sp|Q9M086|DCAF1_ARATH ----> DDB1- and CUL4-associated factor homolog 1

Intron 1 GTGTCTTGGT ... CTGTTTGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	23.23	238	72	11
A2	23.11	173	52	10
A3	24.1	189	60	17
A4	18.35	178	40	3
A5	18.71	113	26	4
A6	19.05	17	4	1
A7	18.8	108	25	8
A8	4.17	23	1	6
A9	9.76	74	8	5
A10	12.5	63	9	0

>TRINITY_DN99164_c0_g1_i1 from sample A3 / Example spliced isoform

TCGAGCTCACCTTCTTTTACTTGTAGACTCATTGCGTCCTAACAAAAGTCATCGTGGTGGGGCACGTAATGCCCCGAGTGCAAGAGCTGCCTATAAACCTATTGACACCAGCAATGAGGCAGTGGAGGTTGTGATTGCGCAACTGCAACGCGACAGAAAACTTGGTCCAACTTTTGTCAGAACTCGTTGGCCAGCAGTAG
AGAAATTCCTTAACTGCAATGGGCATACAATTCTTTTGGAACTGAGTCAGGCACCTCCTGGTGAACGGTACTTGCATGAGTTAGCCTTGTTTGCATTGGGGGTCTTGCACATTGTCACTTTGGTACCAAATGCTCGCAGGC

>TRINITY_DN99164_c0_g1_i2 from sample A3 / Example unspliced isoform:

TCGAGCTCACCTTCTTTTACTTGTAGACTCATTGCGTCCTAACAAAAGTCATCGTGGTGGGGCACGTAATGCCCCGAGTGCAAGAGCTGCCTATAAACCTATTGACACCAGCAATGAGGCAGTGGAGGTTGTGATTGCGCAACTGCAACGCGACAGAAAACTTGGTCCAACTTTTGTCAGAACTCGTTGGCCAGCAGTAG
AGAAATTCCTTAACTGCAATGGGCATACAATTCTTTTGGAACTGAGTCAGgtgtcttggtttttgtggtttccttttcttaattatttataggatgtggttagtatgtgtgctaattgatgctcagcttcaagtaatatctttatattgtgtcatctgtttgtagGCACCTCCTGGTGAACGGTACTTGCATGAGTTAGC
CTTGTTTGCATTGGGGGTCTTGCACATTGTCACTTTGGTACCAAATGCTCGCAGGC