sp|Q8LHA8|CCD22_ORYSJ ----> Cyclin-D2-2
Intron 1 GTAAGCCTAG ... CTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.29 | 11 | 6 | 3 |
| A2 | 0 | 4 | 0 | 0.3 |
| A3 | 30.77 | 9 | 4 | 5.3 |
| A4 | 38.46 | 8 | 5 | 3.3 |
| A5 | 0 | 2 | 0 | 0.7 |
| A6 | 0 | 12 | 0 | 0.7 |
| A7 | 20 | 4 | 1 | 0.3 |
| A8 | 0 | 5 | 0 | 0.7 |
| A9 | 25 | 18 | 6 | 2 |
| A10 | 0 | 4 | 0 | 0.7 |
>TRINITY_DN100640_c0_g1_i2 from sample A1 / Example spliced isoformCTTGCCCGCCCGCTACTTGTACAACATCTTACCAGATCCGCTTGGGCTGAAAACTTTTGTTGGAAGCATTTAGGTTTATATACAACCTTTGAATATCAGCGGGTTTTAATCGTTTGATTGCATGCTGCAATGGCGAAATATATGATGTACAGTTAGGCCCTGGCTTAGATTAGCTTTACTTTGATTCATGGCACCCAGTT
TTGATTTTGATTGTGTCCCCAACCTCCTGTGCGCTGAAGATGCCAGTGTAGTTGCGTGGGATGATAATGATGATGATATCCATGAGAATGCCAATAAGGAAACCTGCATTTGCCTGCATTCTCCTGATCTCGAGGGTTTCCCGGATCTGCCAGCGGAAGATGATGAATCAATTTCCTTTCTTGTGGAGAAAGAGTGCGAT
CACATGCCTCAGGATGGCTATTTACAGAGATTCCAAGCTCGAACTCTAGACGTCTCTGTGCGCCAAGATGGTCTAAGCTGGATTCTGAAGGTACATGCTCACTATAATTTTGGGCCTCTCACCGCCTATCTGGCTATCAATTACCTTGATCGGTTCCTCTCCAGCTACCAAATGCCTCAAGGGAAGGCTTGGATGCTTCA
GCTCCTATCAGTTTCTTGTTTGTCCTTGGCTGCAAAGATGGAAGAGACTGATGTTCCACTGCTGGTAGACTTCCAAATTGAAGATGCTAAATACGTTTTCGAAGCCAGAACTATTGAGAGAATGGAGCTTCTGATCCTCACCACTCTCAAATGGAGATTACGTTCTATTACTCCGTTTTCATTTCTTCACTACTTTGTTC
ATAGAGCAGCGGGTGATCAGTCCCCTCCTAGATCTTTGATAACTCGATCAATCGAGCTAATACTTGCCACGATCAGAGTGATCCACTTAGTGGGCCATCGCCCATCGGCAATAGCTGCTGCCGCTGTAATATGTGCTGCCGAGGAATTTGTACCTCTACTAGCATTGGACTACAAGAGCGCCTTGTGCCGTGCTCCTGAA
CATAATAAAGAAATGATATATAGTTGCTACAGTGTTATGCAAGATATGCTCATTCACAGAATCTGGACGTCGAAGAAGAAGCGGACCTCTGGATCCTTATCCACTCCTCGAAGCCCCGTTGGGGTTTTGGACGCCGCTTGCTTGAGCTGTAACAGCGAAACAGCTACTTCTATTGTCTCTTTCACTTCAAACCCCTCAGC
CATCACTGGAGACAAGAGAAGAAAGTTGAATGCTTTTTGCGATACAGTGTGATTTGAAACTATGGTCAAGATCAGGAGCTTGATCATAGTACCCAAAACCAGAAAGAAAAAGACCAAAAAAAAAAACTCTGTTTGGGAGAGAAGGGTTTTGCTCAGGCGTTTGCTGCTGGTCGAATGACTGTTATCCCAAAAACGTAAAT
GGATATGGCCGCGATATATTCTTTCGATCATTTGCCAGGAAGACTCGATCGTAGGGTAAGCTTTTGGGTTATTTATGGTGAAAGACGCGCGTGGCGTGGCTTCTGGCTTCTTCCCCGCCAACTGTTTTATTCGAAAATCTTAAAAATGCCTTGCAATATCTTTTCATGTGTTACCTACTACCGAAAGAATTGGTTATATT
TATAGTTCATTTGCAGGGTTATATGTATATCCTCCTGTCTGAGACGGAATCTGTCATGTTTGATCAAGGCTTCCAAACTATAACCGCATTTTCCACAGCGGGCTATAGTGTAGAATCTAGATGATGCAGGGATTAGAACACAGGATGCACTAGTTTTGGTTTTAAAAGCTGCGAGAAAACTTATGAAATCTCCAGTTTTG
ATATAATATGGAAATGAAAATTATGCAATCGGGTCTCCTGATACGACCTTTGTCTGTTGGTG
>TRINITY_DN100640_c0_g1_i1 from sample A1 / Example unspliced isoform:CTTGCCCGCCCGCTACTTGTACAACATCTTACCAGATCCGCTTGGGCTGAAAACTTTTGTTGGAAGCATTTAGGTTTATATACAACCTTTGAATATCAGCGGGTTTTAATCGTTTGATTGCATGCTGCAATGGCGAAATATATGATGTACAGTTAGGCCCTGGCTTAGATTAGCTTTACTTTGATTCATGGCACCCAGTT
TTGATTTTGATTGTGTCCCCAACCTCCTGTGCGCTGAAGATGCCAGTGTAGTTGCGTGGGATGATAATGATGATGATATCCATGAGAATGCCAATAAGGAAACCTGCATTTGCCTGCATTCTCCTGATCTCGAGGGTTTCCCGGATCTGCCAGCGGAAGATGATGAATCAATTTCCTTTCTTGTGGAGAAAGAGTGCGAT
CACATGCCTCAGGATGGCTATTTACAGAGATTCCAAGCTCGAACTCTAGACGTCTCTGTGCGCCAAGATGGTCTAAGCTGGATTCTGAAGGTACATGCTCACTATAATTTTGGGCCTCTCACCGCCTATCTGGCTATCAATTACCTTGATCGGTTCCTCTCCAGCTACCAAATGCCTCAAGGGAAGGCTTGGATGCTTCA
GCTCCTATCAGTTTCTTGTTTGTCCTTGGCTGCAAAGATGGAAGAGACTGATGTTCCACTGCTGGTAGACTTCCAAATTGAAGATGCTAAATACGTTTTCGAAGCCAGAACTATTGAGAGAATGGAGCTTCTGATCCTCACCACTCTCAAATGGAGATTACGTTCTATTACTCCGTTTTCATTTCTTCACTACTTTGTTC
ATAGAGCAGCGGGTGATCAGTCCCCTCCTAGATCTTTGATAACTCGATCAATCGAGCTAATACTTGCCACGATCAGAGTGATCCACTTAGTGGGCCATCGCCCATCGGCAATAGCTGCTGCCGCTGTAATATGTGCTGCCGAGGAATTTGTACCTCTACTAGCATTGGACTACAAGAGCGCCTTGTGCCGTGCTCCTGAA
CATAATAAAgtaagcctaggattacaagagggccttaaatgcgtttcatttctgtattgaagttctattcatgaagttttattggaatgggcttgttccccctttttgcagGAAATGATATATAGTTGCTACAGTGTTATGCAAGATATGCTCATTCACAGAATCTGGACGTCGAAGAAGAAGCGGACCTCTGGATCCTT
ATCCACTCCTCGAAGCCCCGTTGGGGTTTTGGACGCCGCTTGCTTGAGCTGTAACAGCGAAACAGCTACTTCTATTGTCTCTTTCACTTCAAACCCCTCAGCCATCACTGGAGACAAGAGAAGAAAGTTGAATGCTTTTTGCGATACAGTGTGATTTGAAACTATGGTCAAGATCAGGAGCTTGATCATAGTACCCAAAA
CCAGAAAGAAAAAGACCAAAAAAAAAAACTCTGTTTGGGAGAGAAGGGTTTTGCTCAGGCGTTTGCTGCTGGTCGAATGACTGTTATCCCAAAAACGTAAATGGATATGGCCGCGATATATTCTTTCGATCATTTGCCAGGAAGACTCGATCGTAGGGTAAGCTTTTGGGTTATTTATGGTGAAAGACGCGCGTGGCGTG
GCTTCTGGCTTCTTCCCCGCCAACTGTTTTATTCGAAAATCTTAAAAATGCCTTGCAATATCTTTTCATGTGTTACCTACTACCGAAAGAATTGGTTATATTTATAGTTCATTTGCAGGGTTATATGTATATCCTCCTGTCTGAGACGGAATCTGTCATGTTTGATCAAGGCTTCCAAACTATAACCGCATTTTCCACAG
CGGGCTATAGTGTAGAATCTAGATGATGCAGGGATTAGAACACAGGATGCACTAGTTTTGGTTTTAAAAGCTGCGAGAAAACTTATGAAATCTCCAGTTTTGATATAATATGGAAATGAAAATTATGCAATCGGGTCTCCTGATACGACCTTTGTCTGTTGGTG