sp|Q9LSW2|ARP9_ARATH ----> Actin-related protein 9
Intron 1 GCCAAGCGTA ... ATTCCACTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.92 | 161.8 | 14.7 | 64 |
| A2 | 25.92 | 145.3 | 2.7 | 42 |
| A3 | 29.91 | 189.3 | 11.3 | 71.7 |
| A4 | 31.26 | 184.4 | 7.3 | 70 |
| A5 | 30.41 | 65.3 | 5 | 25 |
| A6 | 23.66 | 166.6 | 11.3 | 43 |
| A7 | 29.28 | 312.7 | 12.7 | 112 |
| A8 | 27.7 | 178.1 | 14.3 | 61 |
| A9 | 33.41 | 205.4 | 6.3 | 88 |
| A10 | 31.88 | 223.2 | 7.7 | 85 |
>TRINITY_DN120084_c8_g1_i8 from sample A1 / Example spliced isoformTGGACTTAGACTTTTATAAATAAAGGTATAGTTACTTCTGTGTGAGAAAAGAAAAAAAATAGCGCATATCATATGTTATAGTTTCGAATCCCGATCTCGCTCCTCCTAATGTAAAGTACATGTATTTAGCCGTTAAGCATTGGCGCCACTTCCAGGGGTTATGATTTCGTTGCCGATTTAAGAACTCTCTCTATCAGCCT
CTCTGCAAAACGTCCACTGGAAACTTCGCTCTTCCAGCAAGATGGATTACCTGAAAACGGTGGTACCTTCTCAACTCATCGCCGAGAGAGGCTCCAATATGGTAGTCATCAATCCAGGTTCCTCGAGTGTTAAAATTGGTCTCGCATCATGGCAAACCCCCGTGGTAATTCCCCATTGCATCGCACATTATATGAGAGGG
CCAATGGACGAGCAAGCCCAAATTGCCAAGAGAAATCGCGAGCAGGTTTTTACATCTCCTGTATCATCTGCCCAGCAATCGGAGCGCGAAGAAGCCTATCATGTGATTGCTTCACACTTGAAGCTACAACCTGCAAATCATGAACGGGGGAAAGAATCCTGGTTTCGTAAGATGGATCACTCTGATGGTTACAATTCTCA
AACAAAGCTGCATGAAGAGACAATATATCCATGGACAGATGTCAGAGAAGAGAAAAATTCAAACTCTCCTGTTATGGGAGTAGATGCAGATGACCAAGCTGATGTAAATATGAATGAAGAAAAACCTGAAGGCATAGATGAAGTCAATGGATCTGGAGATGATGGAATAAATGATTGTACCGACACTTTCAGAAATTTTA
TATGTGGTGATGAGGCTCTGAGAATTGCTCCTGATCAACCATATTTCTTGCGGCAGCCGATTCGTAGAGGCCATCTCAATGTTTCTCTGTTTTATTCAGTGCAGCAGATTTCTGAAGATCTTTACCGCATCTGGGATTGGATTTTAAGGGAAAAGTTGCGTATATCTCCAAAGGATCGACATATGTTTTCTGCAGTTTTA
GTTGTTTCTGAAACATTTGACAATCGTGAAATGAAGGAGATGTTGTCCGTGGTGTTGCGGGACTTGCAGTTCAACTCTGCAGTAATCCACCAGGAAAGTCTTTCTGCAACATTTGGAAATGGAGTGTCGACTTCATGTGTTGTGAATATTGGTGCTCAAGTTGCATCTGTTTTGTGTATCGAGGATGGAGTTGCTGTGCC
AGCAACAGGTGTGACACTCCCATTTGGCGGGGAGGATATATCAAGATGTCTCCTTTGGGTTCAGCAGCATCGTCAAACTTGGCCACCAACTGATACTGACCCTATGGCAAAGCCTATAGATCTTCTTATGCTCAATAAGTTGAAGGAGACCCAGTGCAAGATTAAAGATGGAGAGTTGAATGCTTTTGCAGATGTCCATT
GCTATAAGGCAAACCTTCCATCTGAAGTTTACAGAGTTCATCTTTCTGCTCTAAATGTAAGTGCACCAAAAATAATCAGTTGTGGGCTTTTATCAGTTTTTCTGCCTTTTTTCTGAGTAACTTTTCATTAAAATCAGGGCAGCATGATAGTTTTACAAGAGGTTTTACTTTTTTCAATCTTAATACAAGCCTTTAAACAT
CAG
>TRINITY_DN120084_c8_g1_i2 from sample A1 / Example unspliced isoform:TGGACTTAGACTTTTATAAATAAAGGTATAGTTACTTCTGTGTGAGAAAAGAAAAAAAATAGCGCATATCATATGTTATAGTTTCGAATCCCGATCTCGCTCCTCCTAATGTAAAGTACATGTATTTAGCCGTTAAGCATTGGCGCCACTTCCAGGGGTTATGATTTCGTTGCCGATTTAAGAACTCTCTCTATCAGCCT
CTCTGCAAAACGTCCACTGGAAACTTCGCTCTTCCAGCAAGATGGATTACCTGAAAACGGTGGTACCTTCTCAACTCATCGCCGAGAGAGGCTCCAATATGGTAGTCATCAATCCAGGTTCCTCGAGTGTTAAAATTGGTCTCGCATCATGGCAAACCCCCGTGGTAATTCCCCATTGCATCGCACATTATATGAGAGGG
CCAATGGACGAGCAAGCCCAAATTGCCAAGAGAAATCGCGAGCAGGTTTTTACATCTCCTGTATCATCTGCCCAGCAATCGGAGCGCGAAGAAGCCTATCATGTGATTGCTTCACACTTGAAGCTACAACCTGCAAATCATGAACGGGGGAAAGAATCCTGGTTTCGTAAGATGGATCACTCTGATGGTTACAATTCTCA
AACAAAGCTGCATGAAGAGACAATATATCCATGGACAGATGTCAGAGAAGAGAAAAATTCAAACTCTCCTGTTATGGGAGTAGATGCAGATGACCAAGCTGATGTAAATATGAATGAAGAAAAACCTGAAGGCATAGATGAAGTCAATGGATCTGGAGATGATGGAATAAATGATTGTACCGACACTTTCAGAAATTTTA
TATGTGGTGATGAGGCTCTGAGAATTGCTCCTGATCAACCATATTTCTTGCGGCAGCCGATTCGTAGAGGCCATCTCAATGTTTCTCTGTTTTATTCAGTGCAGCAGATTTCTGAAGATCTTTACCGCATCTGGGATTGGATTTTAAGGGAAAAGTTGCGTATATCTCCAAAGGATCGACATATGTTTTCTGCAGTTTTA
GTTGTTTCTGAAACATTTGACAATCGTGAAATGAAGGAGATGTTGTCCGTGGTGTTGCGGGACTTGCAGTTCAACTCTGCAGTAATCCACCAGGAAAGTCTTTCTGCAACATTTGGAAATGGAGTGTCGACTTCATGTGTTGTGAATATTGGTGCTCAAGTTGCATCTGTTTTGTGTATCGAGGATGGAGTTGCTGTGCC
AGCAACAGGTGTGACACTCCCATTTGGCGGGGAGgccaagcgtatcgctcgactggtcgactagccaaaagtctctcagagcagatgcggcaggtcacgggatccattcccgttgagtccgcatgggtcaccggctactcttgtggtcgatggttaatccgcacactatctggtccccccaggaagcgcacgggattccg
ctagttgtttcctctgaaaaaatacttgattccactagGATATATCAAGATGTCTCCTTTGGGTTCAGCAGCATCGTCAAACTTGGCCACCAACTGATACTGACCCTATGGCAAAGCCTATAGATCTTCTTATGCTCAATAAGTTGAAGGAGACCCAGTGCAAGATTAAAGATGGAGAGTTGAATGCTTTTGCAGATGTC
CATTGCTATAAGGCAAACCTTCCATCTGAAGTTTACAGAGTTCATCTTTCTGCTCTAAATGTTCCACCCATGGGCCTATTTTATCCTTCTATTTTAATGCCAGAGGAGTACCCGCCTCCTCCCCGTCCTTGGTTTCACGACTATGAGGATATGTTGGAGGACAGTTCACACACAGAGTTTGTCAAAAGGTCAGATGGACC
AGACAATTTCTTTTCAGGTTATAATTCTGGATTGGCTATGCCAGATTCAAGTGAGTCCTATCCACAGAAGTTCAGAAATGAAGACAATCTAGTTGGTCTTGCTCAGGCTATTACAAATAGTATTCTTTCCACAGGGCGTTTAGATGTTCAAAAGAAATTGTTCACTAGCATACAGCTAGTTGGTGGAGTTGCTTTGACAA
AAGGTCTAGTTGGTGCAGTGGAAGAAAGAGTGTTGCATGCTATTCCAGCAAATGTAGATATTGACACCGTGGAGGTGTTGCAGCAGAGGACAGACCCAGTCATTGTTTCTTGGAAGGGCGGCGCCATACTTGGTATTCTAGATTACTTCAGTCGAGATCAATGGATTCATCGGGAAGATTGGGTGCATGGTGGAACTAAG
ATAGGGAGTGGTCGAAAGTACAGAGATTCTCACTTGATTCAAACTCAGGCTTTCTGGTACATTAATTCTTAAATGTGAACAGTCATTGCAAGTTATACAAAGCTGCAGCACATGATATTGCGGGAGCCCAGAAAATTGTTCTTATTCATTTGAGAATTACCCGACTTTTTCCTTTATAGATCCATTTGAATGCTTTGGAC
TCTTGTAAAAATGATATGTTGATGAGCAAATTTGGCTCTTCAACCTGTTATTTCAAGATGTTAAAAAATCAGCCCTGCTTGTTAGTCTGAGTGGTGCAATGCAACCCTTTTTTTTTCAATTTTTAACTTCAATCAGATATTTCAAGTGTAAATAGCAGCAAGACTGTTGGTTGTTATGTTTCAGACTACATTTGACATTG
AGTTGAACACGTAAACTTCATTTCAATACGGCTAAACTATTTCTGATTTTTTATTTTGTTTGTACATGTCTGAGTCGTTACTCTACCATCTTGCCAATATTTTTTTGGCATTTTGAATTGTTCGTGGAAATAGAAACTGTAATAAAATATTAGATTTTGGCATTACGAC
Intron 2 GTAATACCTT ... TTGCTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.24 | 44 | 41 | 7 |
| A2 | 48.45 | 50 | 47 | 1 |
| A3 | 47.73 | 46 | 42 | 1 |
| A4 | 45.71 | 38 | 32 | 1 |
| A5 | 44.44 | 15 | 12 | 0 |
| A6 | 46.15 | 42 | 36 | 2 |
| A7 | 46.05 | 41 | 35 | 0 |
| A8 | 50 | 17 | 17 | 0 |
| A9 | 47.67 | 45 | 41 | 0 |
| A10 | 45.98 | 47 | 40 | 0 |
>TRINITY_DN120084_c8_g1_i1 from sample A1 / Example spliced isoformTGGACTTAGACTTTTATAAATAAAGGTATAGTTACTTCTGTGTGAGAAAAGAAAAAAAATAGCGCATATCATATGTTATAGTTTCGAATCCCGATCTCGCTCCTCCTAATGTAAAGTACATGTATTTAGCCGTTAAGCATTGGCGCCACTTCCAGGGGTTATGATTTCGTTGCCGATTTAAGAACTCTCTCTATCAGCCT
CTCTGCAAAACGTCCACTGGAAACTTCGCTCTTCCAGCAAGATGGATTACCTGAAAACGGTGGTACCTTCTCAACTCATCGCCGAGAGAGGCTCCAATATGGTAGTCATCAATCCAGGTTCCTCGAGTGTTAAAATTGGTCTCGCATCATGGCAAACCCCCGTGGTAATTCCCCATTGCATCGCACATTATATGAGAGGG
CCAATGGACGAGCAAGCCCAAATTGCCAAGAGAAATCGCGAGCAGGTTTTTACATCTCCTGTATCATCTGCCCAGCAATCGGAGCGCGAAGAAGCCTATCATGTGATTGCTTCACACTTGAAGCTACAACCTGCAAATCATGAACGGGGGAAAGAATCCTGGTTTCGTAAGATGGATCACTCTGATGGTTACAATTCTCA
AACAAAGCTGCATGAAGAGACAATATATCCATGGACAGATGTCAGAGAAGAGAAAAATTCAAACTCTCCTGTTATGGGAGTAGATGCAGATGACCAAGGAACAAAGTAATGGATTATCATTGGAAAGTAGGCATATATGGACCCAATGCTGACAGGAACAAAGTGAACTGATGTAAATATGAATGAAGAAAAACCTGAAG
GCATAGATGAAGTCAATGGATCTGGAGATGATGGAATAAATGATTGTACCGACACTTTCAGAAATTTTATATGTGGTGATGAGGCTCTGAGAATTGCTCCTGATCAACCATATTTCTTGCGGCAGCCGATTCGTAGAGGCCATCTCAATGTTTCTCTGTTTTATTCAGTGCAGCAGATTTCTGAAGATCTTTACCGCATC
TGGGATTGGATTTTAAGGGAAAAGTTGCGTATATCTCCAAAGGATCGACATATGTTTTCTGCAGTTTTAGTTGTTTCTGAAACATTTGACAATCGTGAAATGAAGGAGATGTTGTCCGTGGTGTTGCGGGACTTGCAGTTCAACTCTGCAGTAATCCACCAGGAAAGTCTTTCTGCAACATTTGGAAATGGAGTGTCGAC
TTCATGTGTTGTGAATATTGGTGCTCAAGTTGCATCTGTTTTGTGTATCGAGGATGGAGTTGCTGTGCCAGCAACAGGTGTGACACTCCCATTTGGCGGGGAGGATATATCAAGATGTCTCCTTTGGGTTCAGCAGCATCGTCAAACTTGGCCACCAACTGATACTGACCCTATGGCAAAGCCTATAGATCTTCTTATGC
TCAATAAGTTGAAGGAGACCCAGTGCAAGATTAAAGATGGAGAGTTGAATGCTTTTGCAGATGTCCATTGCTATAAGGCAAACCTTCCATCTGAAGTTTACAGAGTTCATCTTTCTGCTCTAAATGTTCCACCCATGGGCCTATTTTATCCTTCTATTTTAATGCCAGAGGAGTACCCGCCTCCTCCCCGTCCTTGGTTT
CACGACTATGAGGATATGTTGGAGGACAGTTCACACACAGAGTTTGTCAAAAGGTCAGATGGACCAGACAATTTCTTTTCAGGTTATAATTCTGGATTGGCTATGCCAGATTCAAGTGAGTCCTATCCACAGAAGTTCAGAAATGAAGACAATCTAGTTGGTCTTGCTCAGGCTATTACAAATAGTATTCTTTCCACAGG
GCGTTTAGATGTTCAAAAGAAATTGTTCACTAGCATACAGCTAGTTGGTGGAGTTGCTTTGACAAAAGGTCTAGTTGGTGCAGTGGAAGAAAGAGTGTTGCATGCTATTCCAGCAAATGTAGATATTGACACCGTGGAGGTGTTGCAGCAGAGGACAGACCCAGTCATTGTTTCTTGGAAGGGCGGCGCCATACTTGGTA
TTCTAGATTACTTCAGTCGAGATCAATGGATTCATCGGGAAGATTGGGTGCATGGTGGAACTAAGATAGGGAGTGGTCGAAAGTACAGAGATTCTCACTTGATTCAAACTCAGGCTTTCTGGTACATTAATTCTTAAATGTGAACAGTCATTGCAAGTTATACAAAGCTGCAGCACATGATATTGCGGGAGCCCAGAAAA
TTGTTCTTATTCATTTGAGAATTACCCGACTTTTTCCTTTATAGATCCATTTGAATGCTTTGGACTCTTGTAAAAATGATATGTTGATGAGCAAATTTGGCTCTTCAACCTGTTATTTCAAGATGTTAAAAAATCAGCCCTGCTTGTTAGTCTGAGTGGTGCAATGCAACCCTTTTTTTTTCAATTTTTAACTTCAATCA
GATATTTCAAGTGTAAATAGCAGCAAGACTGTTGGTTGTTATGTTTCAGACTACATTTGACATTGAGTTGAACACGTAAACTTCATTTCAATACGGCTAAACTATTTCTGATTTTTTATTTTGTTTGTACATGTCTGAGTCGTTACTCTACCATCTTGCCAATATTTTTTTGGCATTTTGAATTGTTCGTGGAAATAGAA
ACTGTAATAAAATATTAGATTTTGGCATTACGAC
>TRINITY_DN120084_c8_g1_i9 from sample A1 / Example unspliced isoform:TGGACTTAGACTTTTATAAATAAAGGTATAGTTACTTCTGTGTGAGAAAAGAAAAAAAATAGCGCATATCATATGTTATAGTTTCGAATCCCGATCTCGCTCCTCCTAATGTAAAGTACATGTATTTAGCCGTTAAGCATTGGCGCCACTTCCAGGGGTTATGATTTCGTTGCCGATTTAAGAACTCTCTCTATCAGCCT
CTCTGCAAAACGTCCACTGGAAACTTCGCTCTTCCAGCAAGATGGATTACCTGAAAACGGTGGTACCTTCTCAACTCATCGCCGAGAGAGGCTCCAATATGGTAGTCATCAATCCAGGTTCCTCGAGTGTTAAAATTGGTCTCGCATCATGGCAAACCCCCGTGGTAATTCCCCATTGCATCGCACATTATATGAGAGGG
CCAATGGACGAGCAAGCCCAAATTGCCAAGAGAAATCGCGAGCAGGTTTTTACATCTCCTGTATCATCTGCCCAGCAATCGGAGCGCGAAGAAGCCTATCATGTGATTGCTTCACACTTGAAGCTACAACCTGCAAATCATGAACGGGGGAAAGAATCCTGGTTTCGTAAGATGGATCACTCTGATGGTTACAATTCTCA
AACAAAGCTGCATGAAGAGACAATATATCCATGGACAGATGTCAGAGAAGAGAAAAATTCAAACTCTCCTGTTATGGGAGTAGATGCAGATGACCAAGgtaatacctttctctaatcttagtcttcttttttcgcacttcgaattttatattccactttgtataatgtaatgcaaattgaaattgctgatcgcagctgca
tcctctactgcttgctgacagGAACAAAGTAATGGATTATCATTGGAAAGTAGGCATATATGGACCCAATGCTGACAGGAACAAAGTGAAGTAATCAACTATCATTGGAAAATAGGCATGTTTTATAGAATCTATTTGGCTAAGCTGCCATGCAATGGGGGTCGTATCTGTCAATCATTAAGAGTAATATTTAGTAATTT
GCTTGCTTTTTATAATGTGCATGGTCACATGTAGAGATCATGTTAAAATTTAAAAAGGGGAACTAGAGGTGACAATGGAACAGTAGGAAGAAGTAAGATCATAGGAATCCGAGCAATTGGGGGGAGCTTGGTAAAAGGTGGGAATTCTGGAAATGATTGAGGAGGAAATGGTTAAGAAAACAGTTGTGATTTTCAACCAG
TAAGGGCAACCAGAAGTGTGTATGGGTAAAGAGATGGATGAGGGTGAAACATTCGAATAACCAACTAGCTATTGCCACTCATATTAGAATTTGGTATTTGAGAAAGAGTAAATGGATGCTAGGTAAAGACCTTATGTGGGAAATCTGGGTTGAATGTCAAATATGAAAAGGGAAAGGAAGAAAGTGAGGCTAAACATGAG
AGTAATGAAAAGAACTTTAAAGTTTAAACCCCAGGTAAGCTGGGAATTAAGAAAGAGAAAACAGGCAGGAGAAAGGCAGGATGTAGGGGTAAAATCAATGAAAAGGAGGAAATTAGCAGCAAGAGAGCTACAAAATATAGGTAAGAGATTGGTAGCGGAAGGCCAACAATCTTGTCTGGATAGAAAGGAAGAAAGTGAGG
CTGAGCATGAGTAAAGAAGAAAACTTTAAACCCTAGGTAATCTGGGAGTTAAAAAAGAGAAAACAGTCAGGAAGAAAGGTAGGATGTCAGGGTATAATCAACAAAGTGGGGGAAATCAGCAGCAAAAGATCTACAAAATATAGGTGAGAAATTGCTAGCAGAAGGCCAACAATCTTGGCTGAATGGAAAGG