NA ----> NA

Intron 1 GTTGGAATTC ... TACAATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	11	1
A2	91.67	0.3	3	0
A3	83.06	2.7	13	3
A4	100	0	7	0
A5	100	0	8	0
A6	97.43	2.3	88	28
A7	91.97	7.7	85	19
A8	94.96	7.7	143	35.7
A9	89.52	10.3	87	34
A10	96.77	1	30	11

>TRINITY_DN35487_c0_g1_i3 from sample A8 / Example spliced isoform

TAAATCAAAAGGAAAGAAAATTATGGGGAAGAATTTGGCCACTCTATCTGATTCCAAAGAGAAGCATGCTAGTAAATCAAAAACTATATCTGAAGAGCTTGATAGTAAACTGGATGCGATTCAACAATCAGAGGTTCAAAAGGCATCATCAAAAAAAAAAAGAAAGCGAGGAGATGAGCTCCGCCTTCTACTGGAGACTG
AAAATTTGACTACCCCAAGTAACAGAAAGCATGAGCGCAAGAAAAAATATTTGGATGCTAAAAAGAAAAAGCATCAGAAAGCAAAGAATGGTGATCCTACAGATTACCCGCAGCATGAAACAATAAAATTTGGAGAGGTTGTAACTGCTCCACCAAAACTGGAGTTTCCTAAGAAGGCCAGTGCAGAAATAAAAATGCGC
CAAGACATCTCACAAGAAAGGCTTAGATTACAAGCTATTGAAAATTATAGGCATCGTAAAGGATGGACTTCTAGGCCTGGAAGCCATGTTCCACCTATTAACGCAACTGAGCTATTGTCAAGTACATAAAGAAAGTATATAGGCATTGGTTATCTGATTATGTTGATGCACTGAATGTAATGGTGACTAGAACTATTGGG
AGTGACGAGATGAAGTGTGCAATGGAATTAACCCTTCAGGCCTATTAAAATCACAGTGGCATATGTCTTGTTGGAGATTTTGTTCCACACGAATACGACTACCATTCTTTAATCCATTCTTCTTTTAGTTGAAGTCAAATTGTTCATAGTTGATTGATATATAGCCA

>TRINITY_DN35487_c0_g1_i1 from sample A8 / Example unspliced isoform:

CAAAGGGCTGCAACAAATAGTCATGCTTTGTTTTGAGTTGTTGAGGAAAAGTTCCAGTTCTATCGATCAAACAACCCGGCTGTAATTCTGAGTACTTAGCGAAGTTCCTTAAGAGCTTTGGCTGTAATTCTGAGTACTTGCGAAGTTCCTTAAGAGCTTTGGCTGTAATTCTGAGTACTCGCGAAGTTCCTGAAGAGCTT
TGGCTGTAATTGCGAAGTTCCTTAAGAGCTCTGAAGGGTATTCGGAGTTTTCATCAGCGCAACTAATAATGGGGTGCAAGGGCAAGCGAAGAAGAGAAAAGAATTACTTAGCAGCACACGGCGGATTCACTCTGGCTCCTCCACCAACTGCCAAGGATATGGAGGCCATTCCCTCCAAGCTTCGTCGCCTCATGGAGCTC
AAGAATTCGGCTCATTCAAAGAAATTGGTAAAAGAAAATGATGCTGGACATGGTGGAAAAAAGAGCGGAAGCTCTGAAAATAATAAATCAAAAGGAAAGAAAATTATGGGGAAGAATTTGGCCACTCTATCTGATTCCAAAGAGAAGCATGCTAGTAAATCAAAAACTATATCTGAAGAGCTTGATAGTAAACTGGATGC
GATTCAACAATCAGAGGTTCAAAAGGCATCATCAAAAAAAAAAAGAAAGCGAGGAGATGAGCTCCGCCTTCTACTGGAGACTGAAAATTTGACTACCCCAAGTAACAGAAAGCATGAGCGCAAGAAAAAATATTTGGATGCTAAAAAGAAAAAGCATCAGAAAGCAAAGAATGGTGATCCTACAGATTACCCGCAGCATG
AAACAATAAAATTTGGAGAGGTTGTAACTGCTCCACCAAAACTGGAGTTTCCTAAGAAGGCCAGTGCAGAAATAAAAATGCGCCAAGACATCTCACAAGAAAGGCTTAGATTACAAGCTATTGAAAATTATAGGCATCGTAAAGGATGGACTTCTAGGCCTGGAAGCCATGTTCCACCTATTAACGCAACTGAGCTATTG
TCAAGTACATAAAGAAAGTATATAGGCATTGGTTATCTGATTATGTTGATGCACTGAATGTAATGGTGACTAGAACTATTGGGAGTGACGAGATGAAGTGTGCAATGGAATTAACCCTTCAGgttggaattcccagagaatatattgcattgggaatttcattaagcattgtagtacaggaatttacattacagtacata
aatttgaaatacaggttcatgagtaacattgctagaatgtaaaacaattatgttgcatcgctacaagtttattggtatagctacattgtattggagaaattccaacacgttgaatactctttatattaatttttgaaagatgttcacgttaattttgatttacaatgcagGCCTATTAAAATCACAGTGGCATATGTCTT
GTTGGAGATTTTGTTCCACACGAATACGACTACCATTCTTTAATCCATTCTTCTTTTAGTTGAAGTCAAATTGTTCATAGTTGATTGATATATAGCCA