sp|Q9FK07|CLPX1_ARATH ----> CLP protease regulatory subunit CLPX1, mitochondrial


Intron 1 GCTGAAAGCA ... ATATTAGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A150.82303527
A247.65393833
A350272826
A447.13232417
A539.68191213
A647.27292428
A747.17423540
A847.2332930
A945.76322925
A1046.67363132



>TRINITY_DN44741_c2_g5_i1 from sample A6 / Example spliced isoform
TTAGTGTTAGTGTCCGAGAAGCGTAGGGAGTGGCGCCATGTTTCTCCGATGGAAAAGGGTAGGAGAACCGTCCGCGGCAGCCAATTGTATATCCTGGACCTGGAAAACCAAAGGCAGATCTTCTCAAATCCCCAATAGCAATAGTGCAGCTGCAGGGCTTTTGCAGGATGGAGGAGGCGAAGAAGAGAGCAAATGGTGGG
CTTCTTCGAAGGACAATTATTGTTTCAGCAGCTTCAACCATCCGCTGCCTTTTTCGCCGAGGTTCAGCAGTTGCGTCCATCTCGGCACAGTCGCAGAGAAATCTGCCCGCCCGAAGCGGAGAGAAGCCCTAGGGTTTCAAGAGCGCAGCAAATGGGAGGGCGGCCGCGACGATTTCCAGAATCGGCAGCTCAAAGCCGAC
GGGAATTGCCCTCGCTGCGGGAAACAGATGACGGTTTATTTCTCTGCAGCTCCGCATCTCAATATTTTGTCTGAAAAATCCACGCTTTCCGGCCTGTTGGACAACGGCAAGGGCATCGATACGGTAAATCTCTGTCCCAGTTGCAAAACGGCGTATTATTTTCGGCCTCACAAATTGGCTCCATTACAGGGAAATTTCGT
TGAAATAGCATTTAGTGGTAATACTAGTAATCGTAATAGTAGGAGGAGGAATGTGAAGGACGATGACAGTGAAAATTGCACTAGAAGTAGAGGAGGGGATTTTGGCGATACAAATGATGGCGGCAATGTGCAGCTTTCTTTCTGGGAAACCTTGCGGTCGTATGGAGACTCTTACGGTGACCCTCCAGAGCATTGGCAGC
CTCCCGGGAACGGACTTGCTATACCGCCTGCCGTTGCGCTTCAGTCGCCGCCCGGTCCTCCTTACCCGCCTAACACTAATCTGATCCGTTCCCATCTGGGGAGCGGAGGGGGAGGTGGTGATAGCTCTGGCGGATCTGCGGGGGGAGGATTTGGTTCCAGAGATGGTTGGGGAGGGTCCACTTTGGGGAAGGATTTGCCG
ACTCCTCGGGAGATTTGCAAGGGGCTCGACAAATTTGTTGTTGGACAGGAGCGAGCAAAAAAGGTGCTGGCAGTAGCTGTGTACAATCACTACAAGCGGATTTTCCACGAGTCTTTGCAGAAAGGCGGTTGCAAGGGCTTTTCATCGGACGGGCTTGGTGTATCAGACACCAGTCTTCCAGGAGAAGAAACTGATGAGAG
TGATATGGTGGAGCTGGAGAAAAGTAATGTTCTACTCTTGGGTCCTACTGGGTCAGGGAAGACACTGCTTGCAAAAACTCTGGCTAGGTTTGTGAATGTGCCCTTTGTTATTGCGGATGCAACAACCTTAACACAGGCAGGATATGTAGGGGAGGATGTGGAGTCAATTTTGTATAAGCTACTCATGGTTGCCGAATTCA
ATGTTTCAGCAGCTCAACAAGGCATTGTGTATATCGACGAAGTTGATAAAATTACTAAGAAGGGATGTGTCTGGGGAGGGTGTTCAGCAGGCATTACTTAAAATGCTAGAAGGAACAGTTGTAAATGTTCCAGAAAAGGGAGCTCGCAAACATCCACGCGGTGATCATATTCAGATCGATACAAAGGATATTCTCTTTAT
ATGTGGTGGGGCTTTCGTGGATCTAGAGAAAACAATTTCTGAGAGACGACAAGATTCTTCTATTGGATTTGGTGCCCCTGTACGTGCTAACATGAGGGCAGGTGGCCTGACAAATGCTGCAGTGACATCGTCCTTGCTAGAGTCGGTTGAGAGTAGTGATCTCATCGCATATGGCTTAATACCAGAGTTCATTGGACGAT
TTCCTGTCCTTGTTAGCCTCTCAGCTTTGACAGAAGACCAACTTATCCAGGTGCTCACGGAGCCTAGAAATGCACTAGGCAAGCAATACAAGAAAATGTTTGAAATGAACAATGTGAAGTTACATTTCACTGAAGGTGCCCTTAGGCGGATTGCACAAAGGGCAATGGTCAAGAGTACTGGTGCCCGTGGTTTACGCTCT
ATACTCGAGAACCTTTTGACAGATGCCATGTTTGAGATTCCAGATACAAAAACGGGGCAGGATAAAATAGATGCTGTTGTCATTGATGAGGAAGTTTTAGGATCTCCAGATTCACAGGGATGTCGAGCCAAAATACTTCACAGCGAGGGTGCATTGGAACGTTATCTTGCAGAGCATAAACAAAAGGAATCTTTGGTTGT
TACTGAAGGTTCTGATGAGGGTGAACCAGATGTAGATACTGACCTTCCTTCCAGGGCCGCTATGAGTATGTAATATTGTAGCCTGACAAAATCCTTGTGTAGGAGGATGGTAAAAGGATGTACTCTATTTTGTACAGCAGGGGCTGAGAGTTTGTGTATAATCTGGACATTATATTAGGTTTACATGTGCCATTATTCAC
TTGTCTCTAGTGGGCGTCTTGATTGCATGCAATTAAGGTGCATGAATTTGTATAGAAGCTTTCTTTATTTCATTGCTTTTTATGAGGTAATTTATTTTACATCTCATATTTAACTGTAACAGACTTGAGATTAGTTCATTAGGTTGGCTAAATCCAGCTGCTAAATACAAGTAGCAGAAAATTAAATGCTCAATGTACAC
TTTCCAATTTCATGAAATGCATTTGTTAAGCTGCTTCAATGTAACATTGCTGTCTTACATTCTGCACATATTTTGTGAAAGTGTGAATTTTTCAAATAGTAGCATACCGAATGCG


>TRINITY_DN44741_c2_g5_i2 from sample A6 / Example unspliced isoform:
TTAGTGTTAGTGTCCGAGAAGCGTAGGGAGTGGCGCCATGTTTCTCCGATGGAAAAGGGTAGGAGAACCGTCCGCGGCAGCCAATTGTATATCCTGGACCTGGAAAACCAAAGGCAGATCTTCTCAAATCCCCAATAGCAATAGTGCAGCTGCAGGGCTTTTGCAGGATGGAGGAGGCGAAGAAGAGAGCAAATGGTGGG
CTTCTTCGAAGGACAATTATTGTTTCAGCAGCTTCAACCATCCGCTGCCTTTTTCGCCGAGGTTCAGCAGTTGCGTCCATCTCGGCACAGTCGCAGAGAAATCTGCCCGCCCGAAGCGGAGAGAAGCCCTAGGGTTTCAAGAGCGCAGCAAATGGGAGGGCGGCCGCGACGATTTCCAGAATCGGCAGCTCAAAGCCGAC
GGGAATTGCCCTCGCTGCGGGAAACAGATGACGGTTTATTTCTCTGCAGCTCCGCATCTCAATATTTTGTCTGAAAAATCCACGCTTTCCGGCCTGTTGGACAACGGCAAGGGCATCGATACGGTAAATCTCTGTCCCAGTTGCAAAACGGCGTATTATTTTCGGCCTCACAAATTGGCTCCATTACAGGGAAATTTCGT
TGAAATAGCATTTAGTGGTAATACTAGTAATCGTAATAGTAGGAGGAGGAATGTGAAGGACGATGACAGTGAAAATTGCACTAGAAGTAGAGGAGGGGATTTTGGCGATACAAATGATGGCGGCAATGTGCAGCTTTCTTTCTGGGAAACCTTGCGGTCGTATGGAGACTCTTACGGTGACCCTCCAGAGCATTGGCAGC
CTCCCGGGAACGGACTTGCTATACCGCCTGCCGTTGCGCTTCAGTCGCCGCCCGGTCCTCCTTACCCGCCTAACACTAATCTGATCCGTTCCCATCTGGGGAGCGGAGGGGGAGGTGGTGATAGCTCTGGCGGATCTGCGGGGGGAGGATTTGGTTCCAGAGATGGTTGGGGAGGGTCCACTTTGGGGAAGGATTTGCCG
ACTCCTCGGGAGATTTGCAAGGGGCTCGACAAATTTGTTGTTGGACAGGAGCGAGCAAAAAAGGTGCTGGCAGTAGCTGTGTACAATCACTACAAGCGGATTTTCCACGAGTCTTTGCAGAAAGGCGGTTGCAAGGGCTTTTCATCGGACGGGCTTGGTGTATCAGACACCAGTCTTCCAGGAGAAGAAACTGATGAGAG
TGATATGGTGGAGCTGGAGAAAAGTAATGTTCTACTCTTGGGTCCTACTGGGTCAGGGAAGACACTGCTTGCAAAAACTCTGGCTAGGTTTGTGAATGTGCCCTTTGTTATTGCGGATGCAACAACCTTAACACAGGCAGGATATGTAGGGGAGGATGTGGAGTCAATTTTGTATAAGCTACTCATGGTTGCCGAATTCA
ATGTTTCAGCAGCTCAACAAGGCATTGTGTATATCGACGAAGTTGATAAAATTACTAAGAAGgctgaaagcatcaatattagcagGGATGTGTCTGGGGAGGGTGTTCAGCAGGCATTACTTAAAATGCTAGAAGGAACAGTTGTAAATGTTCCAGAAAAGGGAGCTCGCAAACATCCACGCGGTGATCATATTCAGATC
GATACAAAGGATATTCTCTTTATATGTGGTGGGGCTTTCGTGGATCTAGAGAAAACAATTTCTGAGAGACGACAAGATTCTTCTATTGGATTTGGTGCCCCTGTACGTGCTAACATGAGGGCAGGTGGCCTGACAAATGCTGCAGTGACATCGTCCTTGCTAGAGTCGGTTGAGAGTAGTGATCTCATCGCATATGGCTT
AATACCAGAGTTCATTGGACGATTTCCTGTCCTTGTTAGCCTCTCAGCTTTGACAGAAGACCAACTTATCCAGGTGCTCACGGAGCCTAGAAATGCACTAGGCAAGCAATACAAGAAAATGTTTGAAATGAACAATGTGAAGTTACATTTCACTGAAGGTGCCCTTAGGCGGATTGCACAAAGGGCAATGGTCAAGAGTA
CTGGTGCCCGTGGTTTACGCTCTATACTCGAGAACCTTTTGACAGATGCCATGTTTGAGATTCCAGATACAAAAACGGGGCAGGATAAAATAGATGCTGTTGTCATTGATGAGGAAGTTTTAGGATCTCCAGATTCACAGGGATGTCGAGCCAAAATACTTCACAGCGAGGGTGCATTGGAACGTTATCTTGCAGAGCAT
AAACAAAAGGAATCTTTGGTTGTTACTGAAGGTTCTGATGAGGGTGAACCAGATGTAGATACTGACCTTCCTTCCAGGGCCGCTATGAGTATGTAATATTGTAGCCTGACAAAATCCTTGTGTAGGAGGATGGTAAAAGGATGTACTCTATTTTGTACAGCAGGGGCTGAGAGTTTGTGTATAATCTGGACATTATATTA
GGTTTACATGTGCCATTATTCACTTGTCTCTAGTGGGCGTCTTGATTGCATGCAATTAAGGTGCATGAATTTGTATAGAAGCTTTCTTTATTTCATTGCTTTTTATGAGGTAATTTATTTTACATCTCATATTTAACTGTAACAGACTTGAGATTAGTTCATTAGGTTGGCTAAATCCAGCTGCTAAATACAAGTAGCAG
AAAATTAAATGCTCAATGTACACTTTCCAATTTCATGAAATGCATTTGTTAAGCTGCTTCAATGTAACATTGCTGTCTTACATTCTGCACATATTTTGTGAAAGTGTGAATTTTTCAAATAGTAGCATACCGAATGCG




Intron 2 GTAGCAAAAA ... AATTTGGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A17.412502
A218.923007
A318.423157
A49.763714
A5201203
A625.932007
A717.862305
A830.771808
A9102703
A10252107



>TRINITY_DN109930_c0_g1_i5 from sample A3 / Example spliced isoform
AAGAGTTTTGCCAATGGATAAGATTTGCTTTGTTTAACCATCCGCGATAATAGCCCACATGGGACCAATGAGTTTTATAAAACGAGGTTGCGGATAACCGTGCAATGGGAGAATGTGGTGATGCCAAATTTAGAGCAAGAAATGATATTTAAAAAGTCGAGGAAGACTTTTTGTGCAGAAGATGGAGGAGCTCGTGGTTT
CCTCCGAATAAACAACGGCGGCCAAATTATTGAATGCTTGTCCCTATAATGGATATATGTAACGGGATTTTATATTCTTCTTTTGGCAATAAGAATCCATAAGGTGTCGAAAATACGAGAAAATTCAAAGTGAAGCGCTTTCATACGACTATTACACTGACAGACGGGGGCTTGAAAGCCGATCCACACATCCAAAACCA
CATCCGTCCATATTCTACGAGGGATACAGACAAGCCCACGTTCATGGTGCGAGGAATTCCAGCAATCCCTCTGCAGGACCGATTGCCAAGTTGAAGAAGCAGAAGAGGAAGGGTTAGTGTTAGTGTCCGAGAAGCGTAGGGAGTGGCGCCATGTTTCTCCGATGGAAAAGGGTAGGAGAACCGTCCGCGGCAGCCAATTG
TATATCCTGGACCTGGAAAACCAAAGGCAGATCTTCTCAAATCCCCAATAGCAATAGTGCAGCTGCAGGGCTTTTGCAGGATGGAGGAGGCGAAGAAGAGAGCAAATGGTGGGCTTCTTCGAAGGACAATTATTGTTTCAGCAGCTTCAACCATCCGCTGCCTTTTTCGCCGAGGTTCAGCAGTTGCGTCCATCTCGGCA
CAGTCGCAGAGAAATCTGCCCGCCCGAAGCGGAGAGAAGCCCTAGGGTTTCAAGAGCGCAGCAAATGGGAGGGCGGCCGCGACGATTTCCAGAATCGGCAGCTCAAAGCCGACGGGAATTGCCCTCGCTGCGGGAAACAGATGACGGTTTATTTCTCTGCCGCTCCGCATCTCAATATTTTGTCTGAAAAATCCACGCTT
TCCGGCCTGTTGGACAACGGCAAGGGCATCGATACGGTAAATCTCTGTCCCAGTTGCAAAACGGCGTATTATTTTCGGCCTCACAAATTGGCTCCATTACAGGGAAATTTCGTTGAAATAGCATTTAGTGGTAATACTAGTAATCGTAATAGTAGGAGGAGGAATGTGAAGGACGATGACAGTGAAAATTGCACTAGAAG
TAGAGGAGGGGATTTTGGCGATACAAATGATGGCGGCAATGTGCAGCTTTCTTTCTGGGAAACCTTGCGGTCGTATGGAGACTCTTACGGTGACCCTCCAGAGCATTGGCAGCCTCCCGGGAACGGACTTGCTATACCGCCTGCCGTTGCGCTTCAGTCGCCGCCCGGTCCTCCTTACCCGCCTAACACTAATCTGATCC
GTTCCCATCTGGGGAGCGGAGGGGGAGGTGGTGATAGCTCTGGCGGATCTGCGGGGGGAGGATTTGGTTCCAGAGATGGTTGGGGAGGGTCCACTTTGGGGAAGGATTTGCCGACTCCTCGGGAGATTTGCAAGGGGCTCGACAAATTTGTTGTTGGACAGGAGCGAGCAAAAAAGGTGCTGGCAGTAGCTGTGTACAAT
CACTACAAGCGGATTTTCCACGAGTCTTTGCAGAAAGGCGGTTGCAAGGGCTTTTCATCGGACGGGCTTGGTGTATCAGACACCAGTCTTCCAGGAGAAGAAACTGATGAGAGTGATATGGTGGAGCTGGAGAAAAGTAATGTTCTACTCTTGGGTCCTACTGGGTCAGGGAAGACACTGCTTGCAAAAACTCTGGCTAG
GTTTGTGAATGTGCCCTTTGTTATTGCGGATGCAACAACCTTAACACAGGCAGGATATGTAGGGGAGGATGTGGAGTCAATTTTGTATAAGCTACTCATGGTTGCCGAATTCAATGTTTCAGCAGCTCAACAAGGCATTGTGTATATCGACGAAGTTGATAAAATTACTAAGAAGGCTGAAAGCATCAATATTAGCAGGG
ATGTGTCTGGGGAGGGTGTTCAGCAGGCATTACTTAAAATGCTAGAAGGAACAGTTGTAAATGTTCCAGAAAAGGGAGCTCGCAAACATCCACGCGGTGATCATATTCAGATCGATACAAAGGATATTCTCTTTATATGTGGTGGGGCTTTCGTGGATCTAGAGAAAACAATTTCTGAGAGACGACAAGATTCTTCTATT
GGATTTGGTGCCCCTGTACGTGCTAACATGAGGGCAGGTGGCCTGACAAATGCTGCAGTGACATCGTCCTTGCTAGAGTCGGTTGAGAGTAGTGATCTCATCGCATATGGCTTAATACCAGAGTTCATTGGACGATTTCCTGTCCTTGTTAGCCTCTCAGCTTTGACAGAAGACCAACTTATCCAGGTGCTCACGGAGCC
TAGAAATGCACTAGGCAAGCAATACAAGAAAATGTTTGAAATGAACAATGTGAAGTTACATTTCACTGAAGGTGCCCTTAGGCGGATTGCACAAAGGGCAATGGTCAAGAGTACTGGTGCCCGTGGTTTACGCTCTATACTCGAGAACCTTTTGACAGATGCCATGTTTGAGATTCCAGATACAAAAACGGGGCAGGATA
AAATAGATGCTGTTGTCATTGATGAGGAAGTTTTAGGATCTCCAGATTCACAGGGATGTCGAGCCAAAATACTTCACAGCGAGGGTGCATTGGAACGTTATCTTGCAGAGCATAAACAAAAGGAATCTTTGATCGATACAAAGGATATTCTCTTTATATGTGGTGGGGCTTTCGTGGATCTAGAGAAAACAATTTCTGAG
AGACGACAAGATTCTTCTATTGGATTTGGTGCCCCTGTACGTGCTAACATGAG


>TRINITY_DN109930_c0_g1_i4 from sample A3 / Example unspliced isoform:
GGGCTTTTCATCGGACGGgtagcaaaaatcataccttcatttaaatcctatgcagaaaatttataatttttatatagacttggtttcgtttttttcctgcaaaagcttttgatcccaatcatttctttcacttaacaatgaacattgaactctcaatagattgcatttttctacttgttttgtcggggtagttggcttac
tgagatgctactattagttaagattaaacacttatttaaatttggcag
GCTTGGTGTATCAGACACCAGTCTTCCAGGAGAAGAAACTGATGAGAGTGATATGGTGGAGCTGGAGAAAAGTAATGTTCTACTCTTGGGTCCTACTGGGTCAGGGAAGACACTGCTTGCAAAAACTCTGGCTAGGTTTGTGAATGTGCCCT
TTGTTATTGCGGATGCAACAACCTTAACACAGGCAGGATATGTAGGGGAGGATGTGGAGTCAATTTTGTATAAGCTACTCATGGTTGCCGAATTCAATGTTTCAGCAGCTCAACAAGGCATTGTGTATATCGACGAAGTTGATAAAATTACTAAGAAGGCTGAAAGCATCAATATTAGCAGGGATGTGTCTGGGGAGGGT
GTTCAGCAGGCATTACTTAAAATGCTAGAAGGAACAGTTGTAAATGTTCCAGAAAAGGGAGCTCGCAAACATCCACGCGGTGATCATATTCAGATCGATACAAAGGATATTCTCTTTATATGTGGTGGGGCTTTCGTGGATCTAGAGAAAACAATTTCTGAGAGACGACAAGATTCTTCTATTGGATTTGGTGCCCCTGT
ACGTGCTAACATGAGGGCAGGTGGCCTGACAAATGCTGCAGTGACATCGTCCTTGCTAGAGTCGGTTGAGAGTAGTGATCTCATCGCATATGGCTTAATACCAGAGTTCATTGGACGATTTCCTGTCCTTGTTAGCCTCTCAGCTTTGACAGAAGACCAACTTATCCAGGTGCTCACGGAGCCTAGAAATGCACTAGGCA
AGCAATACAAGAAAATGTTTGAAATGAACAATGTGAAGTTACATTTCACTGAAGGTGCCCTTAGGCGGATTGCACAAAGGGCAATGGTCAAGAGTACTGGTGCCCGTGGTTTACGCTCTATACTCGAGAACCTTTTGACAGATGCCATGTTTGAGATTCCAGATACAAAAACGGGGCAGGATAAAATAGATGCTGTTGTC
ATTGATGAGGAAGTTTTAGGATCTCCAGATTCACAGGGATGTCGAGCCAAAATACTTCACAGCGAGGGTGCATTGGAACGTTATCTTGCAGAGCATAAACAAAAGGAATCTTTGGTTGTTACTGAAGGTTCTGATGAGGGTGAACCAGATGTAGATACTGACCTTCCTTCCAGGGCCGCTATGAGTATGTAATATTGTAG
CCTGACAAAATCCTTGTGTAGGAGGATGGTAAAAGGATGTACTCTATTTTGTACAGCAGGGGCTGAGAGTTTGTGTATAATCTGGACATTATATTAGGTTTACATGTGCCATTATTCACTTGTCTCTAGTGGGCGTCTTGATTGCATGCAATTAAGGTGCATGAATTTGTATAGAAGCTTTCTTTATTTCATTGCTTTTT
ATGAGGTAATTTATTTTACATCTCATATTTAACTGTAACAGACTTGAGATTAGTTCATTAGGTTGGCTAAATCCAGCTGCTAAATACAAGTAGCAGAAAATTAAATGCTCA




Intron 3 GTGCATGGCT ... TGCCATTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A122.731782
A224.321445
A331.9326.71114
A424.441738
A529.2819.3511
A625.93501322
A724.1433615
A818.6448517
A919.5939910
A1021.742769



>TRINITY_DN109930_c0_g1_i5 from sample A3 / Example spliced isoform
AAGAGTTTTGCCAATGGATAAGATTTGCTTTGTTTAACCATCCGCGATAATAGCCCACATGGGACCAATGAGTTTTATAAAACGAGGTTGCGGATAACCGTGCAATGGGAGAATGTGGTGATGCCAAATTTAGAGCAAGAAATGATATTTAAAAAGTCGAGGAAGACTTTTTGTGCAGAAGATGGAGGAGCTCGTGGTTT
CCTCCGAATAAACAACGGCGGCCAAATTATTGAATGCTTGTCCCTATAATGGATATATGTAACGGGATTTTATATTCTTCTTTTGGCAATAAGAATCCATAAGGTGTCGAAAATACGAGAAAATTCAAAGTGAAGCGCTTTCATACGACTATTACACTGACAGACGGGGGCTTGAAAGCCGATCCACACATCCAAAACCA
CATCCGTCCATATTCTACGAGGGATACAGACAAGCCCACGTTCATGGTGCGAGGAATTCCAGCAATCCCTCTGCAGGACCGATTGCCAAGTTGAAGAAGCAGAAGAGGAAGGGTTAGTGTTAGTGTCCGAGAAGCGTAGGGAGTGGCGCCATGTTTCTCCGATGGAAAAGGGTAGGAGAACCGTCCGCGGCAGCCAATTG
TATATCCTGGACCTGGAAAACCAAAGGCAGATCTTCTCAAATCCCCAATAGCAATAGTGCAGCTGCAGGGCTTTTGCAGGATGGAGGAGGCGAAGAAGAGAGCAAATGGTGGGCTTCTTCGAAGGACAATTATTGTTTCAGCAGCTTCAACCATCCGCTGCCTTTTTCGCCGAGGTTCAGCAGTTGCGTCCATCTCGGCA
CAGTCGCAGAGAAATCTGCCCGCCCGAAGCGGAGAGAAGCCCTAGGGTTTCAAGAGCGCAGCAAATGGGAGGGCGGCCGCGACGATTTCCAGAATCGGCAGCTCAAAGCCGACGGGAATTGCCCTCGCTGCGGGAAACAGATGACGGTTTATTTCTCTGCCGCTCCGCATCTCAATATTTTGTCTGAAAAATCCACGCTT
TCCGGCCTGTTGGACAACGGCAAGGGCATCGATACGGTAAATCTCTGTCCCAGTTGCAAAACGGCGTATTATTTTCGGCCTCACAAATTGGCTCCATTACAGGGAAATTTCGTTGAAATAGCATTTAGTGGTAATACTAGTAATCGTAATAGTAGGAGGAGGAATGTGAAGGACGATGACAGTGAAAATTGCACTAGAAG
TAGAGGAGGGGATTTTGGCGATACAAATGATGGCGGCAATGTGCAGCTTTCTTTCTGGGAAACCTTGCGGTCGTATGGAGACTCTTACGGTGACCCTCCAGAGCATTGGCAGCCTCCCGGGAACGGACTTGCTATACCGCCTGCCGTTGCGCTTCAGTCGCCGCCCGGTCCTCCTTACCCGCCTAACACTAATCTGATCC
GTTCCCATCTGGGGAGCGGAGGGGGAGGTGGTGATAGCTCTGGCGGATCTGCGGGGGGAGGATTTGGTTCCAGAGATGGTTGGGGAGGGTCCACTTTGGGGAAGGATTTGCCGACTCCTCGGGAGATTTGCAAGGGGCTCGACAAATTTGTTGTTGGACAGGAGCGAGCAAAAAAGGTGCTGGCAGTAGCTGTGTACAAT
CACTACAAGCGGATTTTCCACGAGTCTTTGCAGAAAGGCGGTTGCAAGGGCTTTTCATCGGACGGGCTTGGTGTATCAGACACCAGTCTTCCAGGAGAAGAAACTGATGAGAGTGATATGGTGGAGCTGGAGAAAAGTAATGTTCTACTCTTGGGTCCTACTGGGTCAGGGAAGACACTGCTTGCAAAAACTCTGGCTAG
GTTTGTGAATGTGCCCTTTGTTATTGCGGATGCAACAACCTTAACACAGGCAGGATATGTAGGGGAGGATGTGGAGTCAATTTTGTATAAGCTACTCATGGTTGCCGAATTCAATGTTTCAGCAGCTCAACAAGGCATTGTGTATATCGACGAAGTTGATAAAATTACTAAGAAGGCTGAAAGCATCAATATTAGCAGGG
ATGTGTCTGGGGAGGGTGTTCAGCAGGCATTACTTAAAATGCTAGAAGGAACAGTTGTAAATGTTCCAGAAAAGGGAGCTCGCAAACATCCACGCGGTGATCATATTCAGATCGATACAAAGGATATTCTCTTTATATGTGGTGGGGCTTTCGTGGATCTAGAGAAAACAATTTCTGAGAGACGACAAGATTCTTCTATT
GGATTTGGTGCCCCTGTACGTGCTAACATGAGGGCAGGTGGCCTGACAAATGCTGCAGTGACATCGTCCTTGCTAGAGTCGGTTGAGAGTAGTGATCTCATCGCATATGGCTTAATACCAGAGTTCATTGGACGATTTCCTGTCCTTGTTAGCCTCTCAGCTTTGACAGAAGACCAACTTATCCAGGTGCTCACGGAGCC
TAGAAATGCACTAGGCAAGCAATACAAGAAAATGTTTGAAATGAACAATGTGAAGTTACATTTCACTGAAGGTGCCCTTAGGCGGATTGCACAAAGGGCAATGGTCAAGAGTACTGGTGCCCGTGGTTTACGCTCTATACTCGAGAACCTTTTGACAGATGCCATGTTTGAGATTCCAGATACAAAAACGGGGCAGGATA
AAATAGATGCTGTTGTCATTGATGAGGAAGTTTTAGGATCTCCAGATTCACAGGGATGTCGAGCCAAAATACTTCACAGCGAGGGTGCATTGGAACGTTATCTTGCAGAGCATAAACAAAAGGAATCTTTGATCGATACAAAGGATATTCTCTTTATATGTGGTGGGGCTTTCGTGGATCTAGAGAAAACAATTTCTGAG
AGACGACAAGATTCTTCTATTGGATTTGGTGCCCCTGTACGTGCTAACATGAG


>TRINITY_DN109930_c0_g1_i2 from sample A3 / Example unspliced isoform:
AAGAGTTTTGCCAATGGATAAGATTTGCTTTGTTTAACCATCCGCGATAATAGCCCACATGGGACCAATGAGTTTTATAAAACGAGGTTGCGGATAACCGTGCAATGGGAGAATGTGGTGATGCCAAATTTAGAGCAAGAAATGATATTTAAAAAGTCGAGGAAGACTTTTTGTGCAGAAGATGGAGGAGCTCGTGGTTT
CCTCCGAATAAACAACGGCGGCCAAATTATTGAATGCTTGTCCCTATAATGGATATATGTAACGGGATTTTATATTCTTCTTTTGGCAATAAGAATCCATAAGGTGTCGAAAATACGAGAAAATTCAAAGTGAAGCGCTTTCATACGACTATTACACTGACAGACGGGGGCTTGAAAGCCGATCCACACATCCAAAACCA
CATCCGTCCATATTCTACGAGGGATACAGACAAGCCCACGTTCATGGTGCGAGGAATTCCAGCAATCCCTCTGCAGGACCGATTGCCAAGTTGAAGAAGCAGAAGAGGAAGGGTTAGTGTTAGTGTCCGAGAAGCGTAGGGAGTGGCGCCATGTTTCTCCGATGGAAAAGGGTAGGAGAACCGTCCGCGGCAGCCAATTG
TATATCCTGGACCTGGAAAACCAAAGGCAGATCTTCTCAAATCCCCAATAGCAATAGTGCAGCTGCAGGGCTTTTGCAGGATGGAGGAGGCGAAGAAGAGAGCAAATGGTGGGCTTCTTCGAAGGACAATTATTGTTTCAGCAGCTTCAACCATCCGCTGCCTTTTTCGCCGAGGTTCAGCAGTTGCGTCCATCTCGGCA
CAGTCGCAGAGAAATCTGCCCGCCCGAAGCGGAGAGAAGCCCTAGGGTTTCAAGAGCGCAGCAAATGGGAGGGCGGCCGCGACGATTTCCAGAATCGGCAGCTCAAAGCCGACGGGAATTGCCCTCGCTGCGGGAAACAGATGACGGTTTATTTCTCTGCCGCTCCGCATCTCAATATTTTGTCTGAAAAATCCACGCTT
TCCGGCCTGTTGGACAACGGCAAGGGCATCGATACGGTAAATCTCTGTCCCAGTTGCAAAACGGCGTATTATTTTCGGCCTCACAAATTGGCTCCATTACAGGGAAATTTCGTTGAAATAGCATTTAGTGGTAATACTAGTAATCGTAATAGTAGGAGGAGGAATGTGAAGGACGATGACAGTGAAAATTGCACTAGAAG
TAGAGGAGGGGATTTTGGCGATACAAATGATGGCGGCAATGTGCAGCTTTCTTTCTGGGAAACCTTGCGGTCGTATGGAGACTCTTACGGTGACCCTCCAGAGCATTGGCAGCCTCCCGGGAACGGACTTGCTATACCGCCTGCCGTTGCGCTTCAGTCGCCGCCCGGTCCTCCTTACCCGCCTAACACTAATCTGATCC
GTTCCCATCTGGGGAGCGGAGGGGGAGGTGGTGATAGCTCTGGCGGATCTGCGGGGGGAGGATTTGGTTCCAGAGATGGTTGGGGAGGGTCCACTTTGGGGAAGGATTTGCCGACTCCTCGGGAGATTTGCAAGGGGCTCGACAAATTTGTTGTTGGACAGGAGCGAGCAAAAAAGGTGCTGGCAGTAGCTGTGTACAAT
CACTACAAGCGGATTTTCCACGAGTCTTTGCAGAAAGGCGGTTGCAAGGGCTTTTCATCGGACGGGCTTGGTGTATCAGACACCAGTCTTCCAGGAGAAGAAACTGATGAGAGTGATATGGTGGAGCTGGAGAAAAGTAATGTTCTACTCTTGGGTCCTACTGGGTCAGGGAAGACACTGCTTGCAAAAACTCTGGCTAG
GTTTGTGAATGTGCCCTTTGTTATTGCGGATGCAACAACCTTAACACAGGCAGGATATGTAGGGGAGGATGTGGAGTCAATTTTGTATAAGCTACTCATGGTTGCCGAATTCAATGTTTCAGCAGCTCAACAAGGCATTGTGTATATCGACGAAGTTGATAAAATTACTAAGAAGGCTGAAAGCATCAATATTAGCAGGG
ATGTGTCTGGGGAGGGTGTTCAGCAGGCATTACTTAAAATGCTAGAAGGAACAGTTGTAAATGTTCCAGAAAAGGGAGCTCGCAAACATCCACGCGGTGATCATATTCAGATCGATACAAAGGATATTCTCTTTATATGTGGTGGGGCTTTCGTGGATCTAGAGAAAACAATTTCTGAGAGACGACAAGATTCTTCTATT
GGATTTGGTGCCCCTGTACGTGCTAACATGAGGGCAGGTGGCCTGACAAATGCTGCAGTGACATCGTCCTTGCTAGAGTCGGTTGAGAGTAGTGATCTCATCGCATATGGCTTAATACCAGAGTTCATTGGACGATTTCCTGTCCTTGTTAGCCTCTCAGCTTTGACAGAAGACCAACTTATCCAGGTGCTCACGGAGCC
TAGAAATGCACTAGGCAAGCAATACAAGAAAATGTTTGAAATGAACAATGTGAAGTTACATTTCACTGAAGGTGCCCTTAGGCGGATTGCACAAAGGGCAATGGTCAAGAGTACTGGTGCCCGTGGTTTACGCTCTATACTCGAGAACCTTTTGACAGATGCCATGTTTGAGgtgcatggctgacatgtttccttgtcat
ttttatgtgatgattattataggttctttgtgagttcttttggtgtggtttttaattaatgtaattttgattactcttgatttgtttttagaatttctttaaccatggctgctcaatagagctgtttctcagcagcattgttaacattggttttgtatttgtattctgcactattatggtctaaacacttctgacatgcc
attcag
ATTCCAGATACAAAAACGGGGCAGGATAAAATAGATGCTGTTGTCATTGATGAGGAAGTTTTAGGATCTCCAGATTCACAGGGATGTCGAGCCAAAATACTTCACAGCGAGGGTGCATTGGAACGTTATCTTGCAGAGCATAAACAAAAGGAATCTTTGGTTGTTACTGAAGGTTCTGATGAGGGTGAACCAGA
TGTAGATACTGACCTTCCTTCCAGGGCCGCTATGAGTATGTAATATTGTAGCCTGACAAAATCCTTGTGTAGGAGGATGGTAAAAGGATGTACTCTATTTTGTACAGCAGGGGCTGAGAGTTTGTGTATAATCTGGACATTATATTAGGTTTACATGTGCCATTATTCACTTGTCTCTAGTGGGCGTCTTGATTGCATGC
AATTAAGGTGCATGAATTTGTATAGAAGCTTTCTTTATTTCATTGCTTTTTATGAGGTAATTTATTTTACATCTCATATTTAACTGTAACAGACTTGAGATTAGTTCATTAGGTTGGCTAAATCCAGCTGCTAAATACAAGTAGCAGAAAATTAAATGCTCA




Intron 4 GTGTCCAATT ... GACATATCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A116.522355.8
A230.39145.96.6
A318.117.84.64.3
A426168.85.9
A59.2351.80.6
A67.06371.83.3
A716.7323.87.8
A86.93325.32.8
A99.2373.54.6
A104.39221.81.1



>TRINITY_DN114797_c0_g1_i5 from sample A1 / Example spliced isoform
GTGGTGATGCCAAATTTAGAGCAAGAAATGATATTTAAAAAGTCGAGGAAGACTTTTTGTGCAGAAGATGGAGGAGCTCGTGGTTTCCTCCGAATAAACAACGGCGGCCAAATTATTGAATGCTTGTCCCTATAATGGATATATGTAACGGGATTTTATATTCTTCTTTTGGCAATAAGAATCCATAAGGTGTCGAAAAT
ACGAGAAAATTCAAAGTGAAGCGCTTTCATACGACTATTACACTGACAGACGGGGGCTTGAAAGCCGATCCACACATCCAAAACCACATCCGTCCATATTCTACGAGGGATACAGACAAGCCCACGTTCATGGTGCGAGGAATTCCAGCAATCCCTCTGCAGGACCGATTGCCAAGTTGAAGAAGCAGAAGAGGAAGGGT
TAGTGTTAGTGTCCGAGAAGCGTAGGGAGTGGCGCCATGTTTCTCCGATGGAAAAGGGTAGGAGAACCGTCCGCGGCAGCCAATTGTATATCCTGGACCTGGAAAACCAAAGGCAGATCTTCTCAAATCCCCAATAGCAATAGTGCAGCTGCAGGGCTTTTGCAGGATGGAGGAGGCGAAGAAGAGAGCAAATGGTGGGC
TTCTTCGAAGGACAATTATTGTTTCAGCAGCTTCAACCATCCGCTGCCTTTTTCGCCGAGGTTCAGCAGTTGCGTCCATCTCGGCACAGTCGCAGAGAAATCTGCCCGCCCGAAGCGGAGAGAAGCCCTAGGGTTTCAAGAGCGCAGCAAATGGGAGGGCGGCCGCGACGATTTCCAGAATCGGCAGCTCAAAGCCGACG
GGAATTGCCCTCGCTGCGGGAAACAGATGACGGTTTATTTCTCTGCCGCTCCGCATCTCAATATTTTGTCTGAAAAATCCACGCTTTCCGGCCTGTTGGACAACGGCAAGGGCATCGATACGGTAAATCTCTGTCCCAGTTGCAAAACGGCGTATTATTTTCGGCCTCACAAATTGGCTCCATTACAGGGAAATTTCGTT
GAAATAGCATTTAGTGGTAATACTAGTAATCGTAATAGTAGGAGGAGGAATGTGAAGGACGATGACAGTGAAAATTGCACTAGAAGTAGAGGAGGGGATTTTGGCGATACAAATGATGGCGGCAATGTGCAGCTTTCTTTCTGGGAAACCTTGCGGTCGTATGGAGACTCTTACGGTGACCCTCCAGAGCATTGGCAGCC
TCCCGGGAACGGACTTGCTATACCGCCTGCCGTTGCGCTTCAGTCGCCGCCCGGTCCTCCTTACCCGCCTAACACTAATCTGATCCGTTCCCATCTGGGGAGCGGAGGGGGAGGTGGTGATAGCTCTGGCGGATCTGCGGGGGGAGGATTTGGTTCCAGAGATGGTTGGGGAGGGTCCAATTTGGGGAAGGATTTGCCGA
CTCCTCGGGAGATTTGCAAGGGGCTCGACAAATTTGTTGTTGGACAGGAGCGAGCAAAAAAGGTGCTGGCAGTAGCTGTGTACAATCACTACAAGCGGATTTTCCACGAGTCTTTGCAGAAAGGCGGTTGCAAGGGCTTTTCATCGGACGGGCTTGGTGTATCAGACACCAGTCTTCCAGGAGAAGAAACTGATGAGAGT
GATATGGTGGAGCTGGAGAAAAGTAATGTTCTACTCTTGGGTCCTACTGGGTCAGGGAAGACACTGCTTGCAAAAACTCTGGCTAGGTTTGTGAATGTGCCCTTTGTTATTGCGGATGCAACAACCTTAACACAGGCAGGATATGTAGGGGAGGATGTGGAGTCAATTTTGTATAAGCTACTCATGGTTGCCGAATTCAA
TGTTTCAGCAGCTCAACAAGGCATTGTGTATATCGACGAAGTTGATAAAATTACTAAGAAGGCTGAAAGCATCAATATTAGCAGGGATGTGTCTGGGGAGGGTGTTCAGCAGGCATTACTTAAAATGCTAGAAGGAACAGTTGTAAATGTTCCAGAAAAGGGAGCTCGCAAACATCCACGCGGTGATCATATTCAGATCG
ATACAAAGGATATTCTCTTTATATGTGGTGGGGCTTTCGTGGATCTAGAGAAAACAATTTCTGAGAGACGACAAGATTCTTCTATTGGATTTGGCGCCCCTGTACGTGCTAACATGAGGGCAGGTGGCCTGACAAATGCTGCAGTGACATCGTCCTTGCTAGAGTCGGTTGAGAGTAGTGATCTCATCGCATATGGCTTA
ATACCAGAGTTCATTGGACGATTTCCTGTCCTTGTTAGCCTCTCAGCTTTGACAGAAGACCAACTTATCCAGGTGCTCACGGAGCCTAGAAATGCACTAGGCAAGCAATACAAGAAAATGTTTGAAATGAACAATGTGAAGTTACATTTCACTGAAGGTGCCCTTAGGCGGATTGCACAAAGGGCAATGGTCAAGAGTAC
TGGTGCCCGTGGTTTACGCTCTATACTCGAGAACCTTTTGACAGATGCCATGTTTGAGATTCCAGATACAAAAACGGGGCAGGATAAAATAGATGCTGTTGTCATTGATGAGGAAGTTTTAGGATCTCCAGATTCACAGGGATGTCGAGCCAAAATACTTCACAGCGAGGGTGCATTGGAACGTTATCTTGCAGAGCATA
AACAAAAGGAATCTTTGGTTGTTACTGAAGGTTCTGATGAGGGTGAACCAGATGTAGATACTGACCTTCCTTCCAGGGCCGCTATGAGTATGTAATATTGTAGCCTGACAAAATCCTTGTGTAGGAGGATGGTAAAAGGATGTACTCTATTTTGTACAGCAGGGGCTGAGAGTTTGTGTATAATCTGGACATTATATTAG
GTTTACATGTGCCATTATTCACTTGTCTCTAGTGGGCGTCTTGATTGCATGCAATTAAGGTGCATGAATTTGTATAGAAGCTTTCTTTATTTCATTGCTTTTTATGAGGTAATTTATTTTACATCTCATATTTAACTGTAACAGACTTGAGATTAGTTCATTAGGTTGGCTAAATCCAGCTGCTAAATACAAGTAGCAGA
AAATTAAATGCTCAATGTACACTTTCCAATTTCATGAAAGATGCATTTGTTAAGCTGCTTCAATGTAACATTGCTGTCT


>TRINITY_DN114797_c0_g1_i4 from sample A1 / Example unspliced isoform:
GTGGTGATGCCAAATTTAGAGCAAGAAATGATATTTAAAAAGTCGAGGAAGACTTTTTGTGCAGAAGATGGAGGAGCTCGTGGTTTCCTCCGAATAAACAACGGCGGCCAAATTATTGAATGCTTGTCCCTATAATGGATATATGTAACGGGATTTTATATTCTTCTTTTGGCAATAAGAATCCATAAGGTGTCGAAAAT
ACGAGAAAATTCAAAGTGAAGCGCTTTCATACGACTATTACACTGACAGACGGGGGCTTGAAAGCCGATCCACACATCCAAAACCACATCCGTCCATATTCTACGAGGGATACAGACAAGCCCACGTTCATGGTGCGAGGAATTCCAGCAATCCCTCTGCAGGACCGATTGCCAAGTTGAAGAAGCAGAAGAGGAAGGGT
TAGTGTTAGTGTCCGAGAAGCGTAGGGAGTGGCGCCATGTTTCTCCGATGGAAAAGGGTAGGAGAACCGTCCGCGGCAGCCAATTGTATATCCTGGACCTGGAAAACCAAAGGCAGATCTTCTCAAATCCCCAATAGCAATAGTGCAGCTGCAGGGCTTTTGCAGGATGGAGGAGGCGAAGAAGAGAGCAAATGGTGGGC
TTCTTCGAAGGACAATTATTGTTTCAGCAGCTTCAACCATCCGCTGCCTTTTTCGCCGAGGTTCAGCAGTTGCGTCCATCTCGGCACAGTCGCAGAGAAATCTGCCCGCCCGAAGCGGAGAGAAGCCCTAGGGTTTCAAGAGCGCAGCAAATGGGAGGGCGGCCGCGACGATTTCCAGAATCGGCAGCTCAAAGCCGACG
GGAATTGCCCTCGCTGCGGGAAACAGATGACGGTTTATTTCTCTGCCGCTCCGCATCTCAATATTTTGTCTGAAAAATCCACGCTTTCCGGCCTGTTGGACAACGGCAAGGGCATCGATACGGTAAATCTCTGTCCCAGTTGCAAAACGGCGTATTATTTTCGGCCTCACAAATTGGCTCCATTACAGGGAAATTTCGTT
GAAATAGCATTTAGTGGTAATACTAGTAATCGTAATAGTAGGAGGAGGAATGTGAAGGACGATGACAGTGAAAATTGCACTAGAAGTAGAGGAGGGGATTTTGGCGATACAAATGATGGCGGCAATGTGCAGCTTTCTTTCTGGGAAACCTTGCGGTCGTATGGAGACTCTTACGGTGACCCTCCAGAGCATTGGCAGCC
TCCCGGGAACGGACTTGCTATACCGCCTGCCGTTGCGCTTCAGTCGCCGCCCGGTCCTCCTTACCCGCCTAACACTAATCTGATCCGTTCCCATCTGGGGAGCGGAGGGGGAGGTGGTGATAGCTCTGGCGGATCTGCGGGGGGAGGATTTGGTTCCAGAGATGGTTGGGGAGGGTCCAATTTGGGGAAGGATTTGCCGA
CTCCTCGGGAGATTTGCAAGGGGCTCGACAAATTTGTTGTTGGACAGGAGCGAGCAAAAAAGGTGCTGGCAGTAGCTGTGTACAATCACTACAAGCGGATTTTCCACGAGTCTTTGCAGAAAGGCGGTTGCAAGGGCTTTTCATCGGACGGGCTTGGTGTATCAGACACCAGTCTTCCAGGAGAAGAAACTGATGAGAGT
GATATGGTGGAGCTGGAGAAAAGTAATGTTCTACTCTTGGGTCCTACTGGGTCAGGGAAGACACTGCTTGCAAAAACTCTGGCTAGGTTTGTGAATGTGCCCTTTGTTATTGCGGATGCAACAACCTTAACACAGGCAGGATATGTAGGGGAGGATGTGGAGTCAATTTTGTATAAGCTACTCATGGTTGCCGAATTCAA
TGTTTCAGCAGCTCAACAAGGCATTGTGTATATCGACGAAGTTGATAAAATTACTAAGAAGGCTGAAAGCATCAATATTAGCAGGGATGTGTCTGGGGAGGGTGTTCAGCAGGCATTACTTAAAATGCTAGAAGGAACAGTTGTAAATGTTCCAGAAAAGGGAGCTCGCAAACATCCACGCGGTGATCATATTCAGATCG
ATACAAAGGATATTCTCTTTATATGTGGTGGGGCTTTCGTGGATCTAGAGAAAACAATTTCTGAGAGgtgtccaatttctgcttttatccttttactataaaccaatatctcactttaggtgtcatgctaccattttcttatattaactagtggctgacatatcagACGACAAGATTCTTCTATTGGATTTGGCGCCCCT
GTACGTGCTAACATGAGGGCAGGTGGCCTGACAAATGCTGCAGTGACATCGTCCTTGCTAGAGTCGGTTGAGAGTAGTGATCTCATCGCATATGGCTTAATACCAGAGTTCATTGGACGATTTCCTGTCCTTGTTAGCCTCTCAGCTTTGACAGAAGACCAACTTATCCAGGTGCTCACGGAGCCTAGAAATGCACTAGG
CAAGCAATACAAGAAAATGTTTGAAATG