | 10 |
| A3 | 10.2 | 66 | 5 | 10 |
| A4 | 9.57 | 52 | 5 | 6 |
| A5 | 9.68 | 14 | 1 | 2 |
| A6 | 12.7 | 134 | 11 | 28 |
| A7 | 11.07 | 360 | 34.6 | 55 |
| A8 | 11.51 | 534 | 57.9 | 81 |
| A9 | 12.6 | 280 | 33.8 | 47 |
| A10 | 10.86 | 234 | 28 | 29 |
>TRINITY_DN135583_c4_g1_i1 from sample A1 / Example spliced isoformAAATTATCTACTTGTAACGCGACAATTTCCGTTGGGCTCAAAATTCAAAATGTCCATCCCTTCAACTTTTCCCGCCTCTACAGAGAAATCTGACAATCAAAAGCGATGAACCAGATATCCATTGCAAACGTGCATTTGATAGTAACTCAGAAGGAATTCTTTTGCTTCCTTCCTGCTAACAAAACACAGATCAGGGTTTC
GGTCCGCCGTGCGGTTGTTGGACTTGCATTTTCACAGCCATGTATGTCAAGGAGATTTGTCTGGAGGGTTTCAAGTCCTATGCCACGAGAACGGTGGTGCCGAATTTCGATCCGTTTTTCAACGCCATAACAGGGCTGAACGGCTCCGGGAAATCGAACATCCTGGATTCCATCTGCTTCGTGCTGGGAATCACCAATCT
GCAGCAGGTGAGGGCGTCAAACTTGCAGGAACTGGTGTACAAGCAGGGCCAGGCTGGAGTCACCAAGGCCACCGTCTCCATTGTCTTCGACAACTCCAACCGAAGCCGCAGCCCCATAGGTTACGAGGACTGCAGCGAGATCACCGTCACTCGACAGATTGTTGTTGGTGGCAGAAATAAGTACTTAATTAATGGCCACC
TTGCACAGCCGTCACGTGTCCAGAACCTTTTCCATTCTGTCCAGCTCAATGTAAACAATCCACATTTTCTCATTATGCAAGGGCGCATTACTAAAGTTCTCAACATGAAGCCTCCAGAAATTTTGTCAATGCTCGAGGAGGCAGCAGGGACAAGAATGTATGAAATGAAAAAGGAAGCTGCTCTGAAAACACTTGAAAAG
AAGCAAACCAAAGTGAATGAGATAGATAATGTGTTGGCTCAAGAGATTCTACCTGCTCTAGAGAAGTTGAGGAAAGAGCGGGCTCAGTATATGCAATGGGCCAATGGTAATGCTGAACTTGATCGACTTAAGAGGTTTTGCATTGCTTATGAATTTGTACAAGCAGAGAAAGTTAAGGAAGCTGCTATGAGCGGGGTTGA
GCAAATGAAATCAAATATTCTACAACTTAAGAGCAATATGGAACAATTACAAATAGAAATAGATGAGAAGGAAAAATCAATTTCAGATTTAACTGCAGAAAAAGAGAAGCAAATGGGTGGAGAATTAAAAGTTCTATCTGAAAAGGTAGACAAACTCTCCAATGTGCTGGTTAAAGAAACTTCTGCACTCACTAATCAGA
AAGAAACTCTCAAGGCCGAGCAGAAAGCTGCTACAAAGCTGCATAAAAACATTCAAGACATTGAAAACTCTATCAAAGAAAGAGATGCCGCTGTTCAAAGGGCTGATGATGGAGCAGCTGATCTGAAGAAGAAAGTGGAGGATCTTACAAAGACCTTAGAAGATTATGAAAAGGAATACCAGGGAGTGCTAGCAGGGAAG
AGCAGTGGAGATGAGGAAAAATGTCTTGATGATCAACTTGTAGATGCAAAAGCTGCAGTTGGTAGTGCTGAAACTGAAGCCAAACAACTGAAGACAAAAATTAACCACTTGGAGAAAGAATTAAAAGATAAGAAGAAGCAATTACTATCAATGCAACAAGAGGCGGTTGCAGTTGAGAGGGAGCTAGAATCCAAAAGACA
AGAAGTTCAGAAAATAAAGGCAGCATTAGAAGGTGTGGGTTATGAAGAAGGGCGAATGGAGGTGTTGGAACAGGAGCGTATGCAAGAGTCAGAGGCAGTGAAGAAGTTGAAGGCTGATGTCAGGAGTCTCTCAGCTCAATTAGGAAATGTTCAATTTACCTACAATGATCCTTCAAAAAACTTTGATAGGTCTAAGGTCA
AAGGGGTTGTGGCACAACTTATAGAAGTGAAAGACAACTCAACAATGACTGCATTGGAGGTTGCCGCAGGAGGAAAACTGTATAACGTGGTAGTGGATACAGAGCAAACAGGAAAGCTACTACTTGAAAAAGGTGGTCTTCGTAAAAGGGTGACAATTATTCCTTTGAACAAAATTGAAGCCCGCACCATTCCTGCAAAA
ACTCAACATGCAGCAGCTAAATTGGTTGGTCCAGGAAATGCAAGATTGGCACTCTCTTTGGTTGGATATCAAGAGGAGATTGAAGCAGCTATGACCTTTGTATTTGGTAGTACCTTTGTTTGTAGCAGTATGGAATCTGCAAAAGAGGTTGCTTTTCATAGAGAAATAAGATGTCCTAGTGTAACCCTTGAAGGTGACAT
CTTTCAGCCAAGTGGTCTTCTTACAGGAGGAAGTCGCAAGGGAGGTGGTGAGTTGTTAAGGAGACTCCATGCATTGTCAGAAGCAGAGTCCAAGCTTGCTTTTCATCAAGATCGACTAGCAAAAATTGAATCAGAGATTGCAAGCTTGCTGCCCTTGCACAAAAAGTTCACACATTTGAAATCTCAGCTAGAGCTAAAGT
CCTACGATTTGTCACTTTTTGTTAACAGAGCACAGCAGAACGAGCATCATAAGTTAAGTGAATTAGTAGCAGGAATGGAGCAGGAGCTTGAAGAAGCAAAGATGGAGGCAAAAACTAAGGAGGAACTTCACAAAAATTGTGTTTCTAAAGTTTCTGTTCTTGAAAAGGCAATTAAAGAACACAGTCGAGATCGTGAAAGT
AAACTTGCGAGTTTGGATAAAAAGATAAAGTCTGTGAAGCAGCAAATGGCATCGGCTTCAAAGGAGCTCAAGGGTCATGAAGGTGAAAAAGAGAGGTTAGTTATGGAAAAGGAAGCAGTTATTCAGGAAAAGGCATCACTTGAAGCCCAGTTAGTCTCGTCTGAATCTCAAATTAAAGTCCTGGCAGATGAGTTAGAGAA
GCTAGTTAGTAAGGTGGACCTCATGAAGAAAGATTATGATCAAGCTCAAGAAGAACTCAACGTGAACCGTGCAAAAATCAAAGAATGCGATTCTCAAATCAACTCTCTTTCAAAATTGCAACACAAGCTTCAGCAGAAATTGAGTGATGGAAATATAGAAGGAAAGAAATTGGATAATGAGATCAAACGTCTGGAATTAG
AACAGAAGGAGTGTTCTTCAAAAGTAGACAGGTTACTTGAGAAGCATGAGTGGATTGCAACAGAGAAACAATTATTTGGAAAGGGGGGGACTGACTATGATTTTTCAGCTCGTGATCCAAGAAAAGCAAGAGATGAATATGATGGTTTACAATCTGAACAATCAAATCTGGAGAAGAGAGTCAATAAGAAGGTGATGACA
ATGTTTGAAAAAGCAGAGGATGAATATAAGGATCTCCTATCCAAAAAGAACATCATTGAGAATGACAAATCAAAAATCCACAAAGTAATTTCAGAACTTGATGAAAAGAAGAAAGAAACTCTGAAAGTGACATGGGTGAAAGTGAACAAGGACTTTGGATCTATTTTTTCTACCCTATTGCCAGGAACAATGGCAAAACT
AGATCCCCAAGAAGGTTGTGACTTTTTAGATGGCCTTGAGGTTCGAGTTGCATTTGGAAGTGTATGGAAGCAGTCTTTGTCAGAGTTAAGTGGAGGGCAACGTTCTCTTCTCGCTCTATCACTAATCTTGGCATTGTTACTTTTCAAGCCTGCTCCTCTGTACATTCTTGATGAGGTCGATGCTGCACTTGACCTCAGCC
ATACACAAAATATTGGAAGGATGATAAAAGCTCATTTCCCACATTCGCAGTTTATCGTTGTTTCGCTAAAGGAAGGCATGTTTAACAATGCCAATGTAATATTCCGGACAAAGTTTGTGGATGGAGTGTCTACGGTAACAAGAACGGTGCCAGCAAAACAAAATAAAAAGAGTTCAGAGGCCAGCCCTGAGCGGAGGCCA
TTGAAGGAGAATAGGGCAAGATAGAGATCAAACGAGAGCTTATAAACTATTAATCAATCGAATCTCCACCTGCTTGAACAGAAGTTCAAGTCTAATTTCCCATGGGTTGTTTCGTTAGGAAAATCGTTTGTTTGCATCATTTGTCGAAAGAGCTGATTGAAGCTGCGGGCATCTTGAAGAAGACCTATTGCAGGCATCTT
GGTGGCTCATGCGGGCATTTGTTTAAGGATATTGCGGGCACATGGAGGGCTAAGTAAGAAGGGGTAAAGTGGTGTTAAGCCCACTTTGCTAATGTGGCACAAAAGACCAAAATTGTATATATATATTTGTTGATGATAACATGGAATAATATATATATATCATTTGATAAAATGAGATTAAATTTTGACAAGTCAGCCTC
CCAAAAACATGGATAAGTGAAGTATAAATAAAGTTCAATTCGTTGGTTTGAAGTGAATTTGGGGGATGAAAGTGTGGAAGATTTCGGAATGTAGAGTAGCTCTGATTTCGGGGTTTTGAGGAGATGACTGAGGAAGGTTCGGTGATGTAGCAGTAGCAGCAGGAGTAAAGGGAGCAGCAATGAAATATTTTTCTTTTTAT
CTTTGACTCTGGGCAGCAATGATGAAGACATGCTGGAGACAGGACAGCAGTAAGGGCAGTTTTTGATGTGCTTAGAATAATGACATGAAGATGTATTTGATTTGCTCATAGACAGAATTGATGTAATAGAATGATGATCTATATGATGATGTAATGTGATAAATGTGTATGTTGATTACAAGTTGGGTTTTGTATATGTT
TTCTTAGTTGGAGC
>TRINITY_DN135583_c4_g1_i11 from sample A1 / Example unspliced isoform:AAATTATCTACTTGTAACGCGACAATTTCCGTTGGGCTCAAAATTCAAAATGTCCATCCCTTCAACTTTTCCCGCCTCTACAGAGAAATCTGACAATCAAAAGCGATGAACCAGATATCCATTGCAAACGTGCATTTGATAGTAACTCAGAAGGAATTCTTTTGCTTCCTTCCTGCTAACAAAACACAGATCAGGGTTTC
GGTCCGCCGTGCGGTTGTTGGACTTGCATTTTCACAGCCATGTATGTCAAGGAGATTTGTCTGGAGGGTTTCAAGTCCTATGCCACGAGAACGGTGGTGCCGAATTTCGATCCGTTTTTCAACGCCATAACAGGGCTGAACGGCTCCGGGAAATCGAACATCCTGGATTCCATCTGCTTCGTGCTGGGAATCACCAATCT
GCAGCAGGTGAGGGCGTCAAACTTGCAGGAACTGGTGTACAAGCAGGGCCAGGCTGGAGTCACCAAGGCCACCGTCTCCATTGTCTTCGACAACTCCAACCGAAGCCGCAGCCCCATAGGTTACGAGGACTGCAGCGAGATCACCGTCACTCGACAGATTGTTGTTGGTGGCAGAAATAAGTACTTAATTAATGGCCACC
TTGCACAGCCGTCACGTGTCCAGAACCTTTTCCATTCTGTCCAGCTCAATGTAAACAATCCACATTTTCTCATTATGCAAGGGCGCATTACTAAAGTTCTCAACATGAAGCCTCCAGAAATTTTGTCAATGCTCGAGGAGGCAGCAGGGACAAGAATGTATGAAATGAAAAAGGAAGCTGCTCTGAAAACACTTGAAAAG
AAGCAAACCAAAGTGAATGAGATAGATAATGTGTTGGCTCAAGAGATTCTACCTGCTCTAGAGAAGTTGAGGAAAGAGCGGGCTCAGTATATGCAATGGGCCAATGGTAATGCTGAACTTGATCGACTTAAGAGGTTTTGCATTGCTTATGAATTTGTACAAGCAGAGAAAGTTAAGGAAGCTGCTATGAGCGGGGTTGA
GCAAATGAAATCAAATATTCTACAACTTAAGAGCAATATGGAACAATTACAAATAGAAATAGATGAGAAGGAAAAATCAATTTCAGATTTAACTGCAGAAAAAGAGAAGCAAATGGGTGGAGAATTAAAAGTTCTATCTGAAAAGGTAGACAAACTCTCCAATGTGCTGGTTAAAGAAACTTCTGCACTCACTAATCAGA
AAGAAACTCTCAAGGCCGAGCAGAAAGCTGCTACAAAGCTGCATAAAAACATTCAAGACATTGAAAACTCTATCAAAGAAAGAGATGCCGCTGTTCAAAGGGCTGATGATGGAGCAGCTGATCTGAAGAAGAAAGTGGAGGATCTTACAAAGACCTTAGAAGATTATGAAAAGGAATACCAGGGAGTGCTAGCAGGGAAG
AGCAGTGGAGATGAGGAAAAATGTCTTGATGATCAACTTGTAGATGCAAAAGCTGCAGTTGGTAGTGCTGAAACTGAAGCCAAACAACTGAAGACAAAAATTAACCACTTGGAGAAAGAATTAAAAGATAAGAAGAAGCAATTACTATCAATGCAACAAGAGGCGGTTGCAGTTGAGAGGGAGCTAGAATCCAAAAGACA
AGAAGTTCAGAAAATAAAGGCAGCATTAGAAGGTGTGGGTTATGAAGAAGGGCGAATGGAGGTGTTGGAACAGGAGCGTATGCAAGAGTCAGAGGCAGTGAAGAAGTTGAAGGCTGATGTCAGGAGTCTCTCAGCTCAATTAGGAAATGTTCAATTTACCTACAATGATCCTTCAAAAAACTTTGATAGGTCTAAGGTCA
AAGGGGTTGTGGCACAACTTATAGAAGTGAAAGACAACTCAACAATGACTGCATTGGAGGTTGCCGCAGGAGGAAAACTGTATAACGTGGTAGTGGATACAGAGCAAACAGGAAAGCTACTACTTGAAAAAGGTGGTCTTCGTAAAAGGGTGACAATTATTCCTTTGAACAAAATTGAAGCCCGCACCATTCCTGCAAAA
ACTCAACATGCAGCAGCTAAATTGGTTGGTCCAGGAAATGCAAGATTGGCACTCTCTTTGGTTGGATATCAAGAGGAGATTGAAGCAGCTATGACCTTTGTATTTGGTAGTACCTTTGTTTGTAGCAGTATGGAATCTGCAAAAGAGGTTGCTTTTCATAGAGAAATAAGATGTCCTAGTGTAACCCTTGAAGGTGACAT
CTTTCAGCCAAGTGGTCTTCTTACAGGAGGAAGTCGCAAGGGAGGTGGTGAGTTGTTAAGGAGACTCCATGCATTGTCAGAAGCAGAGTCCAAGCTTGCTTTTCATCAAGATCGACTAGCAAAAATTGAATCAGAGATTGCAAGCTTGCTGCCCTTGCACAAAAAGTTCACACATTTGAAATCTCAGCTAGAGCTAAAGT
CCTACGATTTGTCACTTTTTGTTAACAGAGCACAGCAGAACGAGCATCATAAGTTAAGTGAATTAGTAGCAGGAATGGAGCAGGAGCTTGAAGAAGCAAAGATGGAGGCAAAAACTAAGGAGGAACTTCACAAAAATTGTGTTTCTAAAGTTTCTGTTCTTGAAAAGGCAATTAAAGAACACAGTCGAGATCGTGAAAGT
AAACTTGCGAGTTTGGATAAAAAGATAAAGTCTGTGAAGCAGCAAATGGCATCGGCTTCAAAGGAGCTCAAGGGTCATGAAGGTGAAAAAGAGAGGTTAGTTATGGAAAAGGAAGCAGTTATTCAGGAAAAGGCATCACTTGAAGCCCAGTTAGTCTCGTCTGAATCTCAAATTAAAGTCCTGGCAGATGAGTTAGAGAA
GCTAGTTAGTAAGGTGGACCTCATGAAGAAAGATTATGATCAAGCTCAAGAAGAACTCAACGTGAACCGTGCAAAAATCAAAGAATGCGATTCTCAAATCAACTCTCTTTCAAAATTGCAACACAAGCTTCAGCAGAAATTGAGTGATGGAAATATAGAAGGAAAGAAATTGGATAATGAGATCAAACGTCTGGAATTAG
AACAGAAGGAGTGTTCTTCAAAAGTAGACAGGTTACTTGAGAAGCATGAGTGGATTGCAACAGAGAAACAATTATTTGGAAAGGGGGGGACTGACTATGATTTTTCAGCTCGTGATCCAAGAAAAGCAAGAGATGAATATGATGGTTTACAATCTGAACAATCAAATCTGGAGAAGAGAGTCAATAAGAAGGTGATGACA
ATGTTTGAAAAAGCAGAGGATGAATATAAGGATCTCCTATCCAAAAAGAACATCATTGAGAATGACAAATCAAAAATCCACAAAGTAATTTCAGAACTTGATGAAAAGAAGAAAGAAACTCTGAAAGTGACATGGGTGAAAGTGAACAAGGACTTTGGATCTATTTTTTCTACCCTATTGCCAGGAACAATGGCAAAACT
AGATCCCCAAGAAGGTTGTGACTTTTTAGATGGCCTTGAGGTTCGAGTTGCATTTGGAAGTGTATGGAAGCAGTCTTTGTCAGAGTTAAGTGGAGGGCAACGTTCTCTTCTCGCTCTATCACTAATCTTGGCATTGTTACTTTTCAAGCCTGCTCCTCTGTACATTCTTGATGAGGTCGATGCTGCACTTGATCTCAGCC
ATACACAAAATATTGGAAGGATGATAAAAGCTCATTTCCCACATTCGCAGTTTATCGTTGTTTCGCTAAAGGAAGGCATGTTTAACAATGCCAATGTAATATTCCGGACAAAGTTTGTGGATGGAGTGTCTACGGTAACAAGAACGGTGCCAGCAAAACAAAATAAAAAGAATTCAGAGGCCAGCCCTGAGCGgtatgtt
cagctgtatgactttttacagtaacttggttaattttcctgcaaatattagataggaggaaattgtgtttattaattttccattgcctaaaattacttgtgcagGAGGCCATTGAAGGAGAATAGGGCAAGATAGAGATCAAACGAGAGCTTATAAACTATTAATCAATCGAATCTCCACCTGCTTGAACAGAAGTTCAA
GTCTAATTTCCCATGGGTTGTTTCGTTAGGAAAATCGTTTGTTTGCATCATTTGTCGAAAGAGCTGATTGAAG
Intron 3 GTATTCCTTG ... TATATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.69 | 138 | 28 | 53 |
| A2 | 25.56 | 83 | 24 | 33 |
| A3 | 20.7 | 90 | 19 | 28 |
| A4 | 23.29 | 56 | 20 | 14 |
| A5 | 25.71 | 13 | 2 | 7 |
| A6 | 16.67 | 10 | 3 | 1 |
| A7 | 19.74 | 187 | 38 | 54 |
| A8 | 19.34 | 147 | 27.5 | 43 |
| A9 | 23.12 | 133 | 29 | 51 |
| A10 | 22.19 | 121 | 33 | 36 |
>TRINITY_DN135583_c4_g1_i4 from sample A1 / Example spliced isoformGAAACTCTCAAGGCCGAGCAGAAGGCTGCTACAAAGTAACCTGAGGGAAATAGCTCCTGTTCAGAATTATCCTATATTTCGGCCTTCTTGTGGATATGCTATAACTGCATAAAAACATTCAAGACATTGAAAACTCTATCAAAGAAAGAGATGCCGCTGTTCAAAGGGCTGATGATGGAGCAGCTGATCTGAAGAAGAAA
GTGGAGGATCTTACAAAGACCTTAGAAGATTATGAAAAGGAATACCAGGGAGTGCTAGCAGGGAAGAGCAGTGGAGATGAGGAAAAATGTCTTGATGATCAACTTGTAGATGCAAAAGCTGCAGTTGGTAGTGCTGAAACTGAAGCCAAACAACTGAAGACAAAAATTAACCACTTGGAGAAAGAATTAAAAGATAAGAA
GAAGCAATTACTATCAATGCAACAAGAGGCGGTTGCAGTTGAGAGGGAGCTAGAATCCAAAAGACAAGAAGTTCAGAAAATAAAGGCAGCATTAGAAGGTGTGGGTTATGAAGAAGGGCGAATGGAGGTGTTGGAACAGGAGCGTATGCAAGAGTCAGAGGCAGTGAAGAAGTTGAAGGCTGATGTCAGGAGTCTCTCAG
CTCAATTAGGAAATGTTCAATTTACCTACAATGATCCTTCAAAAAACTTTGATAGGTCTAAGGTCAAAGGGGTTGTGGCACAACTTATAGAAGTGAAAGACAACTCAACAATGACTGCATTGGAGGTTGCCGCAGGAGGAAAACTGTATAACGTGGTAGTGGATACAGAGCAAACAGGAAAGCTACTACTTGAAAAAGGT
GGTCTTCGTAAAAGGGTGACAATTATTCCTTTGAACAAAATTGAAGCCCGCACCATTCCTGCAAAAACTCAACATGCAGCAGCTAAATTGGTTGGTCCAGGAAATGCAAGATTGGCACTCTCTTTGGTTGGATATCAAGAGGAGATTGAAGCAGCTATGACCTTTGTATTTGGTAGTACCTTTGTTTGTAGCAGTATGGA
ATCTGCAAAAGAGGTTGCTTTTCATAGAGAAATAAGATGTCCTAGTGTAACCCTTGAAGGTGACATCTTTCAGCCAAGTGGTCTTCTTACAGGAGGAAGTCGCAAGGGAGGTGGTGAGTTGTTAAGGAGACTCCATGCATTGTCAGAAGCAGAGTCCAAGCTTGCTTTTCATCAAGATCGACTAGCAAAAATTGAATCAG
AGATTGCAAGCTTGCTGCCCTTGCACAAAAAGTTCACACATTTGAAATCTCAGCTAGAGCTAAAGTCCTACGATTTGTCACTTTTTGTTAACAGAGCACAGCAGAACGAGCATCATAAGTTAAGTGAATTAGTAGCAGGAATGGAGCAGGAGCTTGAAGAAGCAAAGATGGAGGCAAAAACTAAGGAGGAACTTCACAAA
AATTGTGTTTCTAAAGTTTCTGTTCTTGAAAAGGCAATTAAAGAACACAGTCGAGATCGTGAAAGTAAACTTGCGAGTTTGGATAAAAAGATAAAGTCTGTGAAGCAGCAAATGGCATCGGCTTCAAAGGAGCTCAAGGGTCATGAAGGTGAAAAAGAGAGGTTAGTTATGGAAAAGGAAGCAGTTATTCAGGAAAAGGC
ATCACTTGAAGCCCAGTTAGTCTCGTCTGAATCTCAAATTAAAGTCCTGGCAGATGAGTTAGAGAAGCTAGTTAGTAAGGTGGACCTCATGAAGAAAGATTATGATCAAGCTCAAGAAGAACTCAACGTGAACCGTGCAAAAATCAAAGAATGCGATTCTCAAATCAACTCTCTTTCAAAATTGCAACACAAGCTTCAGC
AGAAATTGAGTGATGGAAATATAGAAGGAAAGAAATTGGATAATGAGATCAAACGTCTGGAATTAGAACAGAAGGAGTGTTCTTCAAAAGTAGACAGGTTACTTGAGAAGCATGAGTGGATTGCAACAGAGAAACAATTATTTGGAAAGGGGGGGACTGACTATGATTTTTCAGCTCGTGATCCAAGAAAAGCAAGAGAT
GAATATGATGGTTTACAATCTGAACAATCAAATCTGGAGAAGAGAGTCAATAAGAAGGTGATGACAATGTTTGAAAAAGCAGAGGATGAATATAAGGATCTCCTATCCAAAAAGAACATCATTGAGAATGACAAATCAAAAATCCACAAAGTAATTTCAGAACTTGATGAAAAGAAGAAAGAAACTCTGAAAGTGACATG
GGTGAAAGTGAACAAGGACTTTGGATCTATTTTTTCTACCCTATTGCCAGGAACAATGGCAAAACTAGATCCCCAAGAAGGTTGTGACTTTTTAGATGGCCTTGAGGTTCGAGTTGCATTTGGAAGTGTATGGAAGCAGTCTTTGTCAGAGTTAAGTGGAGGGCAACGTTCTCTTCTCGCTCTATCACTAATCTTGGCAT
TGTTACTTTTCAAGCCTGCTCCTCTGTACATTCTTGATGAGGTCGATGCTGCACTTGACCTCAGCCATACACAAAATATTGGAAGGATGATAAAAGCTCATTTCCCACATTCGCAGTTTATCGTTGTTTCGCTAAAGGAAGGCATGTTTAACAATGCCAATGTAATATTCCGGACAAAGTTTGTGGATGGAGTGTCTACG
GTAACAAGAACGGTGCCAGCAAAACAAAATAAAAAGA
>TRINITY_DN135583_c4_g1_i12 from sample A1 / Example unspliced isoform:AAATTATCTACTTGTAACGCGACAATTTCCGTTGGGCTCAAAATTCAAAATGTCCATCCCTTCAACTTTTCCCGCCTCTACAGAGAAATCTGACAATCAAAAGCGATGAACCAGATATCCATTGCAAACGTGCATTTGATAGTAACTCAGAAGGAATTCTTTTGCTTCCTTCCTGCTAACAAAACACAGATCAGGGTTTC
GGTCCGCCGTGCGGTTGTTGGACTTGCATTTTCACAGCCATGTATGTCAAGGAGATTTGTCTGGAGGGTTTCAAGTCCTATGCCACGAGAACGGTGGTGCCGAATTTCGATCCGTTTTTCAACGCCATAACAGGGCTGAACGGCTCCGGGAAATCGAACATCCTGGATTCCATCTGCTTCGTGCTGGGAATCACCAATCT
GCAGCAGGTGAGGGCGTCAAACTTGCAGGAACTGGTGTACAAGCAGGGCCAGGCTGGAGTCACCAAGGCCACCGTCTCCATTGTCTTCGACAACTCCAACCGAAGCCGCAGCCCCATAGGTTACGAGGACTGCAGCGAGATCACCGTCACTCGACAGATTGTTGTTGGTGGCAGAAATAAGTACTTAATTAATGGCCACC
TTGCACAGCCGTCACGTGTCCAGAACCTTTTCCATTCTGTCCAGCTCAATGTAAACAATCCACATTTTCTCATTATGCAAGGGCGCATTACTAAAGTTCTCAACATGAAGCCTCCAGAAATTTTGTCAATGCTCGAGGAGGCAGCAGGGACAAGAATGTATGAAATGAAAAAGGAAGCTGCTCTGAAAACACTTGAAAAG
AAGCAAACCAAAGTGAATGAGATAGATAATGTGTTGGCTCAAGAGATTCTACCTGCTCTAGAGAAGTTGAGGAAAGAGCGGGCTCAGTATATGCAATGGGCCAATGGTAATGCTGAACTTGATCGACTTAAGAGGTTTTGCATTGCTTATGAATTTGTACAAGCAGAGAAAGTTAAGGAAGCTGCTATGAGCGGGGTTGA
GCAAATGAAATCAAATATTCTACAACTTAAGAGCAATATGGAACAATTACAAATAGAAATAGATGAGAAGGAAAAATCAATTTCAGATTTAACTGCAGAAAAAGAGAAGCAAATGGGTGGAGAATTAAAAGTTCTATCTGAAAAGGTAGACAAACTCTCCAATGTGCTGGTTAAAGAAACTTCTGCACTCACTAATCAGA
AAGAAACTCTCAAGGCCGAGCAGAAAGCTGCTACAAAGGTAAAAAACAAAATACTCCTTTTGTCTTTGATTGATGATGGGCTGAAATTTCACACCCATTCAGTTCTAACTTCTAACTGGCCAAGAGGACCTCCATTTTTGTTATTATTATCTTTTGTGAGGAACAACTGAAAAAGCTGTATAATTTGTAAAACATGTACA
CAAAAACTAGAGATACTTATCCATAAGACAGTCCAACAAATTCTGTTTAGTCTAACTATAGCACCAGTATTCCTTTCTGCTTTTTAGAGGATATTTACAAAGGATGGATATGTATCTCCCCAGTAAAATGGTCACAAGGACCTACTGAAGAGATTGCCAATAAATGTCTAATGACAGACCCACCAGTACTGAAAACCAGA
GTCCTTATCTGCACAAGACTAAAAGGCACTAAGTTATCTTTGTAAATCAGATTTACCATCTACTACGAAAGGCACTAGTAACTATTGTATGATCTGCTTATAGGATCCCATATTGTTTGACTTTGATCCATACTCATAGTTATACCTAATACATTATCTTTTAATTTGAGTACTGAATACTACCTTTCTCTTTTTTTTAA
TTTATGAGAAAATTACATCTTCTGATTCCTCCTATTTTTCTTTACAAGTAACCTGAGGGAAATAGCTCCTGTTCAGAATTATCCTATATTTCGGCCTTCTTGTGGATATGCTATAACTGCATAAAAACATTCAAGACATTGAAAACTCTATCAAAGAAAGAGATGCCGCTGTTCAAAGGGCTGATGATGGAGCAGCTGAT
CTGAAGAAGAAAGTGGAGGATCTTACAAAGACCTTAGAAGATTATGAAAAGGAATACCAGGGAGTGCTAGCAGGGAAGAGCAGTGGAGATGAGGAAAAATGTCTTGATGATCAACTTGTAGATGCAAAAGCTGCAGTTGGTAGTGCTGAAACTGAAGCCAAACAACTGAAGACAAAAATTAACCACTTGGAGAAAGAATT
AAAAGATAAGAAGAAGCAATTACTATCAATGCAACAAGAGGCGGTTGCAGTTGAGAGGGAGCTAGAATCCAAAAGACAAGAAGTTCAGAAAATAAAGGCAGCATTAGAAGGTGTGGGTTATGAAGAAGGGCGAATGGAGGTGTTGGAACAGGAGCGTATGCAAGAGTCAGAGGCAGTGAAGAAGTTGAAGGCTGATGTCA
GGAGTCTCTCAGCTCAATTAGGAAATGTTCAATTTACCTACAATGATCCTTCAAAAAACTTTGATAGGTCTAAGGTCAAAGGGGTTGTGGCACAACTTATAGAAGTGAAAGACAACTCAACAATGACTGCATTGGAGGTTGCCGCAGGAGGAAAACTGTATAACGTGGTAGTGGATACAGAGCAAACAGGAAAGCTACTA
CTTGAAAAAGGTGGTCTTCGTAAAAGGGTGACAATTATTCCTTTGAACAAAATTGAAGCCCGCACCATTCCTGCAAAAACTCAACATGCAGCAGCTAAATTGGTTGGTCCAGGAAATGCAAGATTGGCACTCTCTTTGGTTGGATATCAAGAGGAGATTGAAGCAGCTATGACCTTTGTATTTGGTAGTACCTTTGTTTG
TAGCAGTATGGAATCTGCAAAAGAGGTTGCTTTTCATAGAGAAATAAGATGTCCTAGTGTAACCCTTGAAGGTGACATCTTTCAGCCAAGTGGTCTTCTTACAGGAGGAAGTCGCAAGGGAGGTGGTGAGTTGTTAAGGAGACTCCATGCATTGTCAGAAGCAGAGTCCAAGCTTGCTTTTCATCAAGATCGACTAGCAA
AAATTGAATCAGAGATTGCAAGCTTGCTGCCCTTGCACAAAAAGTTCACACATTTGAAATCTCAGCTAGAGCTAAAGTCCTACGATTTGTCACTTTTTGTTAACAGAGCACAGCAGAACGAGCATCATAAGTTAAGTGAATTAGTAGCAGGAATGGAGCAGGAGCTTGAAGAAGCAAAGATGGAGGCAAAAACTAAGGAG
GAACTTCACAAAAATTGTGTTTCTAAAGTTTCTGTTCTTGAAAAGGCAATTAAAGAACACAGTCGAGATCGTGAAAGTAAACTTGCGAGTTTGGATAAAAAGATAAAGTCTGTGAAGCAGCAAATGGCATCGGCTTCAAAGGAGCTCAAGGGTCATGAAGGTGAAAAAGAGAGGTTAGTTATGGAAAAGGAAGCAGTTAT
TCAGGAAAAGGCATCACTTGAAGCCCAGTTAGTCTCGTCTGAATCTCAAATTAAAGTCCTGGCAGATGAGTTAGAGAAGCTAGTTAGTAAGGTATGTTGTGGGAACTCTAACTTGTGGACAATTAGTTAACTGTAATTTAACCATGGCTCTAACAATCTTGTATAATGTGCTACTGTTGTCAAAGGTAATGTGAAGTCTA
GTTACAACAATTGAAGTAACCTTGTTCCATATTCAGGTGGACCTCATGAAGAAAGATTATGATCAAGCTCAAGAAGAACTCAACGTGAACCGTGCAAAAATCAAAGAATGCGATTCTCAAATCAACTCTCTTTCAAAATTGCAACACAAGCTTCAGCAGAAATTGAGTGATGGAAATATAGAAGGAAAGAAATTGGATAA
TGAGgtattccttgtcaagtaatctagaagcaatagaagaaatttggtatcatcatatgatgtttctggggcataataatataaaattctaagtgggcaaatatgctgtatatggcagATCAAACGTCTGGAATTAGAACAGAAGGAGTGTTCTTCAAAAGTAGACAGGTTACTTGAGAAGCATGAGTGGATTGCAACAG
AGAAACAATTATTTGGAAAGGGGGGGACTGACTATGATTTTTCAGCTCGTGATCCAAGAAAAGCAAGAGATGAATATGATGGTTTACAATCTGAACAATCAAAGTATACATAAATCATGTCTTTTTGCCTTGCATGAATTATGCTAATACATATCGTTGGCATTTAGGAAATACTTCAAAAGATCTGACATTTTGTTTTT
GCTATCCATGTGGTTTTCTCAGACTACAAATTTTCATTTATATGTTGGCCATTTCTATGCTGTTTTGTACGAAACTGCTGTTTGACTGTCCTGCATTGCCTTTTATAGGATACTTGATTGCCATAAAATAGTCAGTAGTCTGTCCTTTCGTTTTCTTAGGATTAACAATATATATTTTAATGGTGGACCCTGAATTTGTT
GGTTAAAGTCTGGAGAAGAGAGTCAATAAGAAGGTGATGACAATGTTTGAAAAAGCAGAGGATGAATATAAGGATCTCCTATCCAAAAAGAACATCATTGAGGTTTGGGCTAGTTTTTACATTGTTTTCATGTTTATACTGCAACTGATGGTTTTGAAAGGTGTACTTAAAACTTGTGTTCTTTTAAACAGAATGACAAA
TCAAAAATCCACAAAGTAATTTCAGAACTTGATGAAAAGAAGAAAGAAACTCTGAAAGTGACATGGGTGAAAGTGAACAAGGACTTTGGATCTATTTTTTCTACCCTATTGCCAGGAACAATGGCAAAACTAGATCCCCAAGAAGGTTGTGACTTTTTAGATGGCCTTGAGGTTCGAGTTGCATTTGGAAGTGTATGGAA
GCAGTCTTTGTCAGAGTTAAGTGGAGGGCAACGTTCTCTTCTCGCTCTATCACTAATCTTGGCATTGTTACTTTTCAAGCCTGCTCCTCTGTACATTCTTGATGAGGTCGATGCTGCACTTGACCTCAGCCATACACAAAATATTGGAAGGATGATAAAAGCTCATTTCCCACATTCGCAGTTTATCGTTGTTTCGCTAA
AGGAAGGCATGTTTAACAATGCCAATGTAATATTCCGGACAAAGTTTGTGGATGGAGTGTCTACGGTAACAAGAACGGTGCCAGCAAAACAAAATAAAAAGAGTTCAGAGGCCAGCCCTGAGCGGAGGCCATTGAAGGAGAATAGGGCAAGATAGAGATCAAACGAGAGCTTATAAACTATTAATCAATCGAATCTCCAC
CTGCTTGAACAGAAGTTCAAGTCTAATTTCCCATGGGTTGTTTCGTTAGGAAAATCGTTTGTTTGCATCATTTGTCGAAAGAGCTGATTGAAGGTACTATTGCTGTTCAGAGGTTTATTGTAAAGGTCTGGTATATTTAAAAGCATT
Intron 4 GTATGTTGTG ... CCATATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.92 | 195 | 56 | 60 |
| A2 | 21.01 | 156 | 57 | 26 |
| A3 | 22.48 | 169 | 64 | 34 |
| A4 | 23.66 | 71 | 27 | 17 |
| A5 | 27.27 | 12 | 5 | 4 |
| A6 | 20 | 16 | 4 | 4 |
| A7 | 22.72 | 216 | 77 | 50 |
| A8 | 18.3 | 221 | 59 | 40 |
| A9 | 22.46 | 202 | 66 | 51 |
| A10 | 21.45 | 216 | 77 | 41 |
>TRINITY_DN135583_c4_g1_i7 from sample A1 / Example spliced isoformCCGATTTATGACTGATTCATTATCGATTCCGAGTTGACCCTCGACTGATTCTGAGTCCGATTCTGATTTTTCAAACATTGGGTTCAACATAAAAGTACTCTTGCCTAAGGGCTTCCTTTTATTTCCTTTGGTTCAAATGCATAAAATGGGGCCTCTTGGTTGACTCCAACCTATATCTGTGATGGGTATTAGTGCATTTC
ATTGGTTTCTTGTAGTATTTGTATTGTCTAAAATCCTACATAAAAGTGACCTTTGTGGATATTATATGATTTTTTTATGCAGATTGCAAGCTTGCTGCCCTTGCACAAAAAGTTCACACATTTGAAATCTCAGCTAGAGCTAAAGTCCTACGATTTGTCACTTTTTGTTAACAGAGCACAGCAGAACGAGCATCATAAGG
TGCTTCTCTTACATTTTTTTCTTTTCATTTTCTTTACATGGATAAGAAGATATTCTGTAATATGTCTAAAACCCATTTATATCCAATACATGCATAATCAGTAACCAGGCTGACAAGGCTTTTGTGGTCGATTGTTTATGCTTAACTTTGTTTTGTCCATTTGTGTTTGGACTGGCTTTAAATGTTTCTTTTGATTATGT
AAGCTATTTAATAATCTTGTGTTAGTGCATTCCTGTGATGTAGTTAAGTGAATTAGTAGCAGGAATGGAGCAGGAGCTTGAAGAAGCAAAGATGGAGGCAAAAACTAAGGAGGAACTTCACAAAAATTGTGTTTCTAAAGTTTCTGTTCTTGAAAAGGCAATTAAAGAACACAGTCGAGATCGTGAAAGTAAACTTGCGA
GTTTGGATAAAAAGATAAAGTCTGTGAAGCAGCAAATGGCATCGGCTTCAAAGGAGCTCAAGGGTCATGAAGGTGAAAAAGAGAGGTTAGTTATGGAAAAGGAAGCAGTTATTCAGGAAAAGGCATCACTTGAAGCCCAGTTAGTCTCGTCTGAATCTCAAATTAAAGTCCTGGCAGATGAGTTAGAGAAGCTAGTTAGT
AAGGTGGACCTCATGAAGAAAGATTATGATCAAGCTCAAGAAGAACTCAACGTGAACCGTGCAAAAATCAAAGAATGCGATTCTCAAATCAACTCTCTTTCAAAATTGCAACACAAGCTTCAGCAGAAATTGAGTGATGGAAATATAGAAGGAAAGAAATTGGATAATGAG
>TRINITY_DN135583_c4_g1_i12 from sample A1 / Example unspliced isoform:AAATTATCTACTTGTAACGCGACAATTTCCGTTGGGCTCAAAATTCAAAATGTCCATCCCTTCAACTTTTCCCGCCTCTACAGAGAAATCTGACAATCAAAAGCGATGAACCAGATATCCATTGCAAACGTGCATTTGATAGTAACTCAGAAGGAATTCTTTTGCTTCCTTCCTGCTAACAAAACACAGATCAGGGTTTC
GGTCCGCCGTGCGGTTGTTGGACTTGCATTTTCACAGCCATGTATGTCAAGGAGATTTGTCTGGAGGGTTTCAAGTCCTATGCCACGAGAACGGTGGTGCCGAATTTCGATCCGTTTTTCAACGCCATAACAGGGCTGAACGGCTCCGGGAAATCGAACATCCTGGATTCCATCTGCTTCGTGCTGGGAATCACCAATCT
GCAGCAGGTGAGGGCGTCAAACTTGCAGGAACTGGTGTACAAGCAGGGCCAGGCTGGAGTCACCAAGGCCACCGTCTCCATTGTCTTCGACAACTCCAACCGAAGCCGCAGCCCCATAGGTTACGAGGACTGCAGCGAGATCACCGTCACTCGACAGATTGTTGTTGGTGGCAGAAATAAGTACTTAATTAATGGCCACC
TTGCACAGCCGTCACGTGTCCAGAACCTTTTCCATTCTGTCCAGCTCAATGTAAACAATCCACATTTTCTCATTATGCAAGGGCGCATTACTAAAGTTCTCAACATGAAGCCTCCAGAAATTTTGTCAATGCTCGAGGAGGCAGCAGGGACAAGAATGTATGAAATGAAAAAGGAAGCTGCTCTGAAAACACTTGAAAAG
AAGCAAACCAAAGTGAATGAGATAGATAATGTGTTGGCTCAAGAGATTCTACCTGCTCTAGAGAAGTTGAGGAAAGAGCGGGCTCAGTATATGCAATGGGCCAATGGTAATGCTGAACTTGATCGACTTAAGAGGTTTTGCATTGCTTATGAATTTGTACAAGCAGAGAAAGTTAAGGAAGCTGCTATGAGCGGGGTTGA
GCAAATGAAATCAAATATTCTACAACTTAAGAGCAATATGGAACAATTACAAATAGAAATAGATGAGAAGGAAAAATCAATTTCAGATTTAACTGCAGAAAAAGAGAAGCAAATGGGTGGAGAATTAAAAGTTCTATCTGAAAAGGTAGACAAACTCTCCAATGTGCTGGTTAAAGAAACTTCTGCACTCACTAATCAGA
AAGAAACTCTCAAGGCCGAGCAGAAAGCTGCTACAAAGGTAAAAAACAAAATACTCCTTTTGTCTTTGATTGATGATGGGCTGAAATTTCACACCCATTCAGTTCTAACTTCTAACTGGCCAAGAGGACCTCCATTTTTGTTATTATTATCTTTTGTGAGGAACAACTGAAAAAGCTGTATAATTTGTAAAACATGTACA
CAAAAACTAGAGATACTTATCCATAAGACAGTCCAACAAATTCTGTTTAGTCTAACTATAGCACCAGTATTCCTTTCTGCTTTTTAGAGGATATTTACAAAGGATGGATATGTATCTCCCCAGTAAAATGGTCACAAGGACCTACTGAAGAGATTGCCAATAAATGTCTAATGACAGACCCACCAGTACTGAAAACCAGA
GTCCTTATCTGCACAAGACTAAAAGGCACTAAGTTATCTTTGTAAATCAGATTTACCATCTACTACGAAAGGCACTAGTAACTATTGTATGATCTGCTTATAGGATCCCATATTGTTTGACTTTGATCCATACTCATAGTTATACCTAATACATTATCTTTTAATTTGAGTACTGAATACTACCTTTCTCTTTTTTTTAA
TTTATGAGAAAATTACATCTTCTGATTCCTCCTATTTTTCTTTACAAGTAACCTGAGGGAAATAGCTCCTGTTCAGAATTATCCTATATTTCGGCCTTCTTGTGGATATGCTATAACTGCATAAAAACATTCAAGACATTGAAAACTCTATCAAAGAAAGAGATGCCGCTGTTCAAAGGGCTGATGATGGAGCAGCTGAT
CTGAAGAAGAAAGTGGAGGATCTTACAAAGACCTTAGAAGATTATGAAAAGGAATACCAGGGAGTGCTAGCAGGGAAGAGCAGTGGAGATGAGGAAAAATGTCTTGATGATCAACTTGTAGATGCAAAAGCTGCAGTTGGTAGTGCTGAAACTGAAGCCAAACAACTGAAGACAAAAATTAACCACTTGGAGAAAGAATT
AAAAGATAAGAAGAAGCAATTACTATCAATGCAACAAGAGGCGGTTGCAGTTGAGAGGGAGCTAGAATCCAAAAGACAAGAAGTTCAGAAAATAAAGGCAGCATTAGAAGGTGTGGGTTATGAAGAAGGGCGAATGGAGGTGTTGGAACAGGAGCGTATGCAAGAGTCAGAGGCAGTGAAGAAGTTGAAGGCTGATGTCA
GGAGTCTCTCAGCTCAATTAGGAAATGTTCAATTTACCTACAATGATCCTTCAAAAAACTTTGATAGGTCTAAGGTCAAAGGGGTTGTGGCACAACTTATAGAAGTGAAAGACAACTCAACAATGACTGCATTGGAGGTTGCCGCAGGAGGAAAACTGTATAACGTGGTAGTGGATACAGAGCAAACAGGAAAGCTACTA
CTTGAAAAAGGTGGTCTTCGTAAAAGGGTGACAATTATTCCTTTGAACAAAATTGAAGCCCGCACCATTCCTGCAAAAACTCAACATGCAGCAGCTAAATTGGTTGGTCCAGGAAATGCAAGATTGGCACTCTCTTTGGTTGGATATCAAGAGGAGATTGAAGCAGCTATGACCTTTGTATTTGGTAGTACCTTTGTTTG
TAGCAGTATGGAATCTGCAAAAGAGGTTGCTTTTCATAGAGAAATAAGATGTCCTAGTGTAACCCTTGAAGGTGACATCTTTCAGCCAAGTGGTCTTCTTACAGGAGGAAGTCGCAAGGGAGGTGGTGAGTTGTTAAGGAGACTCCATGCATTGTCAGAAGCAGAGTCCAAGCTTGCTTTTCATCAAGATCGACTAGCAA
AAATTGAATCAGAGATTGCAAGCTTGCTGCCCTTGCACAAAAAGTTCACACATTTGAAATCTCAGCTAGAGCTAAAGTCCTACGATTTGTCACTTTTTGTTAACAGAGCACAGCAGAACGAGCATCATAAGTTAAGTGAATTAGTAGCAGGAATGGAGCAGGAGCTTGAAGAAGCAAAGATGGAGGCAAAAACTAAGGAG
GAACTTCACAAAAATTGTGTTTCTAAAGTTTCTGTTCTTGAAAAGGCAATTAAAGAACACAGTCGAGATCGTGAAAGTAAACTTGCGAGTTTGGATAAAAAGATAAAGTCTGTGAAGCAGCAAATGGCATCGGCTTCAAAGGAGCTCAAGGGTCATGAAGGTGAAAAAGAGAGGTTAGTTATGGAAAAGGAAGCAGTTAT
TCAGGAAAAGGCATCACTTGAAGCCCAGTTAGTCTCGTCTGAATCTCAAATTAAAGTCCTGGCAGATGAGTTAGAGAAGCTAGTTAGTAAGgtatgttgtgggaactctaacttgtggacaattagttaactgtaatttaaccatggctctaacaatcttgtataatgtgctactgttgtcaaaggtaatgtgaagtcta
gttacaacaattgaagtaaccttgttccatattcagGTGGACCTCATGAAGAAAGATTATGATCAAGCTCAAGAAGAACTCAACGTGAACCGTGCAAAAATCAAAGAATGCGATTCTCAAATCAACTCTCTTTCAAAATTGCAACACAAGCTTCAGCAGAAATTGAGTGATGGAAATATAGAAGGAAAGAAATTGGATAA
TGAGGTATTCCTTGTCAAGTAATCTAGAAGCAATAGAAGAAATTTGGTATCATCATATGATGTTTCTGGGGCATAATAATATAAAATTCTAAGTGGGCAAATATGCTGTATATGGCAGATCAAACGTCTGGAATTAGAACAGAAGGAGTGTTCTTCAAAAGTAGACAGGTTACTTGAGAAGCATGAGTGGATTGCAACAG
AGAAACAATTATTTGGAAAGGGGGGGACTGACTATGATTTTTCAGCTCGTGATCCAAGAAAAGCAAGAGATGAATATGATGGTTTACAATCTGAACAATCAAAGTATACATAAATCATGTCTTTTTGCCTTGCATGAATTATGCTAATACATATCGTTGGCATTTAGGAAATACTTCAAAAGATCTGACATTTTGTTTTT
GCTATCCATGTGGTTTTCTCAGACTACAAATTTTCATTTATATGTTGGCCATTTCTATGCTGTTTTGTACGAAACTGCTGTTTGACTGTCCTGCATTGCCTTTTATAGGATACTTGATTGCCATAAAATAGTCAGTAGTCTGTCCTTTCGTTTTCTTAGGATTAACAATATATATTTTAATGGTGGACCCTGAATTTGTT
GGTTAAAGTCTGGAGAAGAGAGTCAATAAGAAGGTGATGACAATGTTTGAAAAAGCAGAGGATGAATATAAGGATCTCCTATCCAAAAAGAACATCATTGAGGTTTGGGCTAGTTTTTACATTGTTTTCATGTTTATACTGCAACTGATGGTTTTGAAAGGTGTACTTAAAACTTGTGTTCTTTTAAACAGAATGACAAA
TCAAAAATCCACAAAGTAATTTCAGAACTTGATGAAAAGAAGAAAGAAACTCTGAAAGTGACATGGGTGAAAGTGAACAAGGACTTTGGATCTATTTTTTCTACCCTATTGCCAGGAACAATGGCAAAACTAGATCCCCAAGAAGGTTGTGACTTTTTAGATGGCCTTGAGGTTCGAGTTGCATTTGGAAGTGTATGGAA
GCAGTCTTTGTCAGAGTTAAGTGGAGGGCAACGTTCTCTTCTCGCTCTATCACTAATCTTGGCATTGTTACTTTTCAAGCCTGCTCCTCTGTACATTCTTGATGAGGTCGATGCTGCACTTGACCTCAGCCATACACAAAATATTGGAAGGATGATAAAAGCTCATTTCCCACATTCGCAGTTTATCGTTGTTTCGCTAA
AGGAAGGCATGTTTAACAATGCCAATGTAATATTCCGGACAAAGTTTGTGGATGGAGTGTCTACGGTAACAAGAACGGTGCCAGCAAAACAAAATAAAAAGAGTTCAGAGGCCAGCCCTGAGCGGAGGCCATTGAAGGAGAATAGGGCAAGATAGAGATCAAACGAGAGCTTATAAACTATTAATCAATCGAATCTCCAC
CTGCTTGAACAGAAGTTCAAGTCTAATTTCCCATGGGTTGTTTCGTTAGGAAAATCGTTTGTTTGCATCATTTGTCGAAAGAGCTGATTGAAGGTACTATTGCTGTTCAGAGGTTTATTGTAAAGGTCTGGTATATTTAAAAGCATT
Intron 5 GTATACATAA ... TTGGTTAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.89 | 137 | 43 | 37.2 |
| A2 | 20.95 | 83 | 22 | 17.3 |
| A3 | 15.6 | 92 | 17 | 28.8 |
| A4 | 13.21 | 46 | 7 | 10.8 |
| A5 | 22.73 | 17 | 5 | 4 |
| A6 | 3.7 | 26 | 1 | 3.8 |
| A7 | 22.36 | 243 | 70 | 38.3 |
| A8 | 14.01 | 221 | 36 | 47.5 |
| A9 | 19.1 | 161 | 38 | 27 |
| A10 | 10.79 | 184 | 22.3 | 35.8 |
>TRINITY_DN135583_c4_g1_i4 from sample A1 / Example spliced isoformGAAACTCTCAAGGCCGAGCAGAAGGCTGCTACAAAGTAACCTGAGGGAAATAGCTCCTGTTCAGAATTATCCTATATTTCGGCCTTCTTGTGGATATGCTATAACTGCATAAAAACATTCAAGACATTGAAAACTCTATCAAAGAAAGAGATGCCGCTGTTCAAAGGGCTGATGATGGAGCAGCTGATCTGAAGAAGAAA
GTGGAGGATCTTACAAAGACCTTAGAAGATTATGAAAAGGAATACCAGGGAGTGCTAGCAGGGAAGAGCAGTGGAGATGAGGAAAAATGTCTTGATGATCAACTTGTAGATGCAAAAGCTGCAGTTGGTAGTGCTGAAACTGAAGCCAAACAACTGAAGACAAAAATTAACCACTTGGAGAAAGAATTAAAAGATAAGAA
GAAGCAATTACTATCAATGCAACAAGAGGCGGTTGCAGTTGAGAGGGAGCTAGAATCCAAAAGACAAGAAGTTCAGAAAATAAAGGCAGCATTAGAAGGTGTGGGTTATGAAGAAGGGCGAATGGAGGTGTTGGAACAGGAGCGTATGCAAGAGTCAGAGGCAGTGAAGAAGTTGAAGGCTGATGTCAGGAGTCTCTCAG
CTCAATTAGGAAATGTTCAATTTACCTACAATGATCCTTCAAAAAACTTTGATAGGTCTAAGGTCAAAGGGGTTGTGGCACAACTTATAGAAGTGAAAGACAACTCAACAATGACTGCATTGGAGGTTGCCGCAGGAGGAAAACTGTATAACGTGGTAGTGGATACAGAGCAAACAGGAAAGCTACTACTTGAAAAAGGT
GGTCTTCGTAAAAGGGTGACAATTATTCCTTTGAACAAAATTGAAGCCCGCACCATTCCTGCAAAAACTCAACATGCAGCAGCTAAATTGGTTGGTCCAGGAAATGCAAGATTGGCACTCTCTTTGGTTGGATATCAAGAGGAGATTGAAGCAGCTATGACCTTTGTATTTGGTAGTACCTTTGTTTGTAGCAGTATGGA
ATCTGCAAAAGAGGTTGCTTTTCATAGAGAAATAAGATGTCCTAGTGTAACCCTTGAAGGTGACATCTTTCAGCCAAGTGGTCTTCTTACAGGAGGAAGTCGCAAGGGAGGTGGTGAGTTGTTAAGGAGACTCCATGCATTGTCAGAAGCAGAGTCCAAGCTTGCTTTTCATCAAGATCGACTAGCAAAAATTGAATCAG
AGATTGCAAGCTTGCTGCCCTTGCACAAAAAGTTCACACATTTGAAATCTCAGCTAGAGCTAAAGTCCTACGATTTGTCACTTTTTGTTAACAGAGCACAGCAGAACGAGCATCATAAGTTAAGTGAATTAGTAGCAGGAATGGAGCAGGAGCTTGAAGAAGCAAAGATGGAGGCAAAAACTAAGGAGGAACTTCACAAA
AATTGTGTTTCTAAAGTTTCTGTTCTTGAAAAGGCAATTAAAGAACACAGTCGAGATCGTGAAAGTAAACTTGCGAGTTTGGATAAAAAGATAAAGTCTGTGAAGCAGCAAATGGCATCGGCTTCAAAGGAGCTCAAGGGTCATGAAGGTGAAAAAGAGAGGTTAGTTATGGAAAAGGAAGCAGTTATTCAGGAAAAGGC
ATCACTTGAAGCCCAGTTAGTCTCGTCTGAATCTCAAATTAAAGTCCTGGCAGATGAGTTAGAGAAGCTAGTTAGTAAGGTGGACCTCATGAAGAAAGATTATGATCAAGCTCAAGAAGAACTCAACGTGAACCGTGCAAAAATCAAAGAATGCGATTCTCAAATCAACTCTCTTTCAAAATTGCAACACAAGCTTCAGC
AGAAATTGAGTGATGGAAATATAGAAGGAAAGAAATTGGATAATGAGATCAAACGTCTGGAATTAGAACAGAAGGAGTGTTCTTCAAAAGTAGACAGGTTACTTGAGAAGCATGAGTGGATTGCAACAGAGAAACAATTATTTGGAAAGGGGGGGACTGACTATGATTTTTCAGCTCGTGATCCAAGAAAAGCAAGAGAT
GAATATGATGGTTTACAATCTGAACAATCAAATCTGGAGAAGAGAGTCAATAAGAAGGTGATGACAATGTTTGAAAAAGCAGAGGATGAATATAAGGATCTCCTATCCAAAAAGAACATCATTGAGAATGACAAATCAAAAATCCACAAAGTAATTTCAGAACTTGATGAAAAGAAGAAAGAAACTCTGAAAGTGACATG
GGTGAAAGTGAACAAGGACTTTGGATCTATTTTTTCTACCCTATTGCCAGGAACAATGGCAAAACTAGATCCCCAAGAAGGTTGTGACTTTTTAGATGGCCTTGAGGTTCGAGTTGCATTTGGAAGTGTATGGAAGCAGTCTTTGTCAGAGTTAAGTGGAGGGCAACGTTCTCTTCTCGCTCTATCACTAATCTTGGCAT
TGTTACTTTTCAAGCCTGCTCCTCTGTACATTCTTGATGAGGTCGATGCTGCACTTGACCTCAGCCATACACAAAATATTGGAAGGATGATAAAAGCTCATTTCCCACATTCGCAGTTTATCGTTGTTTCGCTAAAGGAAGGCATGTTTAACAATGCCAATGTAATATTCCGGACAAAGTTTGTGGATGGAGTGTCTACG
GTAACAAGAACGGTGCCAGCAAAACAAAATAAAAAGA
>TRINITY_DN135583_c4_g1_i5 from sample A1 / Example unspliced isoform:AAATTATCTACTTGTAACGCGACAATTTCCGTTGGGCTCAAAATTCAAAATGTCCATCCCTTCAACTTTTCCCGCCTCTACAGAGAAATCTGACAATCAAAAGCGATGAACCAGATATCCATTGCAAACGTGCATTTGATAGTAACTCAGAAGGAATTCTTTTGCTTCCTTCCTGCTAACAAAACACAGATCAGGGTTTC
GGTCCGCCGTGCGGTTGTTGGACTTGCATTTTCACAGCCATGTATGTCAAGGAGATTTGTCTGGAGGGTTTCAAGTCCTATGCCACGAGAACGGTGGTGCCGAATTTCGATCCGTTTTTCAACGCCATAACAGGGCTGAACGGCTCCGGGAAATCGAACATCCTGGATTCCATCTGCTTCGTGCTGGGAATCACCAATCT
GCAGCAGGTGAGGGCGTCAAACTTGCAGGAACTGGTGTACAAGCAGGGCCAGGCTGGAGTCACCAAGGCCACCGTCTCCATTGTCTTCGACAACTCCAACCGAAGCCGCAGCCCCATAGGTTACGAGGACTGCAGCGAGATCACCGTCACTCGACAGATTGTTGTTGGTGGCAGAAATAAGTACTTAATTAATGGCCACC
TTGCACAGCCGTCACGTGTCCAGAACCTTTTCCATTCTGTCCAGCTCAATGTAAACAATCCACATTTTCTCATTATGCAAGGGCGCATTACTAAAGTTCTCAACATGAAGCCTCCAGAAATTTTGTCAATGCTCGAGGAGGCAGCAGGGACAAGAATGTATGAAATGAAAAAGGAAGCTGCTCTGAAAACACTTGAAAAG
AAGCAAACCAAAGTGAATGAGATAGATAATGTGTTGGCTCAAGAGATTCTACCTGCTCTAGAGAAGTTGAGGAAAGAGCGGGCTCAGTATATGCAATGGGCCAATGGTAATGCTGAACTTGATCGACTTAAGAGGTTTTGCATTGCTTATGAATTTGTACAAGCAGAGAAAGTTAAGGAAGCTGCTATGAGCGGGGTTGA
GCAAATGAAATCAAATATTCTACAACTTAAGAGCAATATGGAACAATTACAAATAGAAATAGATGAGAAGGAAAAATCAATTTCAGATTTAACTGCAGAAAAAGAGAAGCAAATGGGTGGAGAATTAAAAGTTCTATCTGAAAAGGTAGACAAACTCTCCAATGTGCTGGTTAAAGAAACTTCTGCACTCACTAATCAGA
AAGAAACTCTCAAGGCCGAGCAGAAAGCTGCTACAAAGCTGCATAAAAACATTCAAGACATTGAAAACTCTATCAAAGAAAGAGATGCCGCTGTTCAAAGGGCTGATGATGGAGCAGCTGATCTGAAGAAGAAAGTGGAGGATCTTACAAAGACCTTAGAAGATTATGAAAAGGAATACCAGGGAGTGCTAGCAGGGAAG
AGCAGTGGAGATGAGGAAAAATGTCTTGATGATCAACTTGTAGATGCAAAAGCTGCAGTTGGTAGTGCTGAAACTGAAGCCAAACAACTGAAGACAAAAATTAACCACTTGGAGAAAGAATTAAAAGATAAGAAGAAGCAATTACTATCAATGCAACAAGAGGCGGTTGCAGTTGAGAGGGAGCTAGAATCCAAAAGACA
AGAAGTTCAGAAAATAAAGGCAGCATTAGAAGGTGTGGGTTATGAAGAAGGGCGAATGGAGGTGTTGGAACAGGAGCGTATGCAAGAGTCAGAGGCAGTGAAGAAGTTGAAGGCTGATGTCAGGAGTCTCTCAGCTCAATTAGGAAATGTTCAATTTACCTACAATGATCCTTCAAAAAACTTTGATAGGTCTAAGGTCA
AAGGGGTTGTGGCACAACTTATAGAAGTGAAAGACAACTCAACAATGACTGCATTGGAGGTTGCCGCAGGAGGAAAACTGTATAACGTGGTAGTGGATACAGAGCAAACAGGAAAGCTACTACTTGAAAAAGGTGGTCTTCGTAAAAGGGTGACAATTATTCCTTTGAACAAAATTGAAGCCCGCACCATTCCTGCAAAA
ACTCAACATGCAGCAGCTAAATTGGTTGGTCCAGGAAATGCAAGATTGGCACTCTCTTTGGTTGGATATCAAGAGGAGATTGAAGCAGCTATGACCTTTGTATTTGGTAGTACCTTTGTTTGTAGCAGTATGGAATCTGCAAAAGAGGTTGCTTTTCATAGAGAAATAAGATGTCCTAGTGTAACCCTTGAAGGTGACAT
CTTTCAGCCAAGTGGTCTTCTTACAGGAGGAAGTCGCAAGGGAGGTGGTGAGTTGTTAAGGAGACTCCATGCATTGTCAGAAGCAGAGTCCAAGCTTGCTTTTCATCAAGATCGACTAGCAAAAATTGAATCAGAGATTGCAAGCTTGCTGCCCTTGCACAAAAAGTTCACACATTTGAAATCTCAGCTAGAGCTAAAGT
CCTACGATTTGTCACTTTTTGTTAACAGAGCACAGCAGAACGAGCATCATAAGTTAAGTGAATTAGTAGCAGGAATGGAGCAGGAGCTTGAAGAAGCAAAGATGGAGGCAAAAACTAAGGAGGAACTTCACAAAAATTGTGTTTCTAAAGTTTCTGTTCTTGAAAAGGCAATTAAAGAACACAGTCGAGATCGTGAAAGT
AAACTTGCGAGTTTGGATAAAAAGATAAAGTCTGTGAAGCAGCAAATGGCATCGGCTTCAAAGGAGCTCAAGGGTCATGAAGGTGAAAAAGAGAGGTTAGTTATGGAAAAGGAAGCAGTTATTCAGGAAAAGGCATCACTTGAAGCCCAGTTAGTCTCGTCTGAATCTCAAATTAAAGTCCTGGCAGATGAGTTAGAGAA
GCTAGTTAGTAAGGTGGACCTCATGAAGAAAGATTATGATCAAGCTCAAGAAGAACTCAACGTGAACCGTGCAAAAATCAAAGAATGCGATTCTCAAATCAACTCTCTTTCAAAATTGCAACACAAGCTTCAGCAGAAATTGAGTGATGGAAATATAGAAGGAAAGAAATTGGATAATGAGGTATTCCTTGTCAAGTAAT
CTAGAAGCAATAGAAGAAATTTGGTATCATCATATGATGTTTCTGGGGCATAATAATATAAAATTCTAAGTGGGCAAATATGCTGTATATGGCAGATCAAACGTCTGGAATTAGAACAGAAGGAGTGTTCTTCAAAAGTAGACAGGTTACTTGAGAAGCATGAGTGGATTGCAACAGAGAAACAATTATTTGGAAAGGGG
GGGACTGACTATGATTTTTCAGCTCGTGATCCAAGAAAAGCAAGAGATGAATATGATGGTTTACAATCTGAACAATCAAAgtatacataaatcatgtctttttgccttgcatgaattatgctaatacatatcgttggcatttaggaaatacttcaaaagatctgacattttgtttttgctatccatgtggttttctcaga
ctacaaattttcatttatatgttggccatttctatgctgttttgtacgaaactgctgtttgactgtcctgcattgccttttataggatacttgattgccataaaatagtcagtagtctgtcctttcgttttcttaggattaacaatatatattttaatggtggaccctgaatttgttggttaaagTCTGGAGAAGAGAGT
CAATAAGAAGGTGATGACAATGTTTGAAAAAGCAGAGGATGAATATAAGGATCTCCTATCCAAAAAGAACATCATTGAGGTTTGGGCTAGTTTTTACATTGTTTTCATGTTTATACTGCAACTGATGGTTTTGAAAGGTGTACTTAAAACTTGTGTTCTTTTAAACAGAATGACAAATCAAAAATCCACAAAGTAATTTC
AGAACTTGATGAAAAGAAGAAAGAAACTCTGAAAGTGACATGGGTGAAAGTGAACAAGGACTTTGGATCTATTTTTTCTACCCTATTGCCAGGAACAATGGCAAAACTAGATCCCCAAGAAGGTTGTGACTTTTTAGATGGCCTTGAGGTTCGAGTTGCATTTGGAAGTGTATGGAAGCAGTCTTTGTCAGAGTTAAGTG
GAGGGCAACGTTCTCTTCTCGCTCTATCACTAATCTTGGCATTGTTACTTTTCAAGCCTGCTCCTCTGTACATTCTTGATGAGGTCGATGCTGCACTTGACCTCAGCCATACACAAAATATTGGAAGGATGATAAAAGCTCATTTCCCACATTCGCAGTTTATCGTTGTTTCGCTAAAGGAAGGCATGTTTAACAATGCC
AATGTAATATTCCGGACAAAGTTTGTGGATGGAGTGTCTACGGTAACAAGAACGGTGCCAGCAAAACAAAATAAAAAGAGTTCAGAGGCCAGCCCTGAGCGGAGGCCATTGAAGGAGAATAGGGCAAGATAGAGATCAAACGAGAGCTTATAAACTATTAATCAATCGAATCTCCACCTGCTTGAACAGAAGTTCAAGTC
TAATTTCCCATGGGTTGTTTCGTTAGGAAAATCGTTTGTTTGCATCATTTGTCGAAAGAGCTGATTGAAGGTACTATTGCTGTTCAGAGGTTTATTGTAAAGGTCTGGTATATTTAAAAGCATT
Intron 6 GTTTGGGCTA ... TTTTAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.14 | 144.4 | 6.7 | 41 |
| A2 | 22.01 | 104.4 | 0.5 | 29.5 |
| A3 | 25.48 | 117.1 | 1.8 | 40 |
| A4 | 20.07 | 75.7 | 2.8 | 19 |
| A5 | 19.86 | 8.1 | 0.5 | 2 |
| A6 | 15.07 | 22.6 | 0 | 4 |
| A7 | 18.42 | 223.7 | 1.8 | 50.5 |
| A8 | 20.35 | 215.4 | 1.9 | 55 |
| A9 | 22.39 | 173.5 | 1.8 | 50 |
| A10 | 20.28 | 208.4 | 2.3 | 53 |
>TRINITY_DN135583_c4_g1_i4 from sample A1 / Example spliced isoformGAAACTCTCAAGGCCGAGCAGAAGGCTGCTACAAAGTAACCTGAGGGAAATAGCTCCTGTTCAGAATTATCCTATATTTCGGCCTTCTTGTGGATATGCTATAACTGCATAAAAACATTCAAGACATTGAAAACTCTATCAAAGAAAGAGATGCCGCTGTTCAAAGGGCTGATGATGGAGCAGCTGATCTGAAGAAGAAA
GTGGAGGATCTTACAAAGACCTTAGAAGATTATGAAAAGGAATACCAGGGAGTGCTAGCAGGGAAGAGCAGTGGAGATGAGGAAAAATGTCTTGATGATCAACTTGTAGATGCAAAAGCTGCAGTTGGTAGTGCTGAAACTGAAGCCAAACAACTGAAGACAAAAATTAACCACTTGGAGAAAGAATTAAAAGATAAGAA
GAAGCAATTACTATCAATGCAACAAGAGGCGGTTGCAGTTGAGAGGGAGCTAGAATCCAAAAGACAAGAAGTTCAGAAAATAAAGGCAGCATTAGAAGGTGTGGGTTATGAAGAAGGGCGAATGGAGGTGTTGGAACAGGAGCGTATGCAAGAGTCAGAGGCAGTGAAGAAGTTGAAGGCTGATGTCAGGAGTCTCTCAG
CTCAATTAGGAAATGTTCAATTTACCTACAATGATCCTTCAAAAAACTTTGATAGGTCTAAGGTCAAAGGGGTTGTGGCACAACTTATAGAAGTGAAAGACAACTCAACAATGACTGCATTGGAGGTTGCCGCAGGAGGAAAACTGTATAACGTGGTAGTGGATACAGAGCAAACAGGAAAGCTACTACTTGAAAAAGGT
GGTCTTCGTAAAAGGGTGACAATTATTCCTTTGAACAAAATTGAAGCCCGCACCATTCCTGCAAAAACTCAACATGCAGCAGCTAAATTGGTTGGTCCAGGAAATGCAAGATTGGCACTCTCTTTGGTTGGATATCAAGAGGAGATTGAAGCAGCTATGACCTTTGTATTTGGTAGTACCTTTGTTTGTAGCAGTATGGA
ATCTGCAAAAGAGGTTGCTTTTCATAGAGAAATAAGATGTCCTAGTGTAACCCTTGAAGGTGACATCTTTCAGCCAAGTGGTCTTCTTACAGGAGGAAGTCGCAAGGGAGGTGGTGAGTTGTTAAGGAGACTCCATGCATTGTCAGAAGCAGAGTCCAAGCTTGCTTTTCATCAAGATCGACTAGCAAAAATTGAATCAG
AGATTGCAAGCTTGCTGCCCTTGCACAAAAAGTTCACACATTTGAAATCTCAGCTAGAGCTAAAGTCCTACGATTTGTCACTTTTTGTTAACAGAGCACAGCAGAACGAGCATCATAAGTTAAGTGAATTAGTAGCAGGAATGGAGCAGGAGCTTGAAGAAGCAAAGATGGAGGCAAAAACTAAGGAGGAACTTCACAAA
AATTGTGTTTCTAAAGTTTCTGTTCTTGAAAAGGCAATTAAAGAACACAGTCGAGATCGTGAAAGTAAACTTGCGAGTTTGGATAAAAAGATAAAGTCTGTGAAGCAGCAAATGGCATCGGCTTCAAAGGAGCTCAAGGGTCATGAAGGTGAAAAAGAGAGGTTAGTTATGGAAAAGGAAGCAGTTATTCAGGAAAAGGC
ATCACTTGAAGCCCAGTTAGTCTCGTCTGAATCTCAAATTAAAGTCCTGGCAGATGAGTTAGAGAAGCTAGTTAGTAAGGTGGACCTCATGAAGAAAGATTATGATCAAGCTCAAGAAGAACTCAACGTGAACCGTGCAAAAATCAAAGAATGCGATTCTCAAATCAACTCTCTTTCAAAATTGCAACACAAGCTTCAGC
AGAAATTGAGTGATGGAAATATAGAAGGAAAGAAATTGGATAATGAGATCAAACGTCTGGAATTAGAACAGAAGGAGTGTTCTTCAAAAGTAGACAGGTTACTTGAGAAGCATGAGTGGATTGCAACAGAGAAACAATTATTTGGAAAGGGGGGGACTGACTATGATTTTTCAGCTCGTGATCCAAGAAAAGCAAGAGAT
GAATATGATGGTTTACAATCTGAACAATCAAATCTGGAGAAGAGAGTCAATAAGAAGGTGATGACAATGTTTGAAAAAGCAGAGGATGAATATAAGGATCTCCTATCCAAAAAGAACATCATTGAGAATGACAAATCAAAAATCCACAAAGTAATTTCAGAACTTGATGAAAAGAAGAAAGAAACTCTGAAAGTGACATG
GGTGAAAGTGAACAAGGACTTTGGATCTATTTTTTCTACCCTATTGCCAGGAACAATGGCAAAACTAGATCCCCAAGAAGGTTGTGACTTTTTAGATGGCCTTGAGGTTCGAGTTGCATTTGGAAGTGTATGGAAGCAGTCTTTGTCAGAGTTAAGTGGAGGGCAACGTTCTCTTCTCGCTCTATCACTAATCTTGGCAT
TGTTACTTTTCAAGCCTGCTCCTCTGTACATTCTTGATGAGGTCGATGCTGCACTTGACCTCAGCCATACACAAAATATTGGAAGGATGATAAAAGCTCATTTCCCACATTCGCAGTTTATCGTTGTTTCGCTAAAGGAAGGCATGTTTAACAATGCCAATGTAATATTCCGGACAAAGTTTGTGGATGGAGTGTCTACG
GTAACAAGAACGGTGCCAGCAAAACAAAATAAAAAGA
>TRINITY_DN135583_c4_g1_i5 from sample A1 / Example unspliced isoform:AAATTATCTACTTGTAACGCGACAATTTCCGTTGGGCTCAAAATTCAAAATGTCCATCCCTTCAACTTTTCCCGCCTCTACAGAGAAATCTGACAATCAAAAGCGATGAACCAGATATCCATTGCAAACGTGCATTTGATAGTAACTCAGAAGGAATTCTTTTGCTTCCTTCCTGCTAACAAAACACAGATCAGGGTTTC
GGTCCGCCGTGCGGTTGTTGGACTTGCATTTTCACAGCCATGTATGTCAAGGAGATTTGTCTGGAGGGTTTCAAGTCCTATGCCACGAGAACGGTGGTGCCGAATTTCGATCCGTTTTTCAACGCCATAACAGGGCTGAACGGCTCCGGGAAATCGAACATCCTGGATTCCATCTGCTTCGTGCTGGGAATCACCAATCT
GCAGCAGGTGAGGGCGTCAAACTTGCAGGAACTGGTGTACAAGCAGGGCCAGGCTGGAGTCACCAAGGCCACCGTCTCCATTGTCTTCGACAACTCCAACCGAAGCCGCAGCCCCATAGGTTACGAGGACTGCAGCGAGATCACCGTCACTCGACAGATTGTTGTTGGTGGCAGAAATAAGTACTTAATTAATGGCCACC
TTGCACAGCCGTCACGTGTCCAGAACCTTTTCCATTCTGTCCAGCTCAATGTAAACAATCCACATTTTCTCATTATGCAAGGGCGCATTACTAAAGTTCTCAACATGAAGCCTCCAGAAATTTTGTCAATGCTCGAGGAGGCAGCAGGGACAAGAATGTATGAAATGAAAAAGGAAGCTGCTCTGAAAACACTTGAAAAG
AAGCAAACCAAAGTGAATGAGATAGATAATGTGTTGGCTCAAGAGATTCTACCTGCTCTAGAGAAGTTGAGGAAAGAGCGGGCTCAGTATATGCAATGGGCCAATGGTAATGCTGAACTTGATCGACTTAAGAGGTTTTGCATTGCTTATGAATTTGTACAAGCAGAGAAAGTTAAGGAAGCTGCTATGAGCGGGGTTGA
GCAAATGAAATCAAATATTCTACAACTTAAGAGCAATATGGAACAATTACAAATAGAAATAGATGAGAAGGAAAAATCAATTTCAGATTTAACTGCAGAAAAAGAGAAGCAAATGGGTGGAGAATTAAAAGTTCTATCTGAAAAGGTAGACAAACTCTCCAATGTGCTGGTTAAAGAAACTTCTGCACTCACTAATCAGA
AAGAAACTCTCAAGGCCGAGCAGAAAGCTGCTACAAAGCTGCATAAAAACATTCAAGACATTGAAAACTCTATCAAAGAAAGAGATGCCGCTGTTCAAAGGGCTGATGATGGAGCAGCTGATCTGAAGAAGAAAGTGGAGGATCTTACAAAGACCTTAGAAGATTATGAAAAGGAATACCAGGGAGTGCTAGCAGGGAAG
AGCAGTGGAGATGAGGAAAAATGTCTTGATGATCAACTTGTAGATGCAAAAGCTGCAGTTGGTAGTGCTGAAACTGAAGCCAAACAACTGAAGACAAAAATTAACCACTTGGAGAAAGAATTAAAAGATAAGAAGAAGCAATTACTATCAATGCAACAAGAGGCGGTTGCAGTTGAGAGGGAGCTAGAATCCAAAAGACA
AGAAGTTCAGAAAATAAAGGCAGCATTAGAAGGTGTGGGTTATGAAGAAGGGCGAATGGAGGTGTTGGAACAGGAGCGTATGCAAGAGTCAGAGGCAGTGAAGAAGTTGAAGGCTGATGTCAGGAGTCTCTCAGCTCAATTAGGAAATGTTCAATTTACCTACAATGATCCTTCAAAAAACTTTGATAGGTCTAAGGTCA
AAGGGGTTGTGGCACAACTTATAGAAGTGAAAGACAACTCAACAATGACTGCATTGGAGGTTGCCGCAGGAGGAAAACTGTATAACGTGGTAGTGGATACAGAGCAAACAGGAAAGCTACTACTTGAAAAAGGTGGTCTTCGTAAAAGGGTGACAATTATTCCTTTGAACAAAATTGAAGCCCGCACCATTCCTGCAAAA
ACTCAACATGCAGCAGCTAAATTGGTTGGTCCAGGAAATGCAAGATTGGCACTCTCTTTGGTTGGATATCAAGAGGAGATTGAAGCAGCTATGACCTTTGTATTTGGTAGTACCTTTGTTTGTAGCAGTATGGAATCTGCAAAAGAGGTTGCTTTTCATAGAGAAATAAGATGTCCTAGTGTAACCCTTGAAGGTGACAT
CTTTCAGCCAAGTGGTCTTCTTACAGGAGGAAGTCGCAAGGGAGGTGGTGAGTTGTTAAGGAGACTCCATGCATTGTCAGAAGCAGAGTCCAAGCTTGCTTTTCATCAAGATCGACTAGCAAAAATTGAATCAGAGATTGCAAGCTTGCTGCCCTTGCACAAAAAGTTCACACATTTGAAATCTCAGCTAGAGCTAAAGT
CCTACGATTTGTCACTTTTTGTTAACAGAGCACAGCAGAACGAGCATCATAAGTTAAGTGAATTAGTAGCAGGAATGGAGCAGGAGCTTGAAGAAGCAAAGATGGAGGCAAAAACTAAGGAGGAACTTCACAAAAATTGTGTTTCTAAAGTTTCTGTTCTTGAAAAGGCAATTAAAGAACACAGTCGAGATCGTGAAAGT
AAACTTGCGAGTTTGGATAAAAAGATAAAGTCTGTGAAGCAGCAAATGGCATCGGCTTCAAAGGAGCTCAAGGGTCATGAAGGTGAAAAAGAGAGGTTAGTTATGGAAAAGGAAGCAGTTATTCAGGAAAAGGCATCACTTGAAGCCCAGTTAGTCTCGTCTGAATCTCAAATTAAAGTCCTGGCAGATGAGTTAGAGAA
GCTAGTTAGTAAGGTGGACCTCATGAAGAAAGATTATGATCAAGCTCAAGAAGAACTCAACGTGAACCGTGCAAAAATCAAAGAATGCGATTCTCAAATCAACTCTCTTTCAAAATTGCAACACAAGCTTCAGCAGAAATTGAGTGATGGAAATATAGAAGGAAAGAAATTGGATAATGAGGTATTCCTTGTCAAGTAAT
CTAGAAGCAATAGAAGAAATTTGGTATCATCATATGATGTTTCTGGGGCATAATAATATAAAATTCTAAGTGGGCAAATATGCTGTATATGGCAGATCAAACGTCTGGAATTAGAACAGAAGGAGTGTTCTTCAAAAGTAGACAGGTTACTTGAGAAGCATGAGTGGATTGCAACAGAGAAACAATTATTTGGAAAGGGG
GGGACTGACTATGATTTTTCAGCTCGTGATCCAAGAAAAGCAAGAGATGAATATGATGGTTTACAATCTGAACAATCAAAGTATACATAAATCATGTCTTTTTGCCTTGCATGAATTATGCTAATACATATCGTTGGCATTTAGGAAATACTTCAAAAGATCTGACATTTTGTTTTTGCTATCCATGTGGTTTTCTCAGA
CTACAAATTTTCATTTATATGTTGGCCATTTCTATGCTGTTTTGTACGAAACTGCTGTTTGACTGTCCTGCATTGCCTTTTATAGGATACTTGATTGCCATAAAATAGTCAGTAGTCTGTCCTTTCGTTTTCTTAGGATTAACAATATATATTTTAATGGTGGACCCTGAATTTGTTGGTTAAAGTCTGGAGAAGAGAGT
CAATAAGAAGGTGATGACAATGTTTGAAAAAGCAGAGGATGAATATAAGGATCTCCTATCCAAAAAGAACATCATTGAGgtttgggctagtttttacattgttttcatgtttatactgcaactgatggttttgaaaggtgtacttaaaacttgtgttcttttaaacagAATGACAAATCAAAAATCCACAAAGTAATTTC
AGAACTTGATGAAAAGAAGAAAGAAACTCTGAAAGTGACATGGGTGAAAGTGAACAAGGACTTTGGATCTATTTTTTCTACCCTATTGCCAGGAACAATGGCAAAACTAGATCCCCAAGAAGGTTGTGACTTTTTAGATGGCCTTGAGGTTCGAGTTGCATTTGGAAGTGTATGGAAGCAGTCTTTGTCAGAGTTAAGTG
GAGGGCAACGTTCTCTTCTCGCTCTATCACTAATCTTGGCATTGTTACTTTTCAAGCCTGCTCCTCTGTACATTCTTGATGAGGTCGATGCTGCACTTGACCTCAGCCATACACAAAATATTGGAAGGATGATAAAAGCTCATTTCCCACATTCGCAGTTTATCGTTGTTTCGCTAAAGGAAGGCATGTTTAACAATGCC
AATGTAATATTCCGGACAAAGTTTGTGGATGGAGTGTCTACGGTAACAAGAACGGTGCCAGCAAAACAAAATAAAAAGAGTTCAGAGGCCAGCCCTGAGCGGAGGCCATTGAAGGAGAATAGGGCAAGATAGAGATCAAACGAGAGCTTATAAACTATTAATCAATCGAATCTCCACCTGCTTGAACAGAAGTTCAAGTC
TAATTTCCCATGGGTTGTTTCGTTAGGAAAATCGTTTGTTTGCATCATTTGTCGAAAGAGCTGATTGAAGGTACTATTGCTGTTCAGAGGTTTATTGTAAAGGTCTGGTATATTTAAAAGCATT
Intron 7 GCAGCTATGA ... TGCAAAAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.8 | 108 | 154 | 130 |
| A2 | 58.22 | 94 | 145 | 117 |
| A3 | 60.71 | 77 | 119 | 119 |
| A4 | 52.02 | 83 | 82 | 98 |
| A5 | 67.31 | 17 | 41 | 29 |
| A6 | 60 | 5 | 7 | 8 |
| A7 | 61.49 | 62 | 97 | 101 |
| A8 | 62.85 | 47 | 79 | 80 |
| A9 | 59.87 | 64 | 92 | 99 |
| A10 | 64.09 | 58 | 108 | 99 |
>TRINITY_DN42880_c1_g1_i7 from sample A9 / Example spliced isoformTTGTAACGCGACAATTTCCGTTGGGCTCAAAATTCAAAATGTCCATCCCTTCAACTTTTCCCGCCTCTACAGAGAAATCTGACAATCAAAAGCGATGAACCAGATATCCATTGCAAACGTGCATTTGATAGTAACTCAGAAGGAATTCTTTTGCTTCCTTCCTGCTAACAAAACACAGATCAGGGTTTCGGTCCGCCGTG
CGGTTGTTGGACTTGCATTTTCACAGCCATGTATGTCAAGGAGATTTGTCTGGAGGGTTTCAAGTCCTATGCCACGAGAACGGTGGTGCCGAATTTCGATCCGTTTTTCAACGCCATAACAGGGCTGAACGGCTCCGGGAAATCGAACATCCTGGATTCCATCTGCTTCGTGCTGGGAATCACCAATCTGCAGCAGGTGA
GGGCGTCAAACTTGCAGGAACTGGTGTACAAGCAGGGCCAGGCTGGAGTCACCAAGGCCACCGTCTCCATTGTCTTCGACAACTCCAACCGAAGCCGCAGCCCCATAGGTTACGAGGACTGCAGCGAGATCACCGTCACTCGACAGATTGTTGTTGGTGGCAGAAATAAGTACTTAATTAATGGCCACCTTGCACAGCCG
TCACGTGTCCAGAACCTTTTCCATTCTGTCCAGCTCAATGTAAACAATCCACATTTTCTCATTATGCAAGGGCGCATTACTAAAGTTCTCAACATGAAGCCTCCAGAAATTTTGTCAATGCTCGAGGAGGCAGCAGGGACAAGAATGTATGAAATGAAAAAGGAAGCTGCTCTGAAAACACTTGAAAAGAAGCAAACCAA
AGTGAATGAGATAGATAATGTGTTGGCTCAAGAGATTCTACCTGCTCTAGAGAAGTTGAGGAAAGAGCGGGCTCAGTATATGCAATGGGCCAATGGTAATGCTGAACTTGATCGACTTAAGAGGTTTTGCATTGCTTATGAATTTGTACAAGCAGAGAAAGTTAAGGAAGCTGCTATGAGCGGGGTTGAGCAAATGAAAT
CAAATATTCTACAACTTAAGAGCAATATGGAACAATTACAAATAGAAATAGATGAGAAGGAAAAATCAATTTCAGATTTAACTGCAGAAAAAGAGAAGCAAATGGGTGGAGAATTAAAAGTTCTATCTGAAAAGGTAGACAAACTCTCCAATGTGCTGGTTAAAGAAACTTCTGCACTCACTAATCAGAAAGAAACTCTC
AAGGCCGAGCAGAAAGCTGCTACAAAGCTGCATAAAAACATTCAAGACATTGAAAACTCTATCAAAGAAAGAGATGCCGCTGTTCAAAGGGCTGATGATGGAGCAGCTGATCTGAAGAAGAAAGTGGAGGATCTTACAAAGACCTTAGAAGATTATGAAAAGGAATACCAGGGAGTGCTAGCAGGGAAGAGCAGTGGAGA
TGAGGAAAAATGTCTTGATGATCAACTTGTAGATGCAAAAGCTGCAGTTGGTAGTGCTGAAACTGAAGCCAAACAACTGAAGACAAAAATTAACCACTTGGAGAAAGAATTAAAAGATAAGAAGAAGCAATTACTATCAATGCAACAAGAGGCGGTTGCAGTTGAGAGGGAGCTAGAATCCAAAAGACAAGAAGTTCAGA
AAATAAAGGCAGCATTAGAAGGTGTGGGTTATGAAGAAGGGCGAATGGAGGTGTTGGAACAGGAGCGTATGCAAGAGTCAGAGGCAGTGAAGAAGTTGAAGGCTGATGTCAGGAGTCTCTCAGCTCAATTAGGAAATGTTCAATTTACCTACAATGATCCTTCAAAAAACTTTGATAGGTCTAAGGTCAAAGGGGTTGTG
GCACAACTTATAGAAGTGAAAGACAACTCAACAATGACTGCATTGGAGGTTGCCGCAGGAGGAAAACTGTATAACGTGGTAGTGGATACAGAGCAAACAGGAAAGCTACTACTTGAAAAAGGTGGTCTTCGTAAAAGGGTGACAATTATTCCTTTGAACAAAATTGAAGCCCGCACCATTCCTGCAAAAACTCAACATGC
AGCAGCTAAATTGGTTGGTCCAGGAAATGCAAGATTGGCACTCTCTTTGGTTGGATATCAAGAGGAGATTGAAGTTGCTTTTCATAGAGAAATAAGATGTCCTAGTGTAACCCTTGAAGGTGACATCTTTCAGCCAAGTGGTCTTCTTACAGGAGGAAGTCGCAAGGGAGGTGGTGAGTTGTTAAGGAGACTCCATGCAT
TGTCAGAAGCAGAGTCCAAGCTTGCTTTTCATCAAGATCGACTAGCAAAAATTGAATCAGAGATTGCAAGCTTGCTGCCCTTGCACAAAAAGTTCACACATTTGAAATCTCAGCTAGAGCTAAAGTCCTACGATTTGTCACTTTTTGTTAACAGAGCACAGCAGAACGAGCATCATAAGTTAAGTGAATTAGTAGCAGGA
ATGGAGCAGGAGCTTGAAGAAGCAAAGATGGAGGCAAAAACTAAGGAGGAACTTCACAAAAATTGTGTTTCTAAAGTTTCTGTTCTTGAAAAGGCAATTAAAGAACACAGTCGAGATCGTGAAAGTAAACTTGCGAGTTTGGATAAAAAGATAAAGTCTGTGAAGCAGCAAATGGCATCGGCTTCAAAGGAGCTCAAGGG
TCATGAAGGTGAAAAAGAGAGGTTAGTTATGGAAAAGGAAGCAGTTATTCAGGAAAAGGCATCACTTGAAGCCCAGTTAGTCTCGTCTGAATCTCAAATTAAAGTCCTGGCAGATGAGTTAGAGAAGCTAGTTAGTAAGGTGGACCTCATGAAGAAAGATTATGATCAAGCTCAAGAAGAACTCAACGTGAACCGTGCAA
AAATCAAAGAATGCGATTCTCAAATCAACTCTCTTTCAAAATTGCAACACAAGCTTCAGCAGAAATTGAGTGATGGAAATATAGAAGGAAAGAAATTGGATAATGAGATCAAACGTCTGGAATTAGAACAGAAGGAGTGTTCTTCAAAAGTAGACAGGTTACTTGAGAAGCATGAGTGGATTGCAACAGAGAAACAATTA
TTTGGAAAGGGGGGGACTGACTATGATTTTTCAGCTCGTGATCCAAGAAAAGCAAGAGATGAATATGATGGTTTACAATCTGAACAATCAAATCTGGAGAAGAGAGTCAATAAGAAGGTGATGACAATGTTTGAAAAAGCAGAGGATGAATATAAGGATCTCCTATCCAAAAAGAACATCATTGAGAATGACAAATCAAA
AATCCACAAAGTAATTTCAGAACTTGATGAAAAGAAGAAAGAAACTCTGAAAGTGACATGGGTGAAAGTGAACAAGGACTTTGGATCTATTTTTTCTACCCTATTGCCAGGAACAATGGCAAAACTAGATCCCCAAGAAGGTTGTGACTTTTTAGATGGCCTTGAGGTTCGAGTTGCATTTGGAAGTGTATGGAAGCAGT
CTTTGTCAGAGTTAAGTGGAGGGCAACGTTCTCTTCTCGCTCTATCACTAATCTTGGCATTGTTACTTTTCAAGCCTGCTCCTCTGTACATTCTTGATGAGGTCGATGCTGCACTTGACCTCAGCCATACACAAAATATTGGAAGGATGATAAAAGCTCATTTCCCACATTCGCAGTTTATCGTTGTTTCGCTAAAGGAA
GGCATGTTTAACAATGCCAATGTAATATTCCGGACAAAGTTTGTGGATGGAGTGTCTACGGTAACAAGAACGGTGCCAGCAAAACAAAATAAAAAGAGTTCAGAGGCCAGCCCTGAGCGGAGGCCATTGAAGGAGAATAGGGCAAGATAGAGATCAAACGAGAGCTTATAAACTATTAATCAATCGAATCTCCACCTGCT
TGAACAGAAGTTCAAGTCTAATTTCCCATGGGTTGTTTCGTTAGGAAAATCGTTTGTTTGCATCATTTGTCGAAAGAGCTGATTGAAGGTACTATTGCTGTTCAGAGGTTTATTGTAAAGGTCTGGTATATTTAAAAGCATTGTGCTATATGTATCTGACAATATTGTTTGACAGTTTGTATATGATACATGAATGTTCA
TTTGTTTGAAAATAATCACATCATATAGAAACTGGATAGAAATATCGCTCTGTTTCTGCAGCACTTTCTTTGTGATAACATCAAGTAAATACTTGTTGATGTTAACATCTTCCGCAGTTGCTAAGAAAGTTTGAATCCTTTGCTTACCAAGGCTTAACTTATTATTTACCAAGTGTAAATCTGAAAATATTGAAAATTTA
GAGTCGCCATCTTTTTGTCATCGTACTTTCTTCAAATCAAGTCTCTGCTTCGTATCTATACATTAAAGTTTTATTACTGCCAGAAGTCATGAAGAGAGTGAGGCCTGGCCTTATTTTCTGCAGTAGATTGCAGGGTGGGAAGAAAATTAAAGGATTGAACCCTGTCTACGTTTAGGTCAGACCTTGTATCTTGGCCTTTG
TTTGCTTTTGAATACGATCCTTAGATGCTTTTTATATGTACTTTCTATTATGGCTGCCTTCCAACATTCTTTCTTTACAGCAAAAATTGGAAAATCATGTTCATGACCAAAAATGATGATTTGTTAAAATTCTATTTTTACCATGCTTGGAAAGTTAGTCATACTGGTTAGAAGAACACGAGTACAAAAACTGG
>TRINITY_DN42880_c1_g1_i4 from sample A9 / Example unspliced isoform:TTGTAACGCGACAATTTCCGTTGGGCTCAAAATTCAAAATGTCCATCCCTTCAACTTTTCCCGCCTCTACAGAGAAATCTGACAATCAAAAGCGATGAACCAGATATCCATTGCAAACGTGCATTTGATAGTAACTCAGAAGGAATTCTTTTGCTTCCTTCCTGCTAACAAAACACAGATCAGGGTTTCGGTCCGCCGTG
CGGTTGTTGGACTTGCATTTTCACAGCCATGTATGTCAAGGAGATTTGTCTGGAGGGTTTCAAGTCCTATGCCACGAGAACGGTGGTGCCGAATTTCGATCCGTTTTTCAACGCCATAACAGGGCTGAACGGCTCCGGGAAATCGAACATCCTGGATTCCATCTGCTTCGTGCTGGGAATCACCAATCTGCAGCAGGTGA
GGGCGTCAAACTTGCAGGAACTGGTGTACAAGCAGGGCCAGGCTGGAGTCACCAAGGCCACCGTCTCCATTGTCTTCGACAACTCCAACCGAAGCCGCAGCCCCATAGGTTACGAGGACTGCAGCGAGATCACCGTCACTCGACAGATTGTTGTTGGTGGCAGAAATAAGTACTTAATTAATGGCCACCTTGCACAGCCG
TCACGTGTCCAGAACCTTTTCCATTCTGTCCAGCTCAATGTAAACAATCCACATTTTCTCATTATGCAAGGGCGCATTACTAAAGTTCTCAACATGAAGCCTCCAGAAATTTTGTCAATGCTCGAGGAGGCAGCAGGGACAAGAATGTATGAAATGAAAAAGGAAGCTGCTCTGAAAACACTTGAAAAGAAGCAAACCAA
AGTGAATGAGATAGATAATGTGTTGGCTCAAGAGATTCTACCTGCTCTAGAGAAGTTGAGGAAAGAGCGGGCTCAGTATATGCAATGGGCCAATGGTAATGCTGAACTTGATCGACTTAAGAGGTTTTGCATTGCTTATGAATTTGTACAAGCAGAGAAAGTTAAGGAAGCTGCTATGAGCGGGGTTGAGCAAATGAAAT
CAAATATTCTACAACTTAAGAGCAATATGGAACAATTACAAATAGAAATAGATGAGAAGGAAAAATCAATTTCAGATTTAACTGCAGAAAAAGAGAAGCAAATGGGTGGAGAATTAAAAGTTCTATCTGAAAAGGTAGACAAACTCTCCAATGTGCTGGTTAAAGAAACTTCTGCACTCACTAATCAGAAAGAAACTCTC
AAGGCCGAGCAGAAAGCTGCTACAAAGCTGCATAAAAACATTCAAGACATTGAAAACTCTATCAAAGAAAGAGATGCCGCTGTTCAAAGGGCTGATGATGGAGCAGCTGATCTGAAGAAGAAAGTGGAGGATCTTACAAAGACCTTAGAAGATTATGAAAAGGAATACCAGGGAGTGCTAGCAGGGAAGAGCAGTGGAGA
TGAGGAAAAATGTCTTGATGATCAACTTGTAGATGCAAAAGCTGCAGTTGGTAGTGCTGAAACTGAAGCCAAACAACTGAAGACAAAAATTAACCACTTGGAGAAAGAATTAAAAGATAAGAAGAAGCAATTACTATCAATGCAACAAGAGGCGGTTGCAGTTGAGAGGGAGCTAGAATCCAAAAGACAAGAAGTTCAGA
AAATAAAGGCAGCATTAGAAGGTGTGGGTTATGAAGAAGGGCGAATGGAGGTGTTGGAACAGGAGCGTATGCAAGAGTCAGAGGCAGTGAAGAAGTTGAAGGCTGATGTCAGGAGTCTCTCAGCTCAATTAGGAAATGTTCAATTTACCTACAATGATCCTTCAAAAAACTTTGATAGGTCTAAGGTCAAAGGGGTTGTG
GCACAACTTATAGAAGTGAAAGACAACTCAACAATGACTGCATTGGAGGTTGCCGCAGGAGGAAAACTGTATAACGTGGTAGTGGATACAGAGCAAACAGGAAAGCTACTACTTGAAAAAGGTGGTCTTCGTAAAAGGGTGACAATTATTCCTTTGAACAAAATTGAAGCCCGCACCATTCCTGCAAAAACTCAACATGC
AGCAGCTAAATTGGTTGGTCCAGGAAATGCAAGATTGGCACTCTCTTTGGTTGGATATCAAGAGGAGATTGAAgcagctatgacctttgtatttggtagtacctttgtttgtagcagtatggaatctgcaaaagagGTTGCTTTTCATAGAGAAATAAGATGTCCTAGTGTAACCCTTGAAGGTGACATCTTTCAGCCAA
GTGGTCTTCTTACAGGAGGAAGTCGCAAGGGAGGTGGTGAGTTGTTAAGGAGACTCCATGCATTGTCAGAAGCAGAGTCCAAGCTTGCTTTTCATCAAGATCGACTAGCAAAAATTGAATCAGAGATTGCAAGCTTGCTGCCCTTGCACAAAAAGTTCACACATTTGAAATCTCAGCTAGAGCTAAAGTCCTACGATTTG
TCACTTTTTGTTAACAGAGCACAGCAGAACGAGCATCATAAGTTAAGTGAATTAGTAGCAGGAATGGAGCAGGAGCTTGAAGAAGCAAAGATGGAGGCAAAAACTAAGGAGGAACTTCACAAAAATTGTGTTTCTAAAGTTTCTGTTCTTGAAAAGGCAATTAAAGAACACAGTCGAGATCGTGAAAGTAAACTTGCGAG
TTTGGATAAAAAGATAAAGTCTGTGAAGCAGCAAATGGCATCGGCTTCAAAGGAGCTCAAGGGTCATGAAGGTGAAAAAGAGAGGTTAGTTATGGAAAAGGAAGCAGTTATTCAGGAAAAGGCATCACTTGAAGCCCAGTTAGTCTCGTCTGAATCTCAAATTAAAGTCCTGGCAGATGAGTTAGAGAAGCTAGTTAGTA
AGGTGGACCTCATGAAGAAAGATTATGATCAAGCTCAAGAAGAACTCAACGTGAACCGTGCAAAAATCAAAGAATGCGATTCTCAAATCAACTCTCTTTCAAAATTGCAACACAAGCTTCAGCAGAAATTGAGTGATGGAAATATAGAAGGAAAGAAATTGGATAATGAGATCAAACGTCTGGAATTAGAACAGAAGGAG
TGTTCTTCAAAAGTAGACAGGTTACTTGAGAAGCATGAGTGGATTGCAACAGAGAAACAATTATTTGGAAAGGGGGGGACTGACTATGATTTTTCAGCTCGTGATCCAAGAAAAGCAAGAGATGAATATGATGGTTTACAATCTGAACAATCAAAGTATACATAAATCATGTCTTTTTGCCTTGCATGAATTATGCTAAT
ACATATTGTTGGCATTTAGGAAATACTTCAAAAGATCCGACATTTTGTTTTTGCTATCCATGTGGTTTTCTCAGACTACAAATTTTCATTTATATGTTGGCCATTTCTATGCTGTTTTGTACGAAACTGCTGTTTGACTGTCCTGCATTGCCTTTTATAGGATACTTGATTGCCATAAAATAGTCAGTAGTCTGTCCTTT
CGTTTTCTTAGGATTAACAATATATATTTTAATGGTGGACCCTGAATTTGTTGGTTAAAGTCTGGAGAAGAGAGTCAATAAGAAGGTGATGACAATGTTTGAAAAAGCAGAGGATGAATATAAGGATCTCCTATCCAAAAAGAACATCATTGAGAATGACAAATCAAAAATCCACAAAGTAATTTCAGAACTTGATGAAA
AGAAGAAAGAAACTCTGAAAGTGACATGGGTGAAAGTGAACAAGGACTTTGGATCTATTTTTTCTACCCTATTGCCAGGAACAATGGCAAAACTAGATCCCCAAGAAGGTTGTGACTTTTTAGATGGCCTTGAGGTTCGAGTTGCATTTGGAAGTGTATGGAAGCAGTCTTTGTCAGAGTTAAGTGGAGGGCAACGTTCT
CTTCTCGCTCTATCACTAATCTTGGCATTGTTACTTTTCAAGCCTGCTCCTCTGTACATTCTTGATGAGGTCGATGCTGCACTTGACCTCAGCCATACACAAAATATTGGAAGGATGATAAAAGCTCATTTCCCACATTCGCAGTTTATCGTTGTTTCGCTAAAGGAAGGCATGTTTAACAATGCCAATGTAATATTCCG
GACAAAGTTTGTGGATGGAGTGTCTACGGTAACAAGAACGGTGCCAGCAAAACAAAATAAAAAGAGTTCAGAGGCCAGCCCTGAGCGGAGGCCATTGAAGGAGAATAGGGCAAGATAGAGATCAAACGAGAGCTTATAAACTATTAATCAATCGAATCTCCACCTGCTTGAACAGAAGTTCAAGTCTAATTTCCCATGGG
TTGTTTCGTTAGGAAAATCGTTTGTTTGCATCATTTGTCGAAAGAGCTGATTGAAGGTACTATTGCTGTTCAGAGGTTTATTGTAAAGGTCTGGTATATTTAAAAGCATTGTGCTATATGTATCTGACAATATTGTTTGACAGTTTGTATATGATACATGAATGTTCATTTGTTTGAAAATAATCACATCATATAGAAAC
TGGATAGAAATATCGCTCTGTTTCTGCAGCACTTTCTTTGTGATAACATCAAGTAAATACTTGTTGATGTTAACATCTTCCGCAGTTGCTAAGAAAGTTTGAATCCTTTGCTTACCAAGGCTTAACTTATTATTTACCAAGTGTAAATCTGAAAATATTGAAAATTTAGAGTCGCCATCTTTTTGTCATCGTACTTTCTT
CAAATCAAGTCTCTGCTTCGTATCTATACATTAAAGTTTTATTACTGCCAGAAGTCATGAAGAGAGTGAGGCCTGGCCTTATTTTCTGCAGTAGATTGCAGGGTGGGAAGAAAATTAAAGGATTGAACCCTGTCTACGTTTAGGTCAGACCTTGTATCTTGGCCTTTGTTTGCTTTTGAATACGATCCTTAGATGCTTTT
TATATGTACTTTCTATTATGGCTGCCTTCCAACATTCTTTCTTTACAGCAAAAATTGGAAAATCATGTTCATGACCAAAAATGATGATTTGTTAAAATTCTATTTTTACCATGCTTGGAAAGTTAGTCATACTGGTTAGAAGAACACGAGTACAAAAACTGG