NA ----> NA

Intron 1 GTATGTATTA ... ATTTTGTTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	12.5	7	1	0
A2	14.29	6	1	0
A3	41.67	7	5	2
A4	66.67	3	6	5
A5	64.71	6	11	4
A6	20	12	3	0
A7	32.43	50	24	0
A8	30.77	9	4	0
A9	20.69	23	6	0
A10	23.4	36	11	2

>TRINITY_DN103832_c0_g1_i2 from sample A3 / Example spliced isoform

GGGGGTTCTAGTTCGAGTCCTGTGCCGAGAAATTCTCAATCGGTGTCTGAGGCTGAGGACGGGGCGATGTATATAGCTGGAGGATTTGGCATTGATGGTGGGAATCAAGAAGTCTCGAGGGTTGATTCTGTTTCTGATTCTACAGAAACTTACTTTCAGAAAATGCTGGAGGCAAATCCGGGCAACTCACTTCTGCTAAG
AAACTATGCAAAGTTCCTGCATGAGGTTCAAGGCAACCTTGCCAAGGCAGAGGAGTACTATGAAAGAGCCATACTTGCAAGCCCTGGCGATGGGGAGGTACTCTCTCTTTATGCCAAGCTGATGTGGGAAGTCCGCAGAGATGCTCCTCAGGCCGAGGCTTACTTTGATCAAGCTGTGCAGGCGAGCCCCGATGACTGCT
TTGTTCTTGGCTCTTATGCCCACTTTCTATGGGATTCAGAAGAGGGTGAAGCCGGGGACACTGATTCTGAGACGCAGCAGAGGACAGCTGCCCCGGTGATGTTCTATAATTCTGCAACTGAGGCAGTTGTTTGAAACACTAGTAGCACCTTCTGTGGTCCGTTATTTCTGTCAAGCACAGATTTGCACAACACCCTTCAC
AGGGATGCACAGATGATGAGTGGACTGAGACACCAAGGGAACCTGTCAAGGAGGCAAGAGAATGGAGAATGGTCGGGAAACATGCTAAGTTGGAAAAGAGTTGTTAAAAGCTCTTATGTCTGTTAAAATCGTTAGGGTTTCGTTAGGGTTTTAGGTTATTTATGTACAGAACAGGGATGTGCAACATCTTAGATAGTTGT
TGAGCAGCTATGTCATCCATATAAATAATTGGGAACTCTACTGGAATCACATATGCAATTCATTCGAATGGTTTACACCTCTGTTTTCAACTCAGCGTTTTTCCTTGAACCATTATTTTGTTGCCTCAAGGTTTTTGATGGAGTGAAAGTTGACACCTACAGTGGCCTGCAGGGATTTTGTTGCACATCTTTGCTTTTGA
TAGAAATAACAGACAACACATCCGAAGATTGGAAATTATTTGGTGAGTTTGCAGCTGAGAGATTGGAAGTTAGTAGGATTACTTGCCTGTACAGTATTGCTGGTTAGGATGCAGCAACTATCTTTAGTGTATAAATGTTAGCAAGCATTGTTGGCACAAGTTATCGTTCTGAAGAGGTGAGCCATAATTGCCTTTCTAGC
AATACACTTATCTGCCGTTGCAGAAATTAGATGTTTGACACCTAAAGTTGGATGCTGTGGATGTCTTCTATTCTCCAAAGCTTGTGGAATCTGCATAGTCTCAACCCTAAGCTCCTGCCCACTGTAATTGAAATCTCAGATAGGATTTAATTATGTTGAATAACATCTGTAAATTAAACTATTTAGTAAGAGAGTTAGTT
C

>TRINITY_DN103832_c0_g1_i4 from sample A3 / Example unspliced isoform:

GGGGGTTCTAGTTCGAGTCCTGTGCCGAGAAATTCTCAATCGGTGTCTGAGGCTGAGGACGGGGCGATGTATATAGCTGGAGGATTTGGCATTGATGGTGGGAATCAAGAAGTCTCGAGGGTTGATTCTGTTTCTGATTCTACAGAAACTTACTTTCAGAAAATGCTGGAGGCAAATCCGGGCAACTCACTTCTGCTAAG
AAACTATGCAAAGTTCCTGCATGAGgtatgtattaatcccagcaaacagatttgtattcttctttggtgaatgctataggcttatactgggtgcattttgttagGTTCAAGGCAACCTTGCCAAGGCAGAGGAGTACTATGAAAGAGCTATAGTTGCAAGCCCTGGC