sp|Q940B8|KN13A_ARATH ----> Kinesin-like protein KIN-13A
Intron 1 GTGAGTTTTC ... TCCAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.44 | 8 | 15 | 14 |
| A2 | 60 | 11 | 23 | 10 |
| A3 | 55.56 | 10 | 16 | 9 |
| A4 | 80.39 | 5 | 19 | 22 |
| A5 | 49.37 | 20 | 17 | 22 |
| A6 | 28.57 | 5 | 2 | 2 |
| A7 | 19.35 | 25 | 2 | 10 |
| A8 | 26.53 | 18 | 4 | 9 |
| A9 | 9.68 | 14 | 2 | 1 |
| A10 | 13.79 | 25 | 0 | 8 |
>TRINITY_DN128892_c4_g1_i2 from sample A1 / Example spliced isoformTGATGATTGTGTGCGAGGAGCCGTTGAATAGTAATAAGTTTATATCACGGTTTTCTAATATCATTTTATACAGAGACTCGGCCGAATCTGCCGAAAGCCAGTGAATATCTAGCCAAACAATTTGTTTTTTTGGATAGAATACTTAATCATACGTCTTCCAAATTTTTTTTCATCACTATTGGAGAAAATTACAGCCTACT
TACTGAGAAGGAGGTAGCAGGCATTGCGGAAATGATATAATTTCAAGG
>TRINITY_DN128892_c4_g1_i7 from sample A1 / Example unspliced isoform:TGATGATTGTGTGCGAGGAGCCGTTGAATAGTAATAAGTTTATATCACGGTTTTCTAATATCATTTTATACAGAGACTCGGCCGAATCTGCCGAAAGCCAGgtgagttttcacgtttaaattgttattttgaaaatttcttgttctttaaaatgggcaatgaagaacaattaaatcgatcattgaatagaaattagaact
tctcaggagtcgttctttaactgcctacaatcaaggctctgtactgaagtctttacttccctcagggtttgaatgaccaaaattagggttactggcactagatgcgtattctttagtgatcagggtttgaatggccgaatgtaaccttactgccattttcacttttttgtttaggctgcatagaacctatgttagcaaag
acctgaccgcgagactcgtttctccttcttgttcacgttcctgacaggtcgttcacgtttacgattcctggcaaccgtttctcattctgttctctttcccataactggaaacacggcatgcaagcgtttgcagataataatcatagttggtattgactagaacaaattacgctaacgggctttcttttacaggtgaggtt
gacagagtattgaactgttcaccagggttcattttgccatgccccaacctaatgttgtcaaaaagggatgaagctgggtacaagcctcggtgaatttggcagaatagatacccgatactcttcagacctgacaactaagccgaaggaagtctgtgttctgcagtggagcctccaatattctagcagttttttccaagcag
ttttcaatttgaagaacaaatttattcttaaattcatagcagaatttgatttgacctacctaagtgacgcagagaaattgtatctatctttacaaaagatcaaaaacatcaacagaatggatgaagattgaaaatatgactgtacataaaattcggatgcatgtggaatcatcaggctgataattttgaagtacaactac
attgcaaagtgcagagctaagaacagcccaaaagttatactacacagaatgtagaacacctagtgcagtttgtagatatcatgtattagaacagaaataggtagacacactgcactctatgaaggcacgcatgaacgtaatgtttcatatgacattgttgatggccatatcaaatttgtaagtcaatcattgaacaacta
taattcacttatttcctgctggatactagatcgggtaaaaagctctgactcgtgttttgcctcttagaaatatgcacttcaggccattagcagcactggaccttttctagagagataatatgccaaaatatttcagatatatgacgaccatttcgttttgtaaagtatctatctccatcgctattgaagttcaagttttg
gacttaggcacttttacaaggtatcccctcccccgcctaactgcaaatttgaaggagattttcataagaattgaattttacttgaaaagtgaatttgatgttggtgcctatcatgttggcaacatttctgctgccgacttaatacttctaattttttgtgtaaaaagcatattttcattgccatcaaaatacaaacttta
atcttcattgagtcctcttccctcctttttcttcctcaatccaagttgaacttcatataattttttaacaatgttgattattcaaatttaggtgactgttatagaaggcccagtagttgggtgcatatattctgcaaatgtagctttctgctcacaagctacctttttggatggcacattttgcagaatttccgttggat
tggttctatatcatacagccttttataggaatatcactataatttgattttgtgctgggcaggcttagggttcaaaatgtaaatagcttaaaatgtgttaaagatataactttaagtgattctatacgtcttcaaatatgttaaaacataaaagatagcttaatatcagataaaagaaaggggatcttcatgggaggaag
gagccagattggatactaattggtgagttgtgcccacataacagcaactacctcacacatttttcgggatttatagagctcacatgtgagacagtaccaagaagaaattaacattaaatttacttgatttcatattgcacagtatcatatatctatagtatataaatttgtttttgaatttggatgctgaggataaggat
agatttccagctcaaaatagatcaagctagatggccaaatcttctctcaaatagcctaccctatctccacttaaccctactactagtatcagcaaaattgggtgcccatctaaatgcctaagaatgcttggtattttggaattgtttttgttgctttccattgaacatatttgcattggctataagctgtggaagaattc
caactacttgttaccgcctgaaaatgcaagtccaatttgcatttcagagacacggctccagcatatatgaactttggagcatagtatgagtcatttgagaggtggtaatgaagatctatgtgttctccttttctttcacatgttgagggatattcacataattcaaaacatgttttgttgctgagttaacatatttggaa
gcaaggttgcacatgtagcagacatttacctttcggtgcatgcatctacacattttcatgcatattcctccattggaaggtgcctttggggtgtcttcattgtgtgtcaaggaaaacactacatatttggaggcctttctcaccacttgggggtcatctcatgttgcacgaggcatttctacatatttgaaggcttacgg
aaacaatgaaggtttctagagagcacccatcctctcaggaagttcttggaggtttccatgacataatgaggggttaagtgcataaaaaaagtggaacgccatagctttggagttgcctcaccttaaaaacagtgatgtagaatcagacctaatctttagaaaaattctcctcttttgaagtggaacattcaaatgaagca
ccctagagtgtagggattgtgccaaatgtatttataaatagtggccatgataaaagccaaaagctcaagaatatagatttgaaggaccaagagaaagaaaacaaggacaattcaacgactagctaataatcttgtaaaagaattgacattcatgggtacagtgagtctcaaagtggggagatctataatgaccctatata
ggaagatcatcataaagacataagcaacactatacacgttagaatatgttaacaatatatgcctagagtatgttaatgggtagcctaatatcatagtaaagaaaggagacctggatgagaggatgtagtcatattaaataatcagtagtgatggatgcacacctccaagtgggcttgcataatggcagccatacaacacc
tttattcagcctccttacaatatagcaggggtacacacacatgttcacatgaactagtatatacgataaatggagaacttgcagggtcatcttctccatcagccaatgcttcctactcttcattttatgctaacttctccataattgcaacaatttcagccacaaaatataatgagtgtatttcttatgataatttgggc
ctttggacacatttacatactagagaacttgcagggtcattttctccatcagccaatgcttccttctcttcattttatactaaattcctcttcataattgcaacaatatcagcaacaaaatatactgaatgtatttcttatggtaatttgggcctttcgacatatttacatactgaatctcttcttgtatttccaatgca
gTGAATATCTAGCCAAACAATTTGTTTTTTTGGATAGAATACTTAATCATACGTCTTCCAAATTTTTTTTCATCACTATTGGAGAAAATTACAGCCTACTTACTGAGAAGGAGGTAGCAGGCATTGCGGAAATGATATAATTTCAAGGTATGCATCTGTGCTTTCTACTTATTCATAGTTTGTATTTTACTTTTTTTATT
CAAAGATAGGAATTTATATCTAAATACATCATTATGAGCCTTAGTTTCAGCCTTAGAATTAGTGATTGTAAGTTTGTATTGGCTTCACCTCTATCCTTGTGCGGATTTTTTAAATAAAGAAGTTGCTTGGGATGTAATAACTCTCACTAGGAGCTGTAAATTTTCAGACCCTAGTGACTGCTGTCCTATGTTTCTTTATT
TAAATAAATCAAATCTTGAATTTATTCAATAATAGAAATAAATTTATGAACATGCAACACTCACC
Intron 2 GCTGCATAGA ... TTCCTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.88 | 17 | 15 | 3 |
| A2 | 48.08 | 27 | 25 | 6 |
| A3 | 37.7 | 38 | 23 | 10 |
| A4 | 46 | 27 | 23 | 5 |
| A5 | 34 | 33 | 17 | 0 |
| A6 | 47.22 | 38 | 34 | 0 |
| A7 | 48.08 | 54 | 50 | 6 |
| A8 | 45.1 | 28 | 23 | 1 |
| A9 | 48.6 | 55 | 52 | 5 |
| A10 | 48.87 | 68 | 65 | 5 |
>TRINITY_DN115340_c4_g4_i3 from sample A2 / Example spliced isoformGCAGATTTCACATGGTTGTTGTTGATGATGATGATTGTGTGCGAGGAGCCGTTGAGTAGTAATAAGTTTATATCACGGTTTTCTAATATTATTTTATACAGAGACTCGGCCGAATCTGCCGAAAGCCAGGTGAGGTTGACAGAGTATTGAACTGTTCACCAGGGTTCCATTTGCCATGCCCCAACCTAATGTTGTCAAAA
AGGGATGAAGCTGGGTACAAGCCTCGGTGAATTTGGCAGAATAGATACCCGATACTCTTCAGACCTGACAACTAAGCCGAAGGAAGTCTGTGTTCTGCAGTGGAGCCTCCAATATTCTAGCAGTTTTTTCCAAGCAGTTTTCAATTTGAAGAACAAATTTATTCTTAAATTCATAGCAGAATTTGATTTGACCTACCTAA
GTGACGCAGAGAAATTGTATCTATCTTTACAAAAGATCAAAAACATCAACAGAATGGATGAAGATTGAAAATATGACTGTACATAAAATTCGGATGCATGTGGAATCATCAGGCTGATAATTTTGAAGTACAACTACATTGCAAAGTGCAGAGCTAAGAACAGCCCAAAAGTTATACTACACAGAATGTAGAACACCTAG
TGCAGTTTGTAGATATCATGTATTAGAACAGAAATAGGTAGACACACTGCACTCTATGAAGGCACGCATGAACGTAATGTTTCATATGACATTGTTGATGGCCATATCAAATTTGTAAGTCAATCATTGAACAACTATAATTCACTTATTTCCTGCTGGATACTAGATCGGGTAAAAAGCTCTGACTCGTGTTTTGCCTC
TTAGAAATATGCACTTCAGGCCATTAGCAGCACTGGACCTTTTCTAGAGAGATAATATGCCAAAATATTTCAGATATATGACGACCATTTCGTTTTGTAAAGTATCTATCTCCATCGCTATTGAAGTTCAAATTTTGGACTTAGTCACTTTTACAAGGTATCCCCTCCCCCGCCTAACTGCAAATTTGAAGGAG
>TRINITY_DN115340_c4_g4_i1 from sample A2 / Example unspliced isoform:GCAGATTTCACATGGTTGTTGTTGATGATGATGATTGTGTGCGAGGAGCCGTTGAGTAGTAATAAGTTTATATCACGGTTTTCTAATATTATTTTATACAGAGACTCGGCCGAATCTGCCGAAAGCCAGgctgcatagaacctatgttaccaaagacctgaccacgagactcgtttctccttcttgttcacgttcctgac
agGTGAGGTTGACAGAGTATTGAACTGTTCACCAGGGTTCCATTTGCCATGCCCCAACCTAATGTTGTCAAAAAGGGATGAAGCTGGGTACAAGCCTCGGTGAATTTGGCAGAATAGATACCCGATACTCTTCAGACCTGACAACTAAGCCGAAGGAAGTCTGTGTTCTGCAGTGGAGCCTCCAATATTCTAGCAGTTTT
TTCCAAGCAGTTTTCAATTTGAAGAACAAATTTATTCTTAAATTCATAGCAGAATTTGATTTGACCTACCTAAGTGACGCAGAGAAATTGTATCTATCTTTACAAAAGATCAAAAACATCAACAGAATGGATGAAGATTGAAAATATGACTGTACATAAAATTCGGATGCATGTGGAATCATCAGGCTGATAATTTTGAA
GTACAACTACATTGCAAAGTGCAGAGCTAAGAACAGCCCAAAAGTTATACTACACAGAATGTAGAACACCTAGTGCAGTTTGTAGATATCATGTATTAGAACAGAAATAGGTAGACACACTGCACTCTATGAAGGCACGCATGAACGTAATGTTTCATATGACATTGTTGATGGCCATATCAAATTTGTAAGTCAATCAT
TGAACAACTATAATTCACTTATTTCCTGCTGGATACTAGATCGGGTAAAAAGCTCTGACTCGTGTTTTGCCTCTTAGAAATATGCACTTCAGGCCATTAGCAGCACTGGACCTTTTCTAGAGAGATAATATGCCAAAATATTTCAGATATATGACGACCATTTCGTTTTGTAAAGTATCTATCTCCATCGCTATTGAAGT
TCAAATTTTGGACTTAGTCACTTTTACAAGGTATCCCCTCCCCCGCCTAACTGCAAATTTGAAGGAG
Intron 3 GTGAGTTTTC ... TCTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 5 | 15 | 15 |
| A2 | 53.33 | 14 | 23 | 9 |
| A3 | 52.38 | 15 | 16 | 17 |
| A4 | 60 | 8 | 19 | 5 |
| A5 | 36.84 | 18 | 17 | 4 |
| A6 | 11.11 | 8 | 2 | 0 |
| A7 | 26.32 | 7 | 2 | 3 |
| A8 | 23.81 | 8 | 4 | 1 |
| A9 | 25.93 | 10 | 2 | 5 |
| A10 | 14.29 | 6 | 0 | 2 |
>TRINITY_DN128892_c4_g1_i5 from sample A1 / Example spliced isoformTGATGATTGTGTGCGAGGAGCCGTTGAATAGTAATAAGTTTATATCACGGTTTTCTAATATCATTTTATACAGAGACTCGGCCGAATCTGCCGAAAGCCAGGTGAGGTTGACAGAGTATTGAACTGTTCACCAGGGTTCCATTTGCCATGCCCCAACCTAATGTTGTCAAAAAGGGATGAAGCTGGGTACAAGCCTCGGT
GAATTTGGCAGAATAGATACCCGATACTCTTCAGACCTGACAACTAAGCCGAAGGAAGTCTGTGTTCTGCAGTGGAGCCTCCAATATTCTAGCAGTTTTTTCCAAGCAGTTTTCAATTTGAAGAACAAATTTATTCTTAAATTCATAGCAGAATTTGATTTGACCTACCTAAGTGACGCAGAGAAATTGTATCTATCTTT
ACAAAAGATCAAAAACATCAACAGAATGGATGAAGATTGAAAATATGACTGTACATAAAATTCGGATGCATGTGGAATCATCAGGCTGATAATTTTGAAGTACAACTACATTGCAAAGTGCAGAGCTAAGAACAGCCCAAAAGTTATACTACACAGAATGTAGAACACCTAGTGCAGTTTGTAGATATCATGTATTAGAA
CAGAAATAGGTAGACACACTGCACTCTATGAAGGCACGCATGAACGTAATGTTTCATATGACATTGTTGATGGCCATATCAAATTTGTAAGTCAATCATTGAACAACTATAATTCACTTATTTCCTGCTGGATACTAGATCGGGTAAAAAGCTCTGACTCGTGTTTTGCCTCTTAGAAATATGCACTTCAGGCCATTAGC
AGCACTGGACCTTTTCTAGAGAGATAATATGCCAAAATATTTCAGATATATGACGACCATTTCGTTTTGTAAAGTATCTATCTCCATCGCTATTGAAGTTCAAATTTTGGACTTAGTCACTTTTACAAGGTATCCCCTCCCCCGCCTAACTGCAAATTTGAAGGAGATTTTCATAAGAATTGAATTTTACTTGAAAAGTG
AATTTGATGTTGGTGCCTATCATGTTGGCAACATTTCTGCTGCCGACTTAATACTTCTAATTTTTTGTGTAAAAAGCATATTTTCATTGCCATCAAAATACAAACTTTAATCTTCATTGAGTCCTCTTCCCTCCTTTTTCTTCCTCAATCCAAGTTGAACTTCATATAATTTTTTAACAATGTTGATTATTCAAATTTAG
GTGACTGTTATAGAAGGCCCAGTAGTTGGGTGCATATATTCTGCAAATGTAGCTTTCTGCTCACAAGCTACCTTTTTGGATGGCACATTTTGCAGAATTTCCGTTGGATTGGTTCTATATCATACAGCCTTTTATAGGAATATCACTATAATTTGATTTTGTGCTGGGCAGGCTTAGGGTTCAAAATGTAAATAGCTTAA
AATGTGTTAAAGATATAACTTTAAGTGATTCTATACGTCTTCAAATATGTTAAAACATAAAAGATAGCTTAATATCAGATAAAAGAAAGGGGATCTTCATGGGAGGAAGGAGCCAGATTGGATACTAATTGGTGAGTTGTGCCCACATAACAGCAACTACCTCACACATTTTTCGGGATTTATAGAGCTCACATGTGAGA
CAGTACCAAGAAGAAATTAACATTAAATTTACTTGATTTCATATTGCACAGTATCATATATCTATAGTATATAAATTTGTTTTTGAATTTGGATGCTGAGGATAAGGATAGATTTCCAGCTCAAAATAGATCAAGCTAGATGGCCAAATCTTCTCTCAAATAGCCTACCCTATCTCCACTTAACCCTACTACTAGTATCA
GCAAAATTGGGTGCCCATCTAAATGCCTAAGAATGCTTGGTATTTTGGAATTGTTTTTGTTGCTTTCCATTGAACATATTTGCATTGGCTATAAGCTGTGGAAGAATTCCAACTACTTGTTACCGCCTGAAAATGCAAGTCCAATTTGCATTTCAGAGACACGGCTCCAGCATATATGAACTTTGGAGCATAGTATGAGT
CATTTGAGAGGTGGTAATGAAGATCTATGTGTTCTCCTTTTCTTTCACATGTTGAGGGATATTCACATAATTCAAAACATGTTTTGTTGCTGAGTTAACATATTTGGAAGCAAGGTTGCACATGTAGCAGACATTTACCTTTCGGTGCATGCATCTACACATTTTCATGCATATTCCTCCATTGGAAGGTGCCTTTGGGG
TGTCTTCATTGTGTGTCAAGGAAAACACTACATATTTGGAGGCCTTTCTCACCACTTGGGGGTCATCTCATGTTGCACGAGGCATTTCTACATATTTGAAGGCTTACGGAAACAATGAAGGTTTCTAGAGAGCACCCATCCTCTCAGGAAGTTCTTGGAGGTTTCCATGACATAATGAGGGGTTAAGTGCATAAAAAAAG
TGGAACGCCATAGCTTTGGAGTTGCCTCACCTTAAAAACAGTGATGTAGAATCAGACCTAATCTTTAGAAAAATTCTCCTCTTTTGAAGTGGAACATTCAAATGAAGCACCCTAGAGTGTAG
>TRINITY_DN128892_c4_g1_i1 from sample A1 / Example unspliced isoform:TGATGATTGTGTGCGAGGAGCCGTTGAATAGTAATAAGTTTATATCACGGTTTTCTAATATCATTTTATACAGAGACTCGGCCGAATCTGCCGAAAGCCAGgtgagttttcacgtttaaattgttattttgaaaatttcttgttctttaaaatgggcaatgaagaacaattaaatcgatcattgaatagaaattagaact
tctcaggagtcgttctttaactgcctacaatcaaggctctgtactgaagtctttacttccctcagggtttgaatgaccaaaattagggttactggcactagatgcgtattctttagtgatcagggtttgaatggccgaatgtaaccttactgccattttcacttttttgtttaggctgcatagaacctatgttaccaaag
acctgaccacgagactcgtttctccttcttgttcacgttcctgacaggtcgttcacgtttacgattcctggcaaccgtttctcattctgttctctttcccataactggaaacacggcatgcaagcgtttgcagataataatcatagttggtattgactagaacaaattacgctaacgggctttcttttacagGTGAGGTT
GACAGAGTATTGAACTGTTCACCAGGGTTCATTTTGCCATGCCCCAACCTAATGTTGTCAAAAAGGGATGAAGCTGGGTACAAGCCTCGGTGAATTTGGCAGAATAGATACCCGATACTCTTCAGACCTGACAACTAAGCCGAAGGAAGTCTGTGTTCTGCAGTGGAGCCTCCAATATTCTAGCAGTTTTTTCCAAGCAG
TTTTCAATTTGAAGAACAAATTTATTCTTAAATTCATAGCAGAATTTGATTTGACCTACCTAAGTGACGCAGAGAAATTGTATCTATCTTTACAAAAGATCAAAAACATCAACAGAATGGATGAAGATTGAAAATATGACTGTACATAAAATTCGGATGCATGTGGAATCATCAGGCTGATAATTTTGAAGTACAACTAC
ATTGCAAAGTGCAGAGCTAAGAACAGCCCAAAAGTTATACTACACAGAATGTAGAACACCTAGTGCAGTTTGTAGATATCATGTATTAGAACAGAAATAGGTAGACACACTGCACTCTATGAAGGCACGCATGAACGTAATGTTTCATATGACATTGTTGATGGCCATATCAAATTTGTAAGTCAATCATTGAACAACTA
TAATTCACTTATTTCCTGCTGGATACTAGATCGGGTAAAAAGCTCTGACTCGTGTTTTGCCTCTTAGAAATATGCACTTCAGGCCATTAGCAGCACTGGACCTTTTCTAGAGAGATAATATGCCAAAATATTTCAGATATATGACGACCATTTCGTTTTGTAAAGTATCTATCTCCATCGCTATTGAAGTTCAAGTTTTG
GACTTAGGCACTTTTACAAGGTATCCCCTCCCCCGCCTAACTGCAAATTTGAAGGAGATTTTCATAAGAATTGAATTTTACTTGAAAAGTGAATTTGATGTTGGTGCCTATCATGTTGGCAACATTTCTGCTGCCGACTTAATACTTCTAATTTTTTGTGTAAAAAGCATATTTTCATTGCCATCAAAATACAAACTTTA
ATCTTCATTGAGTCCTCTTCCCTCCTTTTTCTTCCTCAATCCAAGTTGAACTTCATATAATTTTTTAACAATGTTGATTATTCAAATCTAGGTGACTGTTATAGAAGGGTCAGTAGTTGGGTGCATATATTCTGCAAATGTAGCTTTCTGCTCACAAGCTACCTTTTTGGATGGCACATTTTGCAGAATTTCCGTTGGAT
TGGTTCTATATCATACAGCCTTTTATAGGAATATCACTATAATTTGATTTTGTGCTGGGCAGGCTTAGGGTTCAAAATGTAAATAGCTTAAAATGTGTTAAAGATATAACTTTAAGTGATTCTATACGTCTTCAAATATGTTAAAACATAAAAGATAGCTTAATATCAGATAAAAGAAAGGGGATCTTCATGGGAGGAAG
GAGCCAGATTGGATACTAATTGGTGAGTTGTGCCCACATAACAGCAACTACCTCACACATTTTTCGGGATTTATAGAGCTCACATGTGAGACAGTACCAAGAAGAAATTAACATTAAATTTACTTGATTTCATATTGCACAGTATCATATATCTATAGTATATAAATTTGTTTTTGAATTTGGATGCTGAGGATAAGGAT
AGATTTCCAGCTCAAAATAGATCAAGCTAGATGGCCAAATCTTCTCTCAAATAGCCTACCCTATCTCCACTTAACCCTACTACTAGTATCAGCAAAATTGGGTGCCCATCTAAATGCCTAAGAATGCTTGGTATTTTGGAATTGTTTTTGTTGCTTTCCATTGAACATATTTGCATTGGCTATAAGCTGTGGAAGAATTC
CAACTACTTGTTACCGCCTGAAAATGCAAGTCCAATTTGCATTTCAGAGACACGGCTCCAGCATATATGAACTTTGGAGCATAGTATGAGTCATTTGAGAGGTGGTAATGAAGATCTATGTGTTCTCCTTTTCTTTCACATGTTGAGGGATATTCACATAATTCAAAACATGTTTTGTTGCTGAGTTAACATATTTGGAA
GCAAGGTTGCACATGTAGCAGACATTTACCTTTCGGTGCATGCATCTACACATTTTCATGCATATTCCTCCATTGGAAGGTGCCTTTGGGGTGTCTTCATTGTGTGTCAAGGAAAACACTACATATTTGGAGGCCTTTCTCACCACTTGGGGGTCATCTCATGTTGCACGAGGCATTTCTACATATTTGAAGGCTTACGG
AAACAATGAAGGTTTCTAGAGAGCACCCATCCTCTCAGGAAGTTCTTGGAGGTTTCCATGACATAATGAGGGGTTAAGTGCATAAAAAAAGTGGAACGCCATAGCTTTGGAGTTGCCTCACCTTAAAAACAGTGATGTAGAATCAGACCTAATCTTTAGAAAAATTCTCCTCTTTTGAAGTGGAACATTCAAATGAAGCA
CCCTAGAGTGTAGAGATTGTGCCAAATCTATTTATAAATAGTGGCCGTGATAAAAGCCAAAAGCTCAAGAATATAGATTTGAAGGACCAAGAGAAAGAAAACAAGGACAATTCAACGACTAGCTAATAATCTTGTAAAAGAATTGACATTCATGGGTACAGTGAGTCTCAAAGTGGGGAGATCTATAATGACCCTATATA
GGAAGATCATCATAAAGACATAAGCAACACTA
Intron 4 GCTGCATAGA ... TCTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.48 | 17 | 16 | 15 |
| A2 | 48.08 | 27 | 25 | 9 |
| A3 | 40.63 | 38 | 26 | 17 |
| A4 | 49.06 | 27 | 26 | 5 |
| A5 | 35.29 | 33 | 18 | 4 |
| A6 | 47.22 | 38 | 34 | 0 |
| A7 | 47.57 | 54 | 49 | 3 |
| A8 | 45.1 | 28 | 23 | 1 |
| A9 | 48.6 | 55 | 52 | 5 |
| A10 | 48.87 | 68 | 65 | 2 |
>TRINITY_DN115340_c4_g4_i3 from sample A2 / Example spliced isoformGCAGATTTCACATGGTTGTTGTTGATGATGATGATTGTGTGCGAGGAGCCGTTGAGTAGTAATAAGTTTATATCACGGTTTTCTAATATTATTTTATACAGAGACTCGGCCGAATCTGCCGAAAGCCAGGTGAGGTTGACAGAGTATTGAACTGTTCACCAGGGTTCCATTTGCCATGCCCCAACCTAATGTTGTCAAAA
AGGGATGAAGCTGGGTACAAGCCTCGGTGAATTTGGCAGAATAGATACCCGATACTCTTCAGACCTGACAACTAAGCCGAAGGAAGTCTGTGTTCTGCAGTGGAGCCTCCAATATTCTAGCAGTTTTTTCCAAGCAGTTTTCAATTTGAAGAACAAATTTATTCTTAAATTCATAGCAGAATTTGATTTGACCTACCTAA
GTGACGCAGAGAAATTGTATCTATCTTTACAAAAGATCAAAAACATCAACAGAATGGATGAAGATTGAAAATATGACTGTACATAAAATTCGGATGCATGTGGAATCATCAGGCTGATAATTTTGAAGTACAACTACATTGCAAAGTGCAGAGCTAAGAACAGCCCAAAAGTTATACTACACAGAATGTAGAACACCTAG
TGCAGTTTGTAGATATCATGTATTAGAACAGAAATAGGTAGACACACTGCACTCTATGAAGGCACGCATGAACGTAATGTTTCATATGACATTGTTGATGGCCATATCAAATTTGTAAGTCAATCATTGAACAACTATAATTCACTTATTTCCTGCTGGATACTAGATCGGGTAAAAAGCTCTGACTCGTGTTTTGCCTC
TTAGAAATATGCACTTCAGGCCATTAGCAGCACTGGACCTTTTCTAGAGAGATAATATGCCAAAATATTTCAGATATATGACGACCATTTCGTTTTGTAAAGTATCTATCTCCATCGCTATTGAAGTTCAAATTTTGGACTTAGTCACTTTTACAAGGTATCCCCTCCCCCGCCTAACTGCAAATTTGAAGGAG
>TRINITY_DN115340_c4_g4_i2 from sample A2 / Example unspliced isoform:GCAGATTTCACATGGTTGTTGTTGATGATGATGATTGTGTGCGAGGAGCCGTTGAGTAGTAATAAGTTTATATCACGGTTTTCTAATATTATTTTATACAGAGACTCGGCCGAATCTGCCGAAAGCCAGgctgcatagaacctatgttaccaaagacctgaccacgagactcgtttctccttcttgttcacgttcctgac
aggtcgttcacgtttacgattcctggcaaccgtttctcattctgttctctttcccataactggaaacacggcatgcaagcgtttgcagataataatcatagttggtattgactagaacaaattacgctaacgggctttcttttacagGTGAGGTTGACAGAGTATTGAACTGTTCACCAGGGTTCATTTTGCCATGCCCC
AACCTAATGTTGTCAAAAAGGGATGAAGCTGGGTACAAGCCTCGGTGAATTTGGCAGAATAGATACCCGATACTCTTCAGACCTGACAACTAAGCCGAAGGAAGTCTGTGTTCTGCAGTGGAGCCTCCAATATTCTAGCAGTTTTTTCCAAGCAGTTTTCAATTTGAAGAACAAATTTATTCTTAAATTCATAGCAGAAT
TTGATTTGACCTACCTAAGTGACGCAGAGAAATTGTATCTATCTTTACAAAAGATCAAAAACATCAACAGAATGGATGAAGATTGAAAATATGACTGTACATAAAATTCGGATGCATGTGGAATCATCAGGCTGATAATTTTGAAGTACAACTACATTGCAAAGTGCAGAGCTAAGAACAGCCCAAAAGTTATACTACAC
AGAATGTAGAACACCTAGTGCAGTTTGTAGATATCATGTATTAGAACAGAAATAGGTAGACACACTGCACTCTATGAAGGCACGCATGAACGTAATGTTTCATATGACATTGTTGATGGCCATATCAAATTTGTAAGTCAATCATTGAACAACTATAATTCACTTATTTCCTGCTGGATACTAGATCGGGTAAAAAGCTC
TGACTCGTGTTTTGCCTCTTAGAAATATGCACTTCAGGCCATTAGCAGCACTGGACCTTTTCTAGAGAGATAATATGCCAAAATATTTCAGATATATGACGACCATTTCGTTTTGTAAAGTATCTATCTCCATCGCTATTGAAGTTCAAATTTTGGACTTAGTCACTTTTACAAGGTATCCCCTCCCCCGCCTAACTGCA
AATTTGAAGGAG
Intron 5 GTCGTTCACG ... TCTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 76.92 | 3 | 5 | 15 |
| A2 | 58.62 | 6 | 8 | 9 |
| A3 | 58.33 | 10 | 11 | 17 |
| A4 | 65.52 | 5 | 14 | 5 |
| A5 | 100 | 0 | 6 | 4 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 25 | 6 | 1 | 3 |
| A8 | 33.33 | 1 | 0 | 1 |
| A9 | 33.33 | 5 | 0 | 5 |
| A10 | 28.57 | 5 | 2 | 2 |
>TRINITY_DN115340_c4_g4_i1 from sample A2 / Example spliced isoformGCAGATTTCACATGGTTGTTGTTGATGATGATGATTGTGTGCGAGGAGCCGTTGAGTAGTAATAAGTTTATATCACGGTTTTCTAATATTATTTTATACAGAGACTCGGCCGAATCTGCCGAAAGCCAGGCTGCATAGAACCTATGTTACCAAAGACCTGACCACGAGACTCGTTTCTCCTTCTTGTTCACGTTCCTGAC
AGGTGAGGTTGACAGAGTATTGAACTGTTCACCAGGGTTCCATTTGCCATGCCCCAACCTAATGTTGTCAAAAAGGGATGAAGCTGGGTACAAGCCTCGGTGAATTTGGCAGAATAGATACCCGATACTCTTCAGACCTGACAACTAAGCCGAAGGAAGTCTGTGTTCTGCAGTGGAGCCTCCAATATTCTAGCAGTTTT
TTCCAAGCAGTTTTCAATTTGAAGAACAAATTTATTCTTAAATTCATAGCAGAATTTGATTTGACCTACCTAAGTGACGCAGAGAAATTGTATCTATCTTTACAAAAGATCAAAAACATCAACAGAATGGATGAAGATTGAAAATATGACTGTACATAAAATTCGGATGCATGTGGAATCATCAGGCTGATAATTTTGAA
GTACAACTACATTGCAAAGTGCAGAGCTAAGAACAGCCCAAAAGTTATACTACACAGAATGTAGAACACCTAGTGCAGTTTGTAGATATCATGTATTAGAACAGAAATAGGTAGACACACTGCACTCTATGAAGGCACGCATGAACGTAATGTTTCATATGACATTGTTGATGGCCATATCAAATTTGTAAGTCAATCAT
TGAACAACTATAATTCACTTATTTCCTGCTGGATACTAGATCGGGTAAAAAGCTCTGACTCGTGTTTTGCCTCTTAGAAATATGCACTTCAGGCCATTAGCAGCACTGGACCTTTTCTAGAGAGATAATATGCCAAAATATTTCAGATATATGACGACCATTTCGTTTTGTAAAGTATCTATCTCCATCGCTATTGAAGT
TCAAATTTTGGACTTAGTCACTTTTACAAGGTATCCCCTCCCCCGCCTAACTGCAAATTTGAAGGAG
>TRINITY_DN115340_c4_g4_i2 from sample A2 / Example unspliced isoform:GCAGATTTCACATGGTTGTTGTTGATGATGATGATTGTGTGCGAGGAGCCGTTGAGTAGTAATAAGTTTATATCACGGTTTTCTAATATTATTTTATACAGAGACTCGGCCGAATCTGCCGAAAGCCAGGCTGCATAGAACCTATGTTACCAAAGACCTGACCACGAGACTCGTTTCTCCTTCTTGTTCACGTTCCTGAC
AGgtcgttcacgtttacgattcctggcaaccgtttctcattctgttctctttcccataactggaaacacggcatgcaagcgtttgcagataataatcatagttggtattgactagaacaaattacgctaacgggctttcttttacagGTGAGGTTGACAGAGTATTGAACTGTTCACCAGGGTTCATTTTGCCATGCCCC
AACCTAATGTTGTCAAAAAGGGATGAAGCTGGGTACAAGCCTCGGTGAATTTGGCAGAATAGATACCCGATACTCTTCAGACCTGACAACTAAGCCGAAGGAAGTCTGTGTTCTGCAGTGGAGCCTCCAATATTCTAGCAGTTTTTTCCAAGCAGTTTTCAATTTGAAGAACAAATTTATTCTTAAATTCATAGCAGAAT
TTGATTTGACCTACCTAAGTGACGCAGAGAAATTGTATCTATCTTTACAAAAGATCAAAAACATCAACAGAATGGATGAAGATTGAAAATATGACTGTACATAAAATTCGGATGCATGTGGAATCATCAGGCTGATAATTTTGAAGTACAACTACATTGCAAAGTGCAGAGCTAAGAACAGCCCAAAAGTTATACTACAC
AGAATGTAGAACACCTAGTGCAGTTTGTAGATATCATGTATTAGAACAGAAATAGGTAGACACACTGCACTCTATGAAGGCACGCATGAACGTAATGTTTCATATGACATTGTTGATGGCCATATCAAATTTGTAAGTCAATCATTGAACAACTATAATTCACTTATTTCCTGCTGGATACTAGATCGGGTAAAAAGCTC
TGACTCGTGTTTTGCCTCTTAGAAATATGCACTTCAGGCCATTAGCAGCACTGGACCTTTTCTAGAGAGATAATATGCCAAAATATTTCAGATATATGACGACCATTTCGTTTTGTAAAGTATCTATCTCCATCGCTATTGAAGTTCAAATTTTGGACTTAGTCACTTTTACAAGGTATCCCCTCCCCCGCCTAACTGCA
AATTTGAAGGAG
Intron 6 GTGAGTTTTC ... TCCAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.44 | 8 | 15 | 14 |
| A2 | 60 | 11 | 23 | 10 |
| A3 | 55.56 | 10 | 16 | 9 |
| A4 | 80.39 | 5 | 19 | 22 |
| A5 | 49.37 | 20 | 17 | 22 |
| A6 | 28.57 | 5 | 2 | 2 |
| A7 | 19.35 | 25 | 2 | 10 |
| A8 | 26.53 | 18 | 4 | 9 |
| A9 | 9.68 | 14 | 2 | 1 |
| A10 | 13.79 | 25 | 0 | 8 |
>TRINITY_DN128892_c4_g1_i2 from sample A1 / Example spliced isoformTGATGATTGTGTGCGAGGAGCCGTTGAATAGTAATAAGTTTATATCACGGTTTTCTAATATCATTTTATACAGAGACTCGGCCGAATCTGCCGAAAGCCAGTGAATATCTAGCCAAACAATTTGTTTTTTTGGATAGAATACTTAATCATACGTCTTCCAAATTTTTTTTCATCACTATTGGAGAAAATTACAGCCTACT
TACTGAGAAGGAGGTAGCAGGCATTGCGGAAATGATATAATTTCAAGG
>TRINITY_DN128892_c4_g1_i6 from sample A1 / Example unspliced isoform:TGATGATTGTGTGCGAGGAGCCGTTGAATAGTAATAAGTTTATATCACGGTTTTCTAATATCATTTTATACAGAGACTCGGCCGAATCTGCCGAAAGCCAGgtgagttttcacgtttaaattgttattttgaaaatttcttgttctttaaaatgggcaatgaagaacaattaaatcgatcattgaatagaaattagaact
tctcaggagtcgttctttaactgcctacaatcaaggctctgtactgaagtctttacttccctcagggtttgaatgaccaaaattagggttactggcactagatgcgtattctttagtgatcagggtttgaatggccgaatgtaaccttactgccattttcacttttttgtttaggctgcatagaacctatgttagcaaag
acctgaccgcgagactcgtttctccttcttgttcacgttcctgacaggtcgttcacgtttacgattcctggcaaccgtttctcattctgttctctttcccataactggaaacacggcatgcaagcgtttgcagataataatcatagttggtattgactagaacaaattacgctaacgggctttcttttacaggtgaggtt
gacagagtattgaactgttcaccagggttcattttgccatgccccaacctaatgttgtcaaaaagggatgaagctgggtacaagcctcggtgaatttggcagaatagatacccgatactcttcagacctgacaactaagccgaaggaagtctgtgttctgcagtggagcctccaatattctagcagttttttccaagcag
ttttcaatttgaagaacaaatttattcttaaattcatagcagaatttgatttgacctacctaagtgacgcagagaaattgtatctatctttacaaaagatcaaaaacatcaacagaatggatgaagattgaaaatatgactgtacataaaattcggatgcatgtggaatcatcaggctgataattttgaagtacaactac
attgcaaagtgcagagctaagaacagcccaaaagttatactacacagaatgtagaacacctagtgcagtttgtagatatcatgtattagaacagaaataggtagacacactgcactctatgaaggcacgcatgaacgtaatgtttcatatgacattgttgatggccatatcaaatttgtaagtcaatcattgaacaacta
taattcacttatttcctgctggatactagatcgggtaaaaagctctgactcgtgttttgcctcttagaaatatgcacttcaggccattagcagcactggaccttttctagagagataatatgccaaaatatttcagatatatgacgaccatttcgttttgtaaagtatctatctccatcgctattgaagttcaagttttg
gacttaggcacttttacaaggtatcccctcccccgcctaactgcaaatttgaaggagattttcataagaattgaattttacttgaaaagtgaatttgatgttggtgcctatcatgttggcaacatttctgctgccgacttaatacttctaattttttgtgtaaaaagcatattttcattgccatcaaaatacaaacttta
atcttcattgagtcctcttccctcctttttcttcctcaatccaagttgaacttcatataattttttaacaatgttgattattcaaatttaggtgactgttatagaaggcccagtagttgggtgcatatattctgcaaatgtagctttctgctcacaagctacctttttggatggcacattttgcagaatttccgttggat
tggttctatatcatacagccttttataggaatatcactataatttgattttgtgctgggcaggcttagggttcaaaatgtaaatagcttaaaatgtgttaaagatataactttaagtgattctatacgtcttcaaatatgttaaaacataaaagatagcttaatatcagataaaagaaaggggatcttcatgggaggaag
gagccagattggatactaattggtgagttgtgcccacataacagcaactacctcacacatttttcgggatttatagagctcacatgtgagacagtaccaagaagaaattaacattaaatttacttgatttcatattgcacagtatcatatatctatagtatataaatttgtttttgaatttggatgctgaggataaggat
agatttccagctcaaaatagatcaagctagatggccaaatcttctctcaaatagcctaccctatctccacttaaccctactactagtatcagcaaaattgggtgcccatctaaatgcctaagaatgcttggtattttggaattgtttttgttgctttccattgaacatatttgcattggctataagctgtggaagaattc
caactacttgttaccgcctgaaaatgcaagtccaatttgcatttcagagacacggctccagcatatatgaactttggagcatagtatgagtcatttgagaggtggtaatgaagatctatgtgttctccttttctttcacatgttgagggatattcacataattcaaaacatgttttgttgctgagttaacatatttggaa
gcaaggttgcacatgtagcagacatttacctttcggtgcatgcatctacacattttcatgcatattcctccattggaaggtgcctttggggtgtcttcattgtgtgtcaaggaaaacactacatatttggaggcctttctcaccacttgggggtcatctcatgttgcacgaggcatttctacatatttgaaggcttacgg
aaacaatgaaggtttctagagagcacccatcctctcaggaagttcttggaggtttccatgacataatgaggggttaagtgcataaaaaaagtggaacgccatagctttggagttgcctcaccttaaaaacagtgatgtagaatcagacctaatctttagaaaaattctcctcttttgaagtggaacattcaaatgaagca
ccctagagtgtagggattgtgccaaatgtatttataaatagtggccatgataaaagccaaaagctcaagaatatagatttgaaggaccaagagaaagaaaacaaggacaattcaacgactagctaataatcttgtaaaagaattgacattcatgggtacagtgagtctcaaagtggggagatctataatgaccctatata
ggaagatcatcataaagacataagcaacactagaatatgttaacaatatatgcctagagtatgttaatgggtagcctaatatcatagtaaagaaaggagacctggatgagaggatgtagtcatattaaataatcagtagtgatggatgcacacctccaagtgggcttgcataatggcagccatacaacacctttattcag
cctccttacaatatagcaggggtacacacacatgttcacatgaactagtatatacgataaatggagaacttgcagggtcatcttctccatcagccaatgcttcctactcttcattttatgctaacttctccataattgcaacaatttcagccacaaaatataatgagtgtatttcttatgataatttgggcctttggaca
catttacatactagagaacttgcagggtcattttctccatcagccaatgcttccttctcttcattttatactaaattcctcttcataattgcaacaatatcagcaacaaaatatactgaatgtatttcttatggtaatttgggcctttcgacatatttacatactgaatctcttcttgtatttccaatgcagTGAATATC
TAGCCAAACAATTTGTTTTTTTGGATAGAATACTTAATCATACGTCTTCCAAATTTTTTTTCATCACTATTGGAGAAAATTACAGCCTACTTACTGAGAAGGAGGTAGCAGGCATTGCGGAAATGATATAATTTCAAGGAGAATGACATGGAGAAGAAAAGGAGACAGCAAAAGACATCTACAGAAAAGGGATCATCAGA
CCAGGCTGGTGGGCCTGAC