sp|O82239|RFI2_ARATH ----> E3 ubiquitin-protein ligase RFI2
Intron 1 GTAAGTTTTA ... TGCTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.91 | 70.8 | 1.8 | 12 |
| A2 | 21.57 | 48 | 4 | 12 |
| A3 | 26.36 | 72 | 2 | 22 |
| A4 | 23.88 | 57.3 | 0 | 17 |
| A5 | 10.23 | 33 | 2 | 3 |
| A6 | 21.86 | 256 | 1 | 65 |
| A7 | 23.28 | 144.8 | 2 | 40 |
| A8 | 18.58 | 106.3 | 1 | 21.3 |
| A9 | 20.98 | 177.8 | 1 | 43 |
| A10 | 26.34 | 139.5 | 3 | 46 |
>TRINITY_DN120088_c4_g2_i10 from sample A1 / Example spliced isoformAGTGGTAGGGTTTATAGATATATCTTAGAAGAGGGAGTGGTAGGGTTTATAGATATATCTTAGAAGAGGGAGTGGTAGGGTTTATAGATATATTTTAGATGTATCCATTTCCGTGTTTCTTTGAATCTCTAAAATCTGTCTTGCATACCTTTCATACTGTGACCTTTTATCTTAATTCTGATAACTTGATAATGAAGTTG
CTTGTGACTGGTTGAGGCAAGATATTGTCACTTGTTTGACTGCATCAACTTCTACTTAAAACCTGGCTCACATTTCACAGTGGTGCAAAAGCTTGTAAGTTGTAAATCATCATTGAATTCTGAACAACAAAATGTGCATGCATATAAATTCAAAGAGGTTGTGGCTGTTTCTTGTTAATTTTTTTTTGCTGACAGTGGTT
CATTTGATTGTCCTCAATTGAAATTTGTCTTTTTCCTTCTGCAGGGACCCTGAGCCTCCATCAGGTGCTTATCCAGATCTGATAGTAAATGTCTTGTATGGTGAGCATCCAAGTGCGTCAAATGGGGCTCATGTATGCCCTTACCTTGCTGTTCATGGTCTTACTAGGGCAAGGCAAATGCCAGTCTCCATCAACAATGC
TGGGTCTTCTAACAATGTGGGGGATATAGGTCCTCATCACCGAAATGCAGCCTCAGCAATTGGAGAGGCATTTAGTTCCCATGCATTTCCTGCATCTGAAACAACACATCATCGTCATTGGCATTCTTCCAATACATTTCCTAGCAATAACAGTGTACCTAGTGCGGAGGATCCAGCTTTACCCGCGTTGCCTTCACATG
ATAGATTTGCAATACCCAGGACAGACTCTGAACGTCTACACAGAACTGGATCTCCCATGGCTTCTAGTTACGGTGCCAATGGGTTCTATCCCCGTACAGTCAATGCAAGACCTCCTCCACCAATGACTAGTGATTTTGTTCATTCTCAAAATCATATTCATGGGCATGGAGGGGGGCAGCTTTATCATCCACCTGCTTCT
TCTATGCATAGTGGTTTGATAAGCCACAATCGGAGGTCAAGGTCAAGGGATACCCTGGTTCCATCAAGGAGAGTCATTCAAAATATTCCTGCGGAGCAAGCTAGAATGCAAGGAGCCTCAGCCTATCCAATGAGCAGGAGTCAAGATGGAGACAACATGGGGTGGCATCAAAACAACCATTTTTATGGATTGCAGATAGA
AGGATTTCCTCCAGCTCCTTGGGTACCCCTTGATCACGATTCACAAAGGTGGGCTTGGTATCATCGTGGGCAGAACCCACAAAATGTGCCAACTGAACCTATAAATAGAAATTATTACCGTCACAGTTATTTTAGTGCAGAGGGAGTTGCACAGGGACGACCTGGCATTTCATTGGAAACACCTTATCAACGTCATGGTT
ATACAAGATTTCCCCCATCTTTTCCATGAAATTGAAGTACTTTATGTCTATGGCCACAAAGGATTAGGGAATAAAGAGTGCCATGTCAGCATACTATTTTATTATTTTTAAATCTCGTTTTCCTACATGATCATCTTTGTATATTTTTTTTCAGTCTGGGATTCAAATGAACGGCAATCATTTTTATCTTGGTTTGCTTT
GGAGGATATGCCTGCACTAAGTTCAAGAGCCTGGTAATTTCCAGTCTGGATTTTGTAAATTCTCACCTAGAAAAAATATTTCTTTTGTAGCACGAGGTGCACATTGAACCATAGATTAGATTTAAGCTCATGGTTTTATCTTGATACAAGACGATTTCATTTTGTGAATTCTAACCAATTAAATTGATACAGTTACTAGT
ATTGTATCTGTTACTGTTGAATGGCCTAAATGGCTGGCTTAAACGGTTTCTTGATAACTAAAAAAAA
>TRINITY_DN120088_c4_g2_i2 from sample A1 / Example unspliced isoform:AGTGGTAGGGTTTATAGATATATCTTAGAAGAGGGAGTGGTAGGGTTTATAGATATATCTTAGAAGAGGGAGTGGTAGGGTTTATAGATATATTTTAGATGTATCCATTTCCGTGTTTCTTTGAATCTCTAAAATCTGTCTTGCATACCTTTCATACTGTGACCTTTTATCTTAATTCTGATAACTTGATAATGAAGTTG
CTTGTGACTGGTTGAGGCAAGATATTGTCACTTGTTTGACTGCATCAACTTCTACTTAAAACCTGGCTCACATTTCACAGTGGTGCAAAAGCTTGTAAGTTGTAAATCATCATTGAATTCTGAACAACAAAATGTGCATGCATATAAATTCAAAGAGGTTGTGGCTGTTTCTTGTTAATTTTTTTTTGCTGACAGTGGTT
CATTTGATTGTCCTCAATTGAAATTTGTCTTTTTCCTTCTGCAGGGACCCTGAGCCTCCATCAGGTGCTTgtaagttttatttatttatctcaatccattaaattcatgcttgttagaatgaaaagtattatttgagctttttgttatgatcatgataagctggcatgcaaggagtaacagccatattgtgttggcaata
gttttcaaaccattgaccaagatctttgtttgctttgcagATCCAGATCTGATAGTAAATGTCTTGTATGGTGAGCATCCAAGTGCGTCAAATGGGGCTCATGTATGCCCTTACCTTGCTGTTCATGGTCTTACTAGGGCAAGGCAAATGCCAGTCTCCATCAACAATGCTGGGTCTTCTAACAATGTGGGGGATATAGG
TCCTCATCACCGAAATGCAGCCTCAGCAATTGGAGAGGCATTTAGTTCCCATGCATTTCCTGCATCTGAAACAACACATCATCGTCATTGGCATTCTTCCAATACATTTCCTAGCAATAACAGTGTACCTAGTGCGGAGGATCCAGCTTTACCCGCGTTGCCTTCACATGATAGATTTGCAATACCCAGGACAGACTCTG
AACGTCTACACAGAACTGGATCTCCCATGGCTTCTAGTTACGGTGCCAATGGGTTCTATCCCCGTACAGTCAATGCAAGACCTCCTCCACCAATGACTAGTGATTTTGTTCATTCTCAAAATCATATTCATGGGCATGGAGGGGGGCAGCTTTATCATCCACCTGCTTCTTCTATGCATAGTGGTTTGATAAGCCACAAT
CGGAGGTCAAGGTCAAGGGATACCCTGGTTCCATCAAGGAGAGTCATTCAAAATATTCCTGCGGAGCAAGCTAGAATGCAAGGAGCCTCAGCCTATCCAATGAGCAGGAGTCAAGATGGAGACAACATGGGGTGGCATCAAAACAACCATTTTTATGGATTGCAGATAGAAGGATTTCCTCCAGCTCCTTGGGTACCCCT
TGATCACGATTCACAAAGGTGGGCTTGGTATCATCGTGGGCAGAACCCACAAAATGTGCCAACTGAACCTATAAATAGAAATTATTACCGTCACAGTTATTTTAGTGCAGAGGGAGTTGCACAGGGACGACCTGGCATTTCATTGGAAACACCTTATCAACGTCATGGTTATACAAGATTTCCCCCATCTTTTCCATGAA
ATTGAAGTACTTTATGTCTATGGCCACAAAGGATTAGGGAATAAAGAGTGCCATGTCAGCATACTATTTTATTATTTTTAAATCTCGTTTTCCTACATGATCATCTTTGTATATTTTTTTTCAGTCTGGGATTCAAATGAACGGCAATCATTTTTATCTTGGTTTGCTTTGGAGGATATGCCTGCACTAAGTTCAAGAGC
CTGGTAATTTCCAGTCTGGATTTTGTAAATTCTCACCTAGAAAAAATATTTCTTTTGTAGCACGAGGTGCACATTGAACCATAGATTAGATTTAAGCTCATGGTTTTATCTTGATACAAGACGATTTCATTTTGTGAATTCTAACCAATTAAATTGATACAGTTACTAGTATTGTATCTGTTACTGTTGAATGGCCTAAA
TGGCTGGCTTAAACGGTTTCTTGATAACTAAAAAAAA
Intron 2 GTAATCGCGG ... TTAATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.45 | 82.3 | 127 | 155 |
| A2 | 78.93 | 35.8 | 156 | 110 |
| A3 | 65.23 | 85.4 | 140 | 177 |
| A4 | 64.83 | 75.1 | 153 | 121 |
| A5 | 76.8 | 28.6 | 109 | 77 |
| A6 | 74.1 | 128.2 | 403.9 | 324 |
| A7 | 76.4 | 98.4 | 323 | 309 |
| A8 | 76.86 | 40.9 | 135 | 135 |
| A9 | 72.92 | 90.9 | 238 | 248.6 |
| A10 | 78.68 | 70.1 | 303 | 208.8 |
>TRINITY_DN120088_c4_g2_i8 from sample A1 / Example spliced isoformTTTCGATCCGACGGCGTAGGACTCGCTAGTCGCATTTGTTATTCTCTTTCGTCTAACTGCAACGGGTTTTATGTACGCCACTCCTATCACGGAGAAAGGAGGATAACGCGACTCAGAATTGGCACTGGAATTCATTGATTTGCCCTCAAATTTTCGTCCAGCGGAACTTGAGATCATATCAGGGCCTGCGAAACGTTTCT
GGGATTTTTACCGGCTTTCTTTCCCGGGAAATCTGTCGAGAAGGGGAAAATCGATGGTGTTGAGGCGATGAAATAAGTTGCGGAAACGGTGCTTGAATTGCGGTTTCAAGAGAAGGGATCTGGGGAGCAATGGAGACGGGAAACAGAGATAAGCAGTCGCAGGGGGCATTTTTGTGTTCGGGTTCGATATCGTGTTCTGT
TTGTTTGGAGGCAGTCTCCGACAGAGGGGAGAGATCGATTGCCAAGCTCAAATGCGGGCATCATTTTCATTTAGATTGTATTGGGTCAGCATTCAATGCCAAGGGAGCAATGCAGTGCCCAAACTGCAGGCATGTAGAGCATGGTCAGTGGCTCTATGCCAATGGCTGCCGTCCATATGAAGAATTCACAGTTGAGGATC
TACCAAATGATGATTACCTATATGATCTTCATCATACTGAAATGCCATTTGGATTCCCATGGTGTCCATACCAAGGTTCTTATTCCCAATTATCAGTGTCTCTTGAGGACCCTGAGCCTCCATCAGGTGCTTATCCAGATCTGATAGTAAATGTCTTGTATGGTGAGCATCCAAGTGCGTCAAATGGGGCTCATGTATGC
CCTTACCTTGCTGTTCATGGTCTTACTAGGGCAAGGCAAATGCCAGTCTCCATCAACAATGCTGGGTCTTCTAACAATGTGGGGGATATAGGTCCTCATCACCGAAATGCAGCCTCAGCAATTGGAGAGGCATTTAGTTCCCATGCATTTCCTGCATCTGAAACAACACATCATCGTCATTGGCATTCTTCCAATACATT
TCCTAGCAATAACAGTGTACCTAGTGCGGAGGATCCAGCTTTACCCGCGTTGCCTTCACATGATAGATTTGCAATACCCAGGACAGACTCTGAACGTCTACACAGAACTGGATCTCCCATGGCTTCTAGTTACGGTGCCAATGGGTTCTATCCCCGTACAGTCAATGCAAGACCTCCTCCACCAATGACTAGTGATTTTG
TTCATTCTCAAAATCATATTCATGGGCATGGAGGGGGGCAGCTTTATCATCCACCTGCTTCTTCTATGCATAGTGGTTTGATAAGCCACAATCGGAGGTCAAGGTCAAGGGATACCCTGGTTCCATCAAGGAGAGTCATTCAAAATATTCCTGCGGAGCAAGCTAGAATGCAAGGAGCCTCAGCCTATCCAATGAGCAGG
AGTCAAGATGGAGACAACATGGGGTGGCATCAAAACAACCATTTTTATGGATTGCAGATAGAAGGATTTCCTCCAGCTCCTTGGGTACCCCTTGATCACGATTCACAAAGGTGGGCTTGGTATCATCGTGGGCAGAACCCACAAAATGTGCCAACTGAACCTATAAATAGAAATTATTACCGTCACAGTTATTTTAGTGC
AGAGGGAGTTGCACAGGGACGACCTGGCATTTCATTGGAAACACCTTATCAACGTCATGGTTATACAAGATTTCCCCCATCTTTTCCATGAAATTGAAGTACTTTATGTCTATGGCCACAAAGGATTAGGGAATAAAGAGTGCCATGTCAGCATACTATTTTATTATTTTTAAATCTCGTTTTCCTACATGATCATCTTT
GTATATTTTTTTTCAGTCTGGGATTCAAATGAACGGCAATCATTTTTATCTTGGTTTGCTTTGGAGGATATGCCTGCACTAAGTTCAAGAGCCTGGTAATTTCCAGTCTGGATTTTGTAAATTCTCACCTAGAAAAAATATTTCTTTTGTAGCACGAGGTGCACATTGAACCATAGATTAGATTTAAGCTCATGGTTTTA
TCTTGATACAAGACGATTTCATTTTGTGAATTCTAACCAATTAAATTGATACAGTTACTAGTATTGTATCTGTTACTGTTGAATGGCCTAAATGGCTGGCTTAAACGGTTTCTTGATAACTAAAAAAAA
>TRINITY_DN120088_c4_g2_i6 from sample A1 / Example unspliced isoform:TTTCGATCCGACGGCGTAGGACTCGCTAGTCGCATTTGTTATTCTCTTTCGTCTAACTGCAACGGGTTTTATGTACGCCACTCCTATCACGGAGAAAGGAGGATAACGCGACTCAGAATTGGCACTGGAATTCATTGATTTGCCCTCAAATTTTCGTCCAGCGGAACTTGAGATCATATCAGGGCCTGCGAAACGTTTCT
GGGATTTTTACCGGCTTTCTTTCCCGGGAAATCTGTCGAGAAGGGGAAAATCGATGGTGTTGAGGCGATGAAATAAGTTGCGgtaatcgcggatccctcttttacagaatgaattttgatgaaaatttcggtccgcctttgtcttcagattaccgatcgaaggatatttgccggggtaaactttaagggggattattatc
cctaaaatttgaggttaattgtagGAAACGGTGCTTGAATTGCGGTTTCAAGAGAAGGGATCTGGGGAGCAATGGAGACGGGAAACAGAGATAAGCAGTCGCAGGGGGCATTTTTGTGTTCGGGTTCGATATCGTGTTCTGTTTGTTTGGAGGCAGTCTCCGACAGAGGGGAGAGATCGATTGCCAAGCTCAAATGCGGG
CATCATTTTCATTTAGATTGTATTGGGTCAGCATTCAATGCCAAGGGAGCAATGCAGTGCCCAAACTGCAGGCATGTAGAGCATGGTCAGTGGCTCTATGCCAATGGCTGCCGTCCATATGAAGAATTCACAGTTGAGGATCTACCAAATGATGATTACCTATATGATCTTCATCATACTGAAATGCCATTTGGATTCCC
ATGGTGTCCATACCAAGGTTCTTATTCCCAATTATCAGTGTCTCTTGAGGACCCTGAGCCTCCATCAGGTGCTTATCCAGATCTGATAGTAAATGTCTTGTATGGTGAGCATCCAAGTGCGTCAAATGGGGCTCATGTATGCCCTTACCTTGCTGTTCATGGTCTTACTAGGGCAAGGCAAATGCCAGTCTCCATCAACA
ATGCTGGGTCTTCTAACAATGTGGGGGATATAGGTCCTCATCACCGAAATGCAGCCTCAGCAATTGGAGAGGCATTTAGTTCCCATGCATTTCCTGCATCTGAAACAACACATCATCGTCATTGGCATTCTTCCAATACATTTCCTAGCAATAACAGTGTACCTAGTGCGGAGGATCCAGCTTTACCCGCGTTGCCTTCA
CATGATAGATTTGCAATACCCAGGACAGACTCTGAACGTCTACACAGAACTGGATCTCCCATGGCTTCTAGTTACGGTGCCAATGGGTTCTATCCCCGTACAGTCAATGCAAGACCTCCTCCACCAATGACTAGTGATTTTGTTCATTCTCAAAATCATATTCATGGGCATGGAGGGGGGCAGCTTTATCATCCACCTGC
TTCTTCTATGCATAGTGGTTTGATAAGCCACAATCGGAGGTCAAGGTCAAGGGATACCCTGGTTCCATCAAGGAGAGTCATTCAAAATATTCCTGCGGAGCAAGCTAGAATGCAAGGAGCCTCAGCCTATCCAATGAGCAGGAGTCAAGATGGAGACAACATGGGGTGGCATCAAAACAACCATTTTTATGGATTGCAGA
TAGAAGGATTTCCTCCAGCTCCTTGGGTACCCCTTGATCACGATTCACAAAGGTGGGCTTGGTATCATCGTGGGCAGAACCCACAAAATGTGCCAACTGAACCTATAAATAGAAATTATTACCGTCACAGTTATTTTAGTGCAGAGGGAGTTGCACAGGGACGACCTGGCATTTCATTGGAAACACCTTATCAACGTCAT
GGTTATACAAGATTTCCCCCATCTTTTCCATGAAATTGAAGTACTTTATGTCTATGGCCACAAAGGATTAGGGAATAAAGAGTGCCATGTCAGCATACTATTTTATTATTTTTAAATCTCGTTTTCCTACATGATCATCTTTGTATATTTTTTTTCAGTCTGGGATTCAAATGAACGGCAATCATTTTTATCTTGGTTTG
CTTTGGAGGATATGCCTGCACTAAGTTCAAGAGCCTGGTAATTTCCAGTCTGGATTTTGTAAATTCTCACCTAGAAAAAATATTTCTTTTGTAGCACGAGGTGCACATTGAACCATAGATTAGATTTAAGCTCATGGTTTTATCTTGATACAAGACGATTTCATTTTGTGAATTCTAACCAATTAAATTGATACAGTTAC
TAGTATTGTATCTGTTACTGTTGAATGGCCTAAATGGCTGGCTTAAACGGTTTCTTGATAACTAAAAAAAA