sp|Q3EBC2|ZDHC5_ARATH ----> Probable protein S-acyltransferase 17
Intron 1 GTTGTCCTTT ... GTGCATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 12 | 4 | 2 |
| A2 | 24.24 | 25 | 11 | 5 |
| A3 | 30.77 | 18 | 9 | 7 |
| A4 | 29.82 | 20 | 14 | 3 |
| A5 | 11.11 | 8 | 1 | 1 |
| A6 | 21.15 | 41 | 14 | 8 |
| A7 | 23.53 | 52 | 24 | 8 |
| A8 | 18.87 | 43 | 13 | 7 |
| A9 | 24.14 | 44 | 21 | 7 |
| A10 | 26.58 | 29 | 14 | 7 |
>TRINITY_DN97512_c0_g1_i2 from sample A4 / Example spliced isoformCGCACCGCATGTCCCTATATTTCTATATTCTTCTTTTTTGGCACTTTTGATTTCGACATCTTTTCACACTAAGGAAGGCATGCCTGAAATTAAAAAATATTACATGGTCTCCCTTGACTGTGCGAAGGGAGTCGAGTTCGGACAAGTTCTCCTAACAGCGGGTTGAATTTCATGGATTCGGAGCAGCGAGTGAAAATAGC
GGAGGGAAGCACGGAAAATTGAGAAAGAACGAAGAAGAAAAAATAATAATGGCTGCCCAGTGGGTACTTGTATTACATGGCTGCTTAACAGCTTTAGTAGTAGTTGCATTTCTTTGTGGACAATGGCCCATTTTTGAAGGCACCTTTGTGCAGAAGATCAACTATTTCATCACTGTTGGAGCCTACGATCTTCTCCTAAG
AGCAGCTATAGTTATTTGTGGATCAAAGGGTAGAAACGTGATTTTATCAGTCGAGCACTACTGTTGTGACCGTCCAAACCCAATACTGCAGATTCTGTACTTAGCAACCATTGGAGTGATTTACTATTTTGCCTTGAAGTCTTCGTCAAGCTATATTCCTGGTTACTATGTCCCAGGAATACATTGGTATACAAGCATAG
TTGCAGGGCTTGTGGGGATTATCCTTTTCATTCTTACCAGTTTTTCTGATCCAGGTACCATCAATTCTGAGAATGTTTCAAGATACATCTCAGCATACCCTTATGATGGTATCATATATTTCGAAAAACAATGTACGACATGCAACATTCCAAGACCTGCAAGATCCAAGCATTGCAGCATCTGTGATCGCTGTGTTGCA
CGCTTTGACCATCATTGTGGGTGGATGAACAATTGCATCGGAGAGAAGAATCTCCGGTACTTCTTGGCATTTTTACTTTGGCATTTTTTCCTTTGCTTATATGGAGTGGTTATCCTTGGTGCAATTCTAGCGGGTGAATTGAAGGAACGAAGGGTATTTCGTATTTTAACTGTTTACTATGGTATTGAAAATTCATTTTC
CAAATTGACTCCCCACATTGTACAGTGGTTTTTAAACGCCTACAATACACAAGTACTTTTAATATTGTTCATGGCAGTGACTTCCTTACTGCTAGCAGGGTTCTTTGGTTATCATGTTCACCTTGTTATTACTAACACCACCACCAATGAGACGTTCAAGTGGGACAGCTACAAAAAGTGGCAGCTTAGTCTAACTCAAG
TCAAAGCTGCATCTGAATCACTGAAGCATTCTGCTGAACTTGTCAATGCTGGGAAGCAAAAGAGACCTGACGCAAACACCCATGACTCGAAATGTAATTTGTTCAATTGTTACCTCAATTTGAAGGCATTATTTCCAAGGTGGCAAAGTGAAAAGCAGGTTTTTGTCCAGAACAATGTTTATGATAGGGGAGTGATCCAT
AACATCAGTGAAGCTATATATCCATTATCATGCAGAAAATATTTTTCTTTGACAAAATCAGATTAGTCTTTCTCCATTTAACCTGTATCTTGTATGTGTTCTTTATTATCATCTAAAAGCTTGCGGAAAGACTGCCCTGCTGCTATTACTTATCAGCAAAAGGATAGTGTATTGTTTCTGAACTTTACAGAAAAATAACT
TGCATAGAATAGGTGGCTCACAAAAGCCTGGACTACAAGCAGCGTGCAGGAGTGTTTGAGATCCAATAAGGCAAAGTCATTACTGGACATTTGTAATTATAAGAAGATTTGACGTTAGTCACAATGTAATGCATTGACGATGTGAAGGAAAAACCATGGGACCTTACAAGTAACTTAAACACCTTTTGTAGCTCTTGTAA
AATAACTACTGGTCTTCTATTGAGAAACTGTTGCCGGGTTTTTTTGTTTTTGTTCTTAACATTGGTATTGCCAGGGCTCTATCAAGTGATCATTTCATTGAATTTAATTGTTTTGAATAATTGTTTCC
>TRINITY_DN97512_c0_g1_i1 from sample A4 / Example unspliced isoform:CGCACCGCATGTCCCTATATTTCTATATTCTTCTTTTTTGGCACTTTTGATTTCGACATCTTTTCACACTAAGGAAGGCATGCCTGAAATTAAAAAATATTACATGGTCTCCCTTGACTGTGCGAAGGGAGTCGAGTTCGGACAAGTTCTCCTAACAGCGGGTTGAATTTCATGGATTCGGAGCAGCGAGTGAAAATAGC
GGAGGGAAGCACGGAAAATTGAGAAAGAACGAAGAAGAAAAAATAATAATGGCTGCCCAGTGGGTACTTGTATTACATGGCTGCTTAACAGCTTTAGTAGTAGTTGCATTTCTTTGTGGACAATGGCCCATTTTTGAAGGCACCTTTGTGCAGAAGATCAACTATTTCATCACTGTTGGAGCCTACGATCTTCTCCTAAG
AGCAGCTATAGTTATTTGTGGATCAAAGGGTAGAAACGTGATTTTATCAGTCGAGCACTACTGTTGTGACCGTCCAAACCCAATACTGCAGATTCTGTACTTAGCAACCATTGGAGTGATTTACTATTTTGCCTTGAAGTCTTCGTCAAGCTATATTCCTGGTTACTATGTCCCAGGAATACATTGGTATACAAGCATAG
TTGCAGGGCTTGTGGGGATTATCCTTTTCATTCTTACCAGTTTTTCTGATCCAGGTACCATCAATTCTGAGAATGTTTCAAGATACATCTCAGCATACCCTTATGATGGTATCATATATTTCGAAAAACAATGTACGACATGCAACATTCCAAGgttgtcctttcctacctgtgtgctagcattgactagtaaatttaaa
aactgctaatcctgtttttagactattgcaacttatctggcttctactagcttattgcttgtcttgttggtgcattcagACCTGCAAGATCCAAGCATTGCAGCATCTGTGATCGCTGTGTTGCACGCTTTGACCATCATTGTGGGTGGATGAACAATTGCATCGGAGAGAAGAATCTCCGGTACTTCTTGGCATTTTTA
CTTTGGCATTTTTTCCTTTGCTTATATGGAGTGGTTATCCTTGGTGCAATTCTAGCGGGTGAATTGAAGGAACGAAGGGTATTTCGTATTTTAACTGTTTACTATGGTATTGAAAATTCATTTTCCAAATTGACTCCCCACATTGTACAGTGGTTTTTAAACGCCTACAATACACAAGTACTTTTAATATTGTTCATGGC
AGTGACTTCCTTACTGCTAGCAGGGTTCTTTGGTTATCATGTTCACCTTGTTATTACTAACACCACCACCAATGAGACGTTCAAGTGGGACAGCTACAAAAAGTGGCAGCTTAGTCTAACTCAAGTCAAAGCTGCATCTGAATCACTGAAGCATTCTGCTGAACTTGTCAATGCTGGGAAGCAAAAGAGACCTGACGCAA
ACACCCATGACTCGAAATGTAATTTGTTCAATTGTTACCTCAATTTGAAGGCATTATTTCCAAGGTGGCAAAGTGAAAAGCAGGTTTTTGTCCAGAACAATGTTTATGATAGGGGAGTGATCCATAACATCAGTGAAGCTATATATCCATTATCATGCAGAAAATATTTTTCTTTGACAAAATCAGATTAGTCTTTCTCC
ATTTAACCTGTATCTTGTATGTGTTCTTTATTATCATCTAAAAGCTTGCGGAAAGACTGCCCTGCTGCTATTACTTATCAGCAAAAGGATAGTGTATTGTTTCTGAACTTTACAGAAAAATAACTTGCATAGAATAGGTGGCTCACAAAAGCCTGGACTACAAGCAGCGTGCAGGAGTGTTTGAGATCCAATAAGGCAAA
GTCATTACTGGACATTTGTAATTATAAGAAGATTTGACGTTAGTCACAATGTAATGCATTGACGATGTGAAGGAAAAACCATGGGACCTTACAAGTAACTTAAACACCTTTTGTAGCTCTTGTAAAATAACTACTGGTCTTCTATTGAGAAACTGTTGCCGGGTTTTTTTGTTTTTGTTCTTAACATTGGTATTGCCAGG
GCTCTATCAAGTGATCATTTCATTGAATTTAATTGTTTTGAATAATTGTTTCC
Intron 2 GTACCATCAA ... ACATTCCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.05 | 13 | 46 | 12 |
| A2 | 81.08 | 7 | 35 | 25 |
| A3 | 67.74 | 10 | 24 | 18 |
| A4 | 66.29 | 15 | 39 | 20 |
| A5 | 92.59 | 1 | 17 | 8 |
| A6 | 82.76 | 10 | 55 | 41 |
| A7 | 71.43 | 23 | 63 | 52 |
| A8 | 78.57 | 12 | 45 | 43 |
| A9 | 77.78 | 16 | 68 | 44 |
| A10 | 73.47 | 13 | 43 | 29 |
>TRINITY_DN101197_c0_g1_i4 from sample A2 / Example spliced isoformGCACTTTTGATTTCGACATCTTTTCACACTAAGGAAGGCATGCCTGAAATTAAAAAATATTACATGGTCTCCCTTGACTGTGCGAAGGGAGTCGAGTTCGGACAAGTTCTCCTAACAGCGGGTTGAATTTCATGGATTCGGAGCAGCGAGTGAAAATAGCGGAGGGAAGCACGGAAAATTGAGAAAGAACGAAGAAGAAA
AAATAATAATGGCTGCCCAGTGGGTACTTGTATTACATGGCTGCTTAACAGCTTTAGTAGTAGTTGCATTTCTTTGTGGACAATGGCCCATTTTTGAAGGCACCTTTGTGCAGAAGATCAACTATTTCATCACTGTTGGAGCCTACGATCTTCTCCTAAGAGCAGCTATAGTTATTTGTGGATCAAAGGGTAGAAACGTG
ATTTTATCAGTCGAGCACTACTGTTGTGACCGTCCAAACCCAATACTGCAGATTCTGTACTTAGCAACCATTGGAGTGATTTACTATTTTGCCTTGAAGTCTTCGTCAAGCTATATTCCTGGTTACTATGTCCCAGGAATACATTGTGTTGCTTTTGCAGGTATACAAGCATAGTTGCAGGGCTTGTGGGGATTATCCTT
TTCATTCTTACCAGTTTTTCTGATCCAGACCTGCAAGATCCAAGCATTGCAGCATCTGTGATCGCTGTGTTGCACGCTTTGACCATCATTGTGGGTGGATGAACAATTGCATCGGAGAGAAGAATCTCCGGTACTTCTTGGCATTTTTACTTTGGCATTTTTTCCTTTGCTTATATGGAGTGGTTATCCTTGGTGCAATT
CTAGCGGGTGAATTGAAGGAACGAAGGGTATTTCGTATTTTAACTGTTTACTATGGTATTGAAAATTCATTTTCCAAATTGACTCCCCACATTGTACAGTGGTTTTTAAACGCCTACAATACACAAGTACTTTTAATATTGTTCATGGCAGTGACTTCCTTACTGCTAGCAGGGTTCTTTGGTTATCATGTTCACCTTGT
TATTACTAACACCACCACCAATGAGACGTTCAAGTGGGACAGCTACAAAAAGTGGCAGCTTAGTCTAACTCAAGTCAAAGCTGCATCTGAATCACTGAAGCATTCTGCTGAACTTGTCAATGCTGGGAAGCAAAAGAGACCTGACGCAAACACCCATGACTCGAAATGTAATTTGTTCAATTGTTACCTCAATTTGAAGG
CATTATTTCCAAGGTGGCAAAGTGAAAAGCAGGTTTTTGTCCAGAACAATGTTTATGATAGGGGAGTGATCCATAACATCAGTGAAGCTATATATCCATTATCATGCAGAAAATATTTTTCTTTGACAAAATCAGATTAGTCTTTCTCCATTTAACCTGTATCTTGTATGTGTTCTTTATTATCATCTAAAAGCTTGCGG
AAAGACTGCCCTGCTGCTATTACTTATCAGCAAAAGGATAGTGTATTGTTTCTGAACTTTACAGAAAAATAACTTGCATAGAATAGGTGGCTCACAAAAGCCTGGACTACAAGCAGCGTGCAGGAGTGTTTGAGATCCAATAAGGCAAAGTCATTACTGGACATTTGTAATTATAAGAAGATTTGACGTTAGTCACAATG
TAATGCATTGACGATGTGAAGGAAAAACCATGGGACCTTACAAGTAACTTAAACACCTTTTGTAGCTCTTGTAAAATAACTACTGGTCTTCTATTGAGAAACTGTTGCCGGGTTTTTTTGTTTTTGTTCTTAACATTGGTATTGCCAGGGCTCTATCAAGTGATCATTTCATTGAATTTAATTGTTTTGAATAATTGTTT
CCCAATACATGGCCTTTAGAGTTATGTGTAATTTGAGAAGGCAATCTCACTCTCAGTATTCAGATTCTCTTGCAATAAAAATTAAAAGGGCTTGCAATTGCACCC
>TRINITY_DN101197_c0_g1_i3 from sample A2 / Example unspliced isoform:GCACTTTTGATTTCGACATCTTTTCACACTAAGGAAGGCATGCCTGAAATTAAAAAATATTACATGGTCTCCCTTGACTGTGCGAAGGGAGTCGAGTTCGGACAAGTTCTCCTAACAGCGGGTTGAATTTCATGGATTCGGAGCAGCGAGTGAAAATAGCGGAGGGAAGCACGGAAAATTGAGAAAGAACGAAGAAGAAA
AAATAATAATGGCTGCCCAGTGGGTACTTGTATTACATGGCTGCTTAACAGCTTTAGTAGTAGTTGCATTTCTTTGTGGACAATGGCCCATTTTTGAAGGCACCTTTGTGCAGAAGATCAACTATTTCATCACTGTTGGAGCCTACGATCTTCTCCTAAGAGCAGCTATAGTTATTTGTGGATCAAAGGGTAGAAACGTG
ATTTTATCAGTCGAGCACTACTGTTGTGACCGTCCAAACCCAATACTGCAGATTCTGTACTTAGCAACCATTGGAGTGATTTACTATTTTGCCTTGAAGTCTTCGTCAAGCTATATTCCTGGTTACTATGTCCCAGGAATACATTGGTATACAAGCATAGTTGCAGGGCTTGTGGGGATTATCCTTTTCATTCTTACCAG
TTTTTCTGATCCAGgtaccatcaattctgagaatgtttcaagatacatctcagcatacccttatgatggtatcatatatttcgaaaaacaatgtacgacatgcaacattccaagACCTGCAAGATCCAAGCATTGCAGCATCTGTGATCGCTGTGTTGCACGCTTTGACCATCATTGTGGGTGGATGAACAATTGCATCG
GAGAGAAGAATCTCCGGTACTTCTTGGCATTTTTACTTTGGCATTTTTTCCTTTGCTTATATGGAGTGGTTATCCTTGGTGCAATTCTAGCGGGTGAATTGAAGGAACGAAGGGTATTTCGTATTTTAACTGGTACAGAAAATTATGTGGAGGTTTATTTGAAGCCTTCACGCCATATTCATGCC
Intron 3 GTAATATTGT ... CTTTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.11 | 28 | 10 | 13 |
| A2 | 20 | 24 | 11 | 1 |
| A3 | 23.29 | 28 | 6 | 11 |
| A4 | 25 | 24 | 9 | 7 |
| A5 | 12 | 11 | 1 | 2 |
| A6 | 19.37 | 77 | 20 | 17 |
| A7 | 20.99 | 96 | 25 | 26 |
| A8 | 19.3 | 92 | 24 | 20 |
| A9 | 22.37 | 85 | 20 | 29 |
| A10 | 23.01 | 92 | 32 | 23 |
>TRINITY_DN113789_c0_g1_i3 from sample A1 / Example spliced isoformGCATGTCCCTATATTTCTATATTCTTCTTTTTTGGCACTTTTGATTTCGACATCTTTTCACACTAAGGAAGGCATGCCTGAAATTAAAAAATATTACATGGTCTCCCTTGACTGTGCGAAGGGAGTCGAGTTCGGACAAGTTCTCCTAACAGCGGGTTGAATTTCATGGATTCGGAGCAGCGAGTGAAAATAGCGGAGGG
AAGCACGGAAAATTGAGAAAGAACGAAGAAGAAAAAATAATAATGGCTGCCCAGTGGGTACTTGTATTACATGGCTGCTTAACAGCTTTAGTAGTAGTTGCATTTCTTTGTGGACAATGGCCCATTTTTGAAGGCACCTTTGTGCAGAAGATCAACTATTTCATCACTGTTGGAGCCTACGATCTTCTCCTAAGAGCAGC
TATAGTTATTTGTGGATCAAAGGGTAGAAACGTGATTTTATCAGTCGAGCACTACTGTTGTGACCGTCCAAACCCAATACTGCAGATTCTGTACTTAGCAACCATTGGAGTGATTTACTATTTTGCCTTGAAGTCTTCGTCAAGCTATATTCCTGGTTACTATGTCCCAGGAATACATTGGTATACAAGCATAGTTGCAG
GGCTTGTGGGGATTATCCTTTTCATTCTTACCAGTTTTTCTGATCCAGGTACCATCAATTCTGAGAATGTTTCAAGATACATCTCAGCATACCCTTATGATGGTATCATATATTTCGAAAAACAATGTACGACATGCAACATTCCAAGACCTGCAAGATCCAAGCATTGCAGCATCTGTGATCGCTGTGTTGCACGCTTT
GACCATCATTGTGGGTGGATGAACAATTGCATCGGAGAGAAGAATCTCCGGTACTTCTTGGCATTTTTACTTTGGCATTTTTTCCTTTGCTTATATGGAGTGGTTATCCTTGGTGCAATTCTAGCGGGTGAATTGAAGGAACGAAGGGTATTTCGTATTTTAACTGTTTACTATGGTATTGAAAATTCATTTTCCAAATT
GACTCCCCACATTGTACAGTGGTTTTTAAACGCCTACAATACACAAGTACTTTTAATATTGTTCATGGCAGTGACTTCCTTACTGCTAGCAGGGTTCTTTGGTTATCATGTTCACCTTGTTATTACTAACACCACCACCAATGAGACGTTCAAGTGGGACAGCTACAAAAAGTGGCAGCTTAGTCTAACTCAAGTCAAAG
CTGCATCTGAATCACTGAAGCATTCTGCTGAACTTGTCAATGCTGGGAAGCAAAAGAGACCTGACGCAAACACCCATGACTCGAAATGTAATTTGTTCAATTGTTACCTCAATTTGAAGGCATTATTTCCAAGGTGGCAAAGTGAAAAGCAGGTTTTTGTCCAGAACAATGTTTATGATAGGGGAGTGATCCATAACATC
AGTGAAGCTATATATCCATTATCATGCAGAAAATATTTTTCTTTGACAAAATCAGATTAGTCTTTCTCCATTTAACCTGTATCTTGTATGTGTTCTTTATTATCATCTAAAAGCTTGCGGAAAGACTGCCCTGCTGCTATTACTTATCAGCAAAAGGATAGTGTATTGTTTCTGAACTTTACAGAAAAATAACTTGCATA
GAATAGGTGGCTCACAAAAGCCTGGACTACAAGCAGCGTGCAGGAGTGTTTGAGATCCAATAAGGCAAAGTCATTACTGGACATTTGTAATTATAAGAAGATTTGACGTTAGTCACAATGTAATGCATTGACGATGTGAAGGAAAAACCATGGGACCTTACAAGTAACTTAAACACCTTTTGTAGCTCTTGTAAAATAAC
TACTGGTCTTCTATTGAGAAACTGTTGCCGGGTTTTTTTGTTTTTGTTCTTAACATTGGTATTGCCAGGGCTCTATCAAGTGATCATTTCATTGAATTTAATTGTTTTGAATAATTGTTTCCCAATACATGGCCTTTAGAGTTATGTGTAATTTGAGAAGGCAATCTCACTCTCAGTATTCAGATTCTCTTGCAATAAAA
ATTAAAAGGGCTTGCAATTGCA
>TRINITY_DN113789_c0_g1_i4 from sample A1 / Example unspliced isoform:GCATGTCCCTATATTTCTATATTCTTCTTTTTTGGCACTTTTGATTTCGACATCTTTTCACACTAAGGAAGGCATGCCTGAAATTAAAAAATATTACATGGTCTCCCTTGACTGTGCGAAGGGAGTCGAGTTCGGACAAGTTCTCCTAACAGCGGGTTGAATTTCATGGATTCGGAGCAGCGAGTGAAAATAGCGGAGGG
AAGCACGGAAAATTGAGAAAGAACGAAGAAGAAAAAATAATAATGGCTGCCCAGTGGGTACTTGTATTACATGGCTGCTTAACAGCTTTAGTAGTAGTTGCATTTCTTTGTGGACAATGGCCCATTTTTGAAGGCACCTTTGTGCAGAAGATCAACTATTTCATCACTGTTGGAGCCTACGATCTTCTCCTAAGAGCAGC
TATAGTTATTTGTGGATCAAAGGGTAGAAACGTGATTTTATCAGTCGAGCACTACTGTTGTGACCGTCCAAACCCAATACTGCAGATTCTGTACTTAGCAACCATTGGAGTGATTTACTATTTTGCCTTGAAGTCTTCGTCAAGCTATATTCCTGGTACCATCAATTCTGAGAATGTTTCAAGATACATCTCAGCATACC
CTTATGATGGTATCATATATTTCGAAAAACAATGTACGACATGCAACATTCCAAGACCTGCAAGATCCAAGCATTGCAGCATCTGTGATCGCTGTGTTGCACGCTTTGACCATCATTAACAATTGCATCGGAGAGAAGAATCTCCGGTACTTCTTGGCATTTTTACTTTGGCATTTTTTCCTTTGCTTATATGGAGTGGT
TATCCTTGGTGCAATTCTAGCGGGTGAATTGAAGGAACGAAGGGTATTTCGTATTTTAACTGTTTACTATGGTATTGAAAATTCATTTTCCAAATTGACTCCCCACATTGTACAGgtaatattgtgttttcggtctagaatataatatggtccatcttccatgcagttatttaattatgctccgtgaggtgtgagggaga
gtttgagttttctttgactgatactctttctttatgcagTGGTTTTTAAACGCCTACAATACACAAGTACTTTTAATATTGTTCATGGCAGTGACTTCCTTACTGCTAGCAGGGTTCTTTGGTTATCATGTTCACCTTGTTATTACTAACACCACCACCAATGAGACGTTCAAGTGGGACAGCTACAAAAAGTGGCAGCT
TAGTCTAACTCAAGTCAAAGCTGCATCTGAATCACTGAAGCATTCTGCTGAACTTGTCAATGCTGGGAAGCAAAAGAGACCTGACGCAAACACCCATGACTCGAAATGTAATTTGTTCAATTGTTACCTCAATTTGAAGGCATTATTTCCAAGGTGGCAAAGTGAAAAGCAGGTTTTTGTCCAGAACAATGTTTATGATA
GGGGAGTGATCCATAACATCAGTGAAGCTATATATCCATTATCATGCAGAAAATATTTTTCTTTGACAAAATCAGATTAGTCTTTCTCCATTTAACCTGTATCTTGTATGTGTTCTTTATTATCATCTAAAAGCTTGCGGAAAGACTGCCCTGCTGCTATTACTTATCAGCAAAAGGATAGTGTATTGTTTCTGAACTTT
ACAGAAAAATAACTTGCATAGAATAGGTGGCTCACAAAAGCCTGGACTACAAGCAGCGTGCAGGAGTGTTTGAGATCCAATAAGGCAAAGTCATTACTGGACATTTGTAATTATAAGAAGATTTGACGTTAGTCACAATGTAATGCATTGACGATGTGAAGGAAAAACCATGGGACCTTACAAGTAACTTAAACACCTTT
TGTAGCTCTTGTAAAATAACTACTGGTCTTCTATTGAGAAACTGTTGCCGGGTTTTTTTGTTTTTGTTCTTAACATTGGTATTGCCAGGGCTCTATCAAGTGATCATTTCATTGAATTTAATTGTTTTGAATAATTGTTTCCCAATACATGGCCTTTAGAGTTATGTGTAATTTGAGAAGGCAATCTCACTCTCAGTATT
CAGATTCTCTTGCAATAAAAATTAAAAGGGCTTGCAATTGCA
Intron 4 GTTACTATGT ... TCTGATCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 84.47 | 8 | 41 | 46 |
| A2 | 69.64 | 17 | 43 | 35 |
| A3 | 72.5 | 11 | 34 | 24 |
| A4 | 78.49 | 10 | 34 | 39 |
| A5 | 75 | 4 | 7 | 17 |
| A6 | 75.19 | 16 | 42 | 55 |
| A7 | 74.23 | 21 | 58 | 63 |
| A8 | 73.74 | 13 | 28 | 45 |
| A9 | 75.86 | 21 | 64 | 68 |
| A10 | 84.75 | 9 | 57 | 43 |
>TRINITY_DN113789_c0_g1_i4 from sample A1 / Example spliced isoformGCATGTCCCTATATTTCTATATTCTTCTTTTTTGGCACTTTTGATTTCGACATCTTTTCACACTAAGGAAGGCATGCCTGAAATTAAAAAATATTACATGGTCTCCCTTGACTGTGCGAAGGGAGTCGAGTTCGGACAAGTTCTCCTAACAGCGGGTTGAATTTCATGGATTCGGAGCAGCGAGTGAAAATAGCGGAGGG
AAGCACGGAAAATTGAGAAAGAACGAAGAAGAAAAAATAATAATGGCTGCCCAGTGGGTACTTGTATTACATGGCTGCTTAACAGCTTTAGTAGTAGTTGCATTTCTTTGTGGACAATGGCCCATTTTTGAAGGCACCTTTGTGCAGAAGATCAACTATTTCATCACTGTTGGAGCCTACGATCTTCTCCTAAGAGCAGC
TATAGTTATTTGTGGATCAAAGGGTAGAAACGTGATTTTATCAGTCGAGCACTACTGTTGTGACCGTCCAAACCCAATACTGCAGATTCTGTACTTAGCAACCATTGGAGTGATTTACTATTTTGCCTTGAAGTCTTCGTCAAGCTATATTCCTGGTACCATCAATTCTGAGAATGTTTCAAGATACATCTCAGCATACC
CTTATGATGGTATCATATATTTCGAAAAACAATGTACGACATGCAACATTCCAAGACCTGCAAGATCCAAGCATTGCAGCATCTGTGATCGCTGTGTTGCACGCTTTGACCATCATTAACAATTGCATCGGAGAGAAGAATCTCCGGTACTTCTTGGCATTTTTACTTTGGCATTTTTTCCTTTGCTTATATGGAGTGGT
TATCCTTGGTGCAATTCTAGCGGGTGAATTGAAGGAACGAAGGGTATTTCGTATTTTAACTGTTTACTATGGTATTGAAAATTCATTTTCCAAATTGACTCCCCACATTGTACAGGTAATATTGTGTTTTCGGTCTAGAATATAATATGGTCCATCTTCCATGCAGTTATTTAATTATGCTCCGTGAGGTGTGAGGGAGA
GTTTGAGTTTTCTTTGACTGATACTCTTTCTTTATGCAGTGGTTTTTAAACGCCTACAATACACAAGTACTTTTAATATTGTTCATGGCAGTGACTTCCTTACTGCTAGCAGGGTTCTTTGGTTATCATGTTCACCTTGTTATTACTAACACCACCACCAATGAGACGTTCAAGTGGGACAGCTACAAAAAGTGGCAGCT
TAGTCTAACTCAAGTCAAAGCTGCATCTGAATCACTGAAGCATTCTGCTGAACTTGTCAATGCTGGGAAGCAAAAGAGACCTGACGCAAACACCCATGACTCGAAATGTAATTTGTTCAATTGTTACCTCAATTTGAAGGCATTATTTCCAAGGTGGCAAAGTGAAAAGCAGGTTTTTGTCCAGAACAATGTTTATGATA
GGGGAGTGATCCATAACATCAGTGAAGCTATATATCCATTATCATGCAGAAAATATTTTTCTTTGACAAAATCAGATTAGTCTTTCTCCATTTAACCTGTATCTTGTATGTGTTCTTTATTATCATCTAAAAGCTTGCGGAAAGACTGCCCTGCTGCTATTACTTATCAGCAAAAGGATAGTGTATTGTTTCTGAACTTT
ACAGAAAAATAACTTGCATAGAATAGGTGGCTCACAAAAGCCTGGACTACAAGCAGCGTGCAGGAGTGTTTGAGATCCAATAAGGCAAAGTCATTACTGGACATTTGTAATTATAAGAAGATTTGACGTTAGTCACAATGTAATGCATTGACGATGTGAAGGAAAAACCATGGGACCTTACAAGTAACTTAAACACCTTT
TGTAGCTCTTGTAAAATAACTACTGGTCTTCTATTGAGAAACTGTTGCCGGGTTTTTTTGTTTTTGTTCTTAACATTGGTATTGCCAGGGCTCTATCAAGTGATCATTTCATTGAATTTAATTGTTTTGAATAATTGTTTCCCAATACATGGCCTTTAGAGTTATGTGTAATTTGAGAAGGCAATCTCACTCTCAGTATT
CAGATTCTCTTGCAATAAAAATTAAAAGGGCTTGCAATTGCA
>TRINITY_DN113789_c0_g1_i3 from sample A1 / Example unspliced isoform:GCATGTCCCTATATTTCTATATTCTTCTTTTTTGGCACTTTTGATTTCGACATCTTTTCACACTAAGGAAGGCATGCCTGAAATTAAAAAATATTACATGGTCTCCCTTGACTGTGCGAAGGGAGTCGAGTTCGGACAAGTTCTCCTAACAGCGGGTTGAATTTCATGGATTCGGAGCAGCGAGTGAAAATAGCGGAGGG
AAGCACGGAAAATTGAGAAAGAACGAAGAAGAAAAAATAATAATGGCTGCCCAGTGGGTACTTGTATTACATGGCTGCTTAACAGCTTTAGTAGTAGTTGCATTTCTTTGTGGACAATGGCCCATTTTTGAAGGCACCTTTGTGCAGAAGATCAACTATTTCATCACTGTTGGAGCCTACGATCTTCTCCTAAGAGCAGC
TATAGTTATTTGTGGATCAAAGGGTAGAAACGTGATTTTATCAGTCGAGCACTACTGTTGTGACCGTCCAAACCCAATACTGCAGATTCTGTACTTAGCAACCATTGGAGTGATTTACTATTTTGCCTTGAAGTCTTCGTCAAGCTATATTCCTGgttactatgtcccaggaatacattggtatacaagcatagttgcag
ggcttgtggggattatccttttcattcttaccagtttttctgatccagGTACCATCAATTCTGAGAATGTTTCAAGATACATCTCAGCATACCCTTATGATGGTATCATATATTTCGAAAAACAATGTACGACATGCAACATTCCAAGACCTGCAAGATCCAAGCATTGCAGCATCTGTGATCGCTGTGTTGCACGCTTT
GACCATCATTGTGGGTGGATGAACAATTGCATCGGAGAGAAGAATCTCCGGTACTTCTTGGCATTTTTACTTTGGCATTTTTTCCTTTGCTTATATGGAGTGGTTATCCTTGGTGCAATTCTAGCGGGTGAATTGAAGGAACGAAGGGTATTTCGTATTTTAACTGTTTACTATGGTATTGAAAATTCATTTTCCAAATT
GACTCCCCACATTGTACAGTGGTTTTTAAACGCCTACAATACACAAGTACTTTTAATATTGTTCATGGCAGTGACTTCCTTACTGCTAGCAGGGTTCTTTGGTTATCATGTTCACCTTGTTATTACTAACACCACCACCAATGAGACGTTCAAGTGGGACAGCTACAAAAAGTGGCAGCTTAGTCTAACTCAAGTCAAAG
CTGCATCTGAATCACTGAAGCATTCTGCTGAACTTGTCAATGCTGGGAAGCAAAAGAGACCTGACGCAAACACCCATGACTCGAAATGTAATTTGTTCAATTGTTACCTCAATTTGAAGGCATTATTTCCAAGGTGGCAAAGTGAAAAGCAGGTTTTTGTCCAGAACAATGTTTATGATAGGGGAGTGATCCATAACATC
AGTGAAGCTATATATCCATTATCATGCAGAAAATATTTTTCTTTGACAAAATCAGATTAGTCTTTCTCCATTTAACCTGTATCTTGTATGTGTTCTTTATTATCATCTAAAAGCTTGCGGAAAGACTGCCCTGCTGCTATTACTTATCAGCAAAAGGATAGTGTATTGTTTCTGAACTTTACAGAAAAATAACTTGCATA
GAATAGGTGGCTCACAAAAGCCTGGACTACAAGCAGCGTGCAGGAGTGTTTGAGATCCAATAAGGCAAAGTCATTACTGGACATTTGTAATTATAAGAAGATTTGACGTTAGTCACAATGTAATGCATTGACGATGTGAAGGAAAAACCATGGGACCTTACAAGTAACTTAAACACCTTTTGTAGCTCTTGTAAAATAAC
TACTGGTCTTCTATTGAGAAACTGTTGCCGGGTTTTTTTGTTTTTGTTCTTAACATTGGTATTGCCAGGGCTCTATCAAGTGATCATTTCATTGAATTTAATTGTTTTGAATAATTGTTTCCCAATACATGGCCTTTAGAGTTATGTGTAATTTGAGAAGGCAATCTCACTCTCAGTATTCAGATTCTCTTGCAATAAAA
ATTAAAAGGGCTTGCAATTGCA