NA ----> NA

Intron 1 GTTTCTTTAG ... TGGCACCGAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	66.52	37	61	86
A2	65.85	35	47	88
A3	66.92	43	76	98
A4	82.73	12	39	76
A5	72.82	14	28	47
A6	80.65	134	325	792
A7	68.04	397	532	1158
A8	70.1	467	693	1497
A9	73.2	307	507	1170
A10	65.79	416	591	1009

>TRINITY_DN46790_c4_g2_i4 from sample A8 / Example spliced isoform

CGAATTTGAAGTTTGATGTCTATATAGTCTCTCTGTCTGTAACGATTTGATGAAATGTGCTTTGTTGGCAGGATTGTTTGTTTGTTTTTGCGGTGCTGTTAACGGGGTGTCGTTGGTGTTGTGGTTTTCACGCAGGATTGACAGTTAAAGTGAAGGAAATATTTGCTGTTTGGAGAGTTGGTGGTCTGAACCGCCGAGGC
TTCGTGGATTGACAGTCTTTTCGCTAGCTGTTTGGGTTACAGCTTGGCTCTTTGAGATCCTTTGGAGCCAAAGGGAAGGCTCTAGTGGAAAAAAGTGGTGGACATGCATTCAAATAATTTGATGTTGAGTTGAGTCCGAGG

>TRINITY_DN46790_c4_g2_i12 from sample A8 / Example unspliced isoform:

CGAATTTGAAGTTTGATGTCTATATAGTCTCTCTGTCTGTAACGATTTGATGAAATGTGCTTTGTTGGCAGGATTGTTTGTTTGTTTTTGCGGTGCTGTTAACGGGGTGTCGTTGGTGTTGTGGTTTTCACGCAGGATTGACAGTTAAAGTGAAGGAAATATTTGTTGTTTGGAGAGTTGGTGGTCTGAACCGCCGAGGC
TTCGTGGATTGACAGTCTTTTCGCTAGCTGTTTGGGTTACAGgtttctttagattccaactttttagatgatttaccatctcttgggagagaccatttggaaattgagggtgaagatgtgggttctttaatgaatgctgatattggcaccgagCTTGGCTCTTTGAGATCCTTTGGAGCCAAAGGGAAGGCTCTAGTGGA
AAAAAGTGGTGGACATGCATTCAAA

Intron 2 GTATTTTAAT ... GTCTATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	79.2	19	52.5	72.5
A2	71.4	21	30	52.5
A3	63.59	35	31.5	62.5
A4	51.3	30	18.5	32.5
A5	67.91	14	18.5	30
A6	51.43	235	95	263
A7	51.53	277	132.5	309
A8	56.58	411	211.5	551.5
A9	43.35	314	113	261.5
A10	45.33	251	82	223.5

>TRINITY_DN46790_c4_g2_i9 from sample A8 / Example spliced isoform

AATGCACATAATTTTCGAGTCTCGAGTAGTCAAAATGAAGAGTGTTTTGGAGAGGTTTCTTTAGATTCCAACTTTTTAGATGATTTACCATCTCTTGGGAGAGACCATTTGGAAATTGAGGGTGAAGATGTGGGTTCTTTAATGAATGCTGATATTGGCACCGAGCTTGGCTCTTTGAGATCCTTTGGAGCCAAAGGGAA
GGCTCTAGTGGAAAAAAGTGGTGGACATGCATTCAAA

>TRINITY_DN46790_c4_g2_i7 from sample A8 / Example unspliced isoform:

AATGCACATAATTTTCGAGTCTCGAGTAGTCAAAATGAAGAGTGTTTTGGAGAGgtattttaattataatatttatgattgaacttgattttttttgtttgtttgaattttaataaatatcaatgtatcttattgttaatttgacttatctatgcagGTTTCTTTAGATTCCAACTTTTTAGATGATTTACCATCTCTTG
TGAGCTAATGATTTTAATTTTTTTGTTTTGGTTTTAAGTTAATTGCTG