sp|Q8W207|CSN2_ARATH ----> COP9 signalosome complex subunit 2

Intron 1 GTATGCTTTG ... TGCAAACCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	34.61	494	228	284
A2	34.88	494	275	238
A3	35.58	522.5	321	238
A4	33.16	461.5	217	233
A5	39.53	176.5	140	83
A6	35.44	217.5	137	94
A7	33.52	989.5	512	455
A8	31.21	530.5	214	257
A9	32.98	916	472	402
A10	32.45	891	442	388

>TRINITY_DN40759_c0_g1_i3 from sample A8 / Example spliced isoform

CAAGCCGAAAGCGCTTCACTTCACAAAATCTCCACGGGCACGTTATGTGTTAGATAGATATACACAAACTCTCAACGTCCATGGATGGATACACAGTGGTGCAAGAAGCTCGATGATTCTCTAATCGATCAAAAACGTATTTTCTTTTTCGTCTGTTTTCCTCTATCACAACCAAGGCAGCGATACACTGGAATTTCAGC
TTTGATTCGCCACTAATTCCTGCCCTGCCCCCGTAGCAGGGTCCAGCGACCATGGGTTCAGACGCAGATATGGAAGATTATGGGTTTGAATACTCGGAAGAGGAAACAGAGGAGCAGGACGTCGACATTGAAAATCAGTATTACAATTCCAAAGGATGTCCAAAGATGTCCATGGTGGAAATGGGATAGTGCTGAGTTTG
GACAGTTGGTTTGACATGGACATGGACAATACAATATACCTGTCATTGTAACAGTTTGAATATATGAAGAAGACACGTTTTTAAAGTTTGGTAGAGTCTGACCCGCAGGAAGCTCTTGCTGGCTTTGCTGAAGTTGTGAGAATGGAACCTGAAAAAGCAGAATGGGGATTTAAGGCTTTGAAACAAACTGTCAAGTTGTA
CTACCGTCTTGGAAAATACAAAGAGATGATGGATTCTTATCGTGTAATGCTGACATATATTAGATCGGCAGTAACACGAAACTACAGTGAAAAATGTATAAACAATATCATGGATTTTGTTTCTGGTTCTGCCAGTCAGAACTTCGAACTCCTTCAGGAGTTTTATCAGACTACACTCAAGGTCCTTGAAGAAGCGAAAA

>TRINITY_DN40759_c0_g1_i6 from sample A8 / Example unspliced isoform:

CAAGCCGAAAGCGCTTCACTTCACAAAATCTCCACGGGCACGTTATGTGTTAGATAGATATACACAAACTCTCAACGTCCATGGATGGATACACAGTGGTGCAAGAAGCTCGATGATTCTCTAATCGATCAAAAACGTATTTTCTTTTTCGTCTGTTTTCCTCTATCACAACCAAGGCAGCGATACACTGGAATTTCAGC
TTTGATTCGCCACTAATTCCTGCCCTGCCCCCGTAGCAGGGTCCAGCGACCATGGGTTCAGACGCAGATATGGAAGATTATGGGTTTGAATACTCGGAAGAGGAAACAGAGGAGCAGGACGTCGACATTGAAAATCAGTATTACAATTCCAAAGGTTTGGTAGAGTCTGACCCGCAGGAAGCTCTTGCTGGCTTTGCTGA
AGTTGTGAGAATGGAACCTGAAAAAGCAGAATGgtatgctttgattctcttttaaaagatggaacgtgcttttctgctaacaagagaattgtttatgaaagtaggcgccttcaactctcccaagagaggttgagtgattataaaggcaacccaaggatctggtttactaataaatgtttgccaatttccatgcatttcgg
catgagtcgactttactttgtctgcagaatgtgatggtattttttgaatacttgtactgtgtcatcaatgtatgggttttaagttttcttccgtttagagaaactatagtaaatttggtggtttttatcatttgcaaaccagGGGATTTAAGGCTTTGAAACAAACTGTCAAGTTGTACTACCGTCTTGGAAAATACAAA
GAGATGATGGATTCTTATCGTGTAATGCTGACATATATTAGATCGGCAGTAACACGAAACTACAGTGAAAAATGTATAAACAATATCATGGATTTTGTTTCTGGTTCTGCCAGTCAGAACTTCGAACTCCTTCAGGAGTTTTATCAGACTACACTCAAGGTCCTTGAAGAAGCGAAAA

Intron 2 GTATTTTTTG ... TGCAAACCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	48.63	300	71	284
A2	48.97	248	44	238
A3	49.28	245	26	238
A4	49.68	236	39	233
A5	47.7	91	7	83
A6	44.76	116	20	94
A7	47.54	502	19	455
A8	47.33	286	15	257
A9	46.85	456	43	402
A10	46.75	442	30	388

>TRINITY_DN40759_c0_g1_i2 from sample A8 / Example spliced isoform

CAAGCCGAAAGCGCTTCACTTCACAAAATCTCCACGGGCACGTTATGTGTTAGATAGATATACACAAACTCTCAACGTCCATGGATGGATACACAGTGGTGCAAGAAGCTCGATGATTCTCTAATCGATCAAAAACGTATTTTCTTTTTCGTCTGTTTTCCTCTATCACAACCAAGGCAGCGATACACTGGAATTTCAGC
TTTGATTCGCCACTAATTCCTGCCCTGCCCCCGTAGCAGGGTCCAGCGACCATGGGTTCAGACGCAGATATGGAAGATTATGGGTTTGAATACTCGGAAGAGGAAACAGAGGAGCAGGACGTCGACATTGAAAATCAGTATTACAATTCCAAAGGTTTGGTAGAGTCTGACCCGCAGGAAGCTCTTGCTGGCTTTGCTGA
AGTTGTGAGAATGGAACCTGAAAAAGCAGAATGGTATGCTTTGATTCTCTTTTAAAAGATGGAACGTGCTTTTCTGCTAACAAGAGAATTGTTTATGAAAGTAGGCGCCTTCAACTCTCCCAAGAGAGGTTGAGTGATTATAAAGGCAACCCAAGGATCTGGTTTACTAATAAATGTTTGCCAATTTCCATGCATTTCGG
CATGAGTCGACTTTACTTTGTCTGCAGAATGTGATGGGGATTTAAGGCTTTGAAACAAACTGTCAAGTTGTACTACCGTCTTGGAAAATACAAAGAGATGATGGATTCTTATCGTGTAATGCTGACATATATTAGATCGGCAGTAACACGAAACTACAGTGAAAAATGTATAAACAATATCATGGATTTTGTTTCTGGTT
CTGCCAGTCAGAACTTCGAACTCCTTCAGGAGTTTTATCAGACTACACTCAAGGTCCTTGAAGAAGCGAAAA

>TRINITY_DN40759_c0_g1_i6 from sample A8 / Example unspliced isoform:

CAAGCCGAAAGCGCTTCACTTCACAAAATCTCCACGGGCACGTTATGTGTTAGATAGATATACACAAACTCTCAACGTCCATGGATGGATACACAGTGGTGCAAGAAGCTCGATGATTCTCTAATCGATCAAAAACGTATTTTCTTTTTCGTCTGTTTTCCTCTATCACAACCAAGGCAGCGATACACTGGAATTTCAGC
TTTGATTCGCCACTAATTCCTGCCCTGCCCCCGTAGCAGGGTCCAGCGACCATGGGTTCAGACGCAGATATGGAAGATTATGGGTTTGAATACTCGGAAGAGGAAACAGAGGAGCAGGACGTCGACATTGAAAATCAGTATTACAATTCCAAAGGTTTGGTAGAGTCTGACCCGCAGGAAGCTCTTGCTGGCTTTGCTGA
AGTTGTGAGAATGGAACCTGAAAAAGCAGAATGGTATGCTTTGATTCTCTTTTAAAAGATGGAACGTGCTTTTCTGCTAACAAGAGAATTGTTTATGAAAGTAGGCGCCTTCAACTCTCCCAAGAGAGGTTGAGTGATTATAAAGGCAACCCAAGGATCTGGTTTACTAATAAATGTTTGCCAATTTCCATGCATTTCGG
CATGAGTCGACTTTACTTTGTCTGCAGAATGTGATGgtattttttgaatacttgtactgtgtcatcaatgtatgggttttaagttttcttccgtttagagaaactatagtaaatttggtggtttttatcatttgcaaaccagGGGATTTAAGGCTTTGAAACAAACTGTCAAGTTGTACTACCGTCTTGGAAAATACAAA
GAGATGATGGATTCTTATCGTGTAATGCTGACATATATTAGATCGGCAGTAACACGAAACTACAGTGAAAAATGTATAAACAATATCATGGATTTTGTTTCTGGTTCTGCCAGTCAGAACTTCGAACTCCTTCAGGAGTTTTATCAGACTACACTCAAGGTCCTTGAAGAAGCGAAAA