NA ----> NA
Intron 1 GTAGTGCTTT ... ATTGCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40 | 3 | 2 | 2 |
| A2 | 100 | 0 | 2 | 0 |
| A3 | 100 | 0 | 2 | 2 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 60 | 3 | 5 | 4 |
| A7 | 52.38 | 5 | 7 | 4 |
| A8 | 48.15 | 7 | 3 | 10 |
| A9 | 20 | 4 | 2 | 0 |
| A10 | 60 | 5 | 4 | 11 |
>TRINITY_DN45318_c3_g1_i2 from sample A7 / Example spliced isoformTGCATTTGGATATACCACAGGGTAGAAGATAACAGTGTTTCCAAGGAAGTTGCAAAACTGTTCTTTGAGGATTTTAATGTCTATCTTTGTTTGAAAAATTTAGTATACTAGTATATCTTTTTAGCATATAGTATAATCGCACATTTTGGTATGTCCTCCAATTTTGGATGAGATTGAACTTCTGGGAATTGTCTAACTAT
TCTATGATTTGGACCCATTTTGGTCATATATTAGCCTTTTCTGGTCATGATTTGACAGATTCTGGTCATAAATGGGTCCAAATTGTAGAATAGTTAGACAACTCTGAACTTTGTTATTATAGATCCAGCCTCTCTTTGTGAATATTGCAACTAGATAAGATAAGATAATTTTATTAATGTCCGACTAATGACCAGTTACC
ACAAAAGTAGGTCAATGGGACTGCCGAGTACAATGATCCCCTTAAAAAGCAGGAATATCAAAAGGTCTCCTATAAAAGGCAATACTCAGAAAATAATGTAAAGTAAAGTAGAGAAGAGAAAGAGGAGAAATCTATGCTGAGGCAGGGAAAGCCATCGACCCTCAGTACGGGAGAACAAATGGGGGTGGAGAAATACACGA
AAAGGATCCAGGAGCAAAGAAATCCAAAAGAACTCTTGCTGAATAAGTGCTCATTGTGGAGGACTTTTAATGAAAAGGGGTAGTATTCATTGGGAAACTATATGATCCCTGGTGTTCTATCACTCTTTGCTGCACTGGGTTTCTTATGTTATGGGAGAAGGCTTTTCTTTATGCTAGCCGTTTCCCAATTGAATCAAAGG
GCAGAGGAAGAAGCTGAACGAGCTCTGTAAATACGTTTTTTGGTAAAGCCATGGTATTCTTCTTCATTTGTAGATGCTAAAGTTTGAGTGTTACTAATTGGAAGTATATTTGAAATATTTGAAAAATATAATGTTTGTTATCTGTTCTATATCTTAGTGTCATCAGTGTTATTTCAGTTCATTTCTGGACATATATGATG
TTCCCGAATCCCAACTCTATGTGGATTTCTATTTGAAT
>TRINITY_DN45318_c3_g1_i1 from sample A7 / Example unspliced isoform:TGCATTTGGATATACCACAGGGTAGAAGATAACAGTGTTTCCAAGGAAGTTGCAAAACTGTTCTTTGAGGATTTTAATGTCTATCTTTGTTTGAAAAATTTAGTATACTAGTATATCTTTTTAGCATATAGTATAATCGCACATTTTGGTATGTCCTCCAATTTTGGATGAGATTGAACTTCTGGGAATTGTCTAACTAT
TCTATGATTTGGACCCATTTTGGTCATATATTAGCCTTTTCTGGTCATGATTTGACAGATTCTGGTCATAAATGGGTCCAAATTGTAGAATAGTTAGACAACTCTGAACTTTGTTATTATAGATCCAGCCTCTCTTTGTGAATATTGCAACTAGATAAGATAAGATAATTTTATTAATGTCCGACTAATGACCAGTTACC
ACAAAAGTAGGTCAATGGGACTGCCGAGTACAATGATCCCCTTAAAAAGCAGGAATATCAAAAGGTCTCCTATAAAAGGCAATACTCAGAAAATAATGTAAAGTAAAGTAGAGAAGAGAAAGAGGAGAAATCTATGCTGAGGCAGGGAAAGCCATCGACCCTCAGTACGGGAGAACAAATGGGGGTGGAGAAATACACGA
AAAGGATCCAGGAGCAAAGAAATCCAAAAGAACTCTTGCTGAATAAGTGCTCATTGTGGAGGACTTTTAATGAAAAGGGGTAGTATTCATTGGGAAACTATATGATCCCTGGTGTTCTATCACTCTTTGCTGCACTGGGTTTCTTATGTTATGGGAGAAGgtagtgctttctagcagcagctatttctctaatcattatt
ttcaaaatttaatattatgtctggaataatatgatttaaaatgtctggctttcgtttttacagttttcctacactattgctgcagGCTTTTCTTTATGCTAGCCGTTTCCCAATTGAATCAAAGGGCAGAGGAAGAAGCTGAACGAGCTCTGTAAATACGTTTTTTGGTAAAGCCATGGTATTCTTCTTCATTTGTAGAT
GCTAAAGTTTGAGTGTTACTAATTGGAAGTATATTTGAAATATTTGAAAAATATAATGTTTGTTATCTGTTCTATATCTTAGTGTCATCAGTGTTATTTCAGTTCATTTCTGGACATATATGATGTTCCCGAATCCCAACTCTATGTGGATTTCTATTTGAAT