NA ----> NA
Intron 1 GTAATAGAAA ... TCTTTACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 4 | 3 | 5 |
| A2 | 100 | 0 | 6 | 2 |
| A3 | 89.47 | 1 | 8 | 9 |
| A4 | 57.14 | 3 | 4 | 4 |
| A5 | 100 | 0 | 2 | 2 |
| A6 | 42.86 | 6 | 4 | 5 |
| A7 | 52 | 6 | 7 | 6 |
| A8 | 57.89 | 8 | 7 | 15 |
| A9 | 52.94 | 8 | 8 | 10 |
| A10 | 58.62 | 6 | 6 | 11 |
>TRINITY_DN38169_c0_g1_i1 from sample A9 / Example spliced isoformGGGCAAAGTTGCGTAGGTGTTCTCTCGGGCCCGAATTGTCGAGGAAAGAAAGCATCTCTGATGTACTGAGAGAAAGTAAAAGATATAACAACGAATCCTCTGCTTTTCCTATGCGGAATCCTTGGCTTTGAAACCGTGTGCGCTTCTCATGTGAAGAAATGAATGTATTGTCTATTTATAGATACCATTGGTTTGACAGG
TCTGTATTCATTATCTCCTCTCCATCACTCTCTCTCTCTTTTTATCCTCATCAGGTGCAATCCAGCGGATCAGATGCTCCAGATGGCCTTTCTTGGCATTGTTTCCGCGGTCTCTCTCTTTTTATCCTCATCAGGGGGAAATCCAGTGGATCAGATGCTCCAGATGGCCTTTCTTGACATTGTTTCCGCGGGCATTTTTC
AACTTGCGGCAGTCACCAATTTTGCAGGGTTCAGGCGCTGTTTCTTGCAATATGAAGAAATTGATGTGTTCAGAGTGTACAGCTGTGGATCTAGAAGGGCTAGACCTTCTGCGATCCACATCCGTACTAGTTTGTCCACAGCAATTTCTTCGATGGCATTATGTATGTCAATTTCCAAAATATGGAACAGCACCCAAATG
TTTACTGTCCCATAAAAGACTCGACTCGGGTATGCTACTTATGTTGCCAAAGTATTTCAGATGATCAAATTCGTTATGTCTGATTTAAAATTTGAAATATATTCTAGAAGCCTTCTTGCTTAACCCATGGGAGTCCGCTGATCTTTTTTCTCTACACCCGATTCACGAAGCTCTCCAGAGTGGGGTTTTGGGACATCGTT
TTAGGGTTCTCACATAGAATGATCTGAGAATGAATTTGGGCCAGAGGCAGTAAACTCCCACCTATCTACCCTTGCACCACGGTCCAACCGAGAATGATTTTTTAAAAGTTTAATCATATGGGCATTATCTCTTTTGTGCGATGCAATGAAGTTGTTTGGATTTCCAATATCTATTTCGTCTTTTAAGAAAGAAGCTATTC
CTTATATATAATAAAGTTGCCCATTATTTGTGGCCATTATCTCTTTTGTGCGATGCA
>TRINITY_DN38169_c0_g1_i3 from sample A9 / Example unspliced isoform:GGGCAAAGTTGCGTAGGTGTTCTCTCGGGCCCGAATTGTCGAGGAAAGAAAGCATCTCTGATGTACTGAGAGAAAGTAAAAGATATAACAACGAATCCTCTGCTTTTCCTATGCGGAATCCTTGGCTTTGAAACCGTGTGCGCTTCTCATGTGAAGAAATGAATGTATTGTCTATTTATAGATACCATTGGTTTGACAGG
TCTGTATTCATTATCTCCTCTCCATCACTCTCTCTCTCTTTTTATCCTCATCAGGTGCAATCCAGCGGATCAGATGCTCCAGATGGCCTTTCTTGGCATTGTTTCCGCGGTCTCTCTCTTTTTATCCTCATCAGGGGGAAATCCAGTGGATCAGATGCTCCAGATGGCCTTTCTTGACATTGTTTCCGCGGGCATTTTTC
AACTTGCGGCAGTCACCAATTTTGCAGGGTTCAGGCGCTGTTTCTTGCAATATGAAGAAATTGATGTGTTCAGAGTGTACAGCTGTGGATCTAGAAGGGCTAGgtaatagaaaatacaaaacccatttaagagccatctcagtgacaactgttggttgaatgagatcaagcaactgtctatcggcagctgtattttcatg
gtcattataattaaatgggttgtgtgtttactctttaccagACCTTCTGCGATCCACATCCGTACTAGTTTGTCCACAGCAATTTCTTCGATGGCATTATGTATGTCAATTTCCAAAATATGGAACAGCACCCAAATGTTTACTGTCCCATAAAAGACTCGACTCGGGTATGCTACTTATGTTGCCAAAGTATTTCAGAT
GATCAAATTCGTTATGTCTGATTTAAAATTTGAAATATATTCTAGAAGCCTTCTTGCTTAACCCATGGGAGTCCGCTGATCTTTTTTCTCTACACCCGATTCACGAAGCTCTCCAGAGTGGGGTTTTGGGACATCGTTTTAGGGTTCTCACATAGAATGATCTGAGAATGAATTTGGGCCAGAGGCAGTAAACTCCCACC
TATCTACCCTTGCACCACGGTCCAACCGAGAATGATTTTTTAAAAGTTTAATCATATGGGCATTATCTCTTTTGTGCGATGCAATGAAGTTGTTTGGATTTCCAATATCTATTTCGTCTTTTAAGAAAGAAGCTATTCCTTATATATAATAAAGTTGCCCATTATTTGTGGCCATTATCTCTTTTGTGCGATGCA
Intron 2 GTATGATCTC ... TTTTGGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.47 | 3 | 8.8 | 7 |
| A2 | 100 | 0 | 2 | 6 |
| A3 | 54.55 | 5 | 7 | 5 |
| A4 | 100 | 0 | 0 | 1 |
| A5 | 58 | 2 | 2.6 | 3 |
| A6 | 62.96 | 5 | 7 | 10 |
| A7 | 52.94 | 12 | 9 | 18 |
| A8 | 58.08 | 14 | 12.8 | 26 |
| A9 | 33.33 | 14 | 3 | 11 |
| A10 | 21.95 | 16 | 4 | 5 |
>TRINITY_DN45474_c1_g1_i4 from sample A7 / Example spliced isoformGGGAAAGAGGGGCAAAGTTGCGTAGTTGTTCTGTCGGGCCCGAATTGTCGAGGAAAGAAAGCATCTCTGATGTACTGAGAGAAAGTAAAAGATATAACAACGAATCCTCTGCTTTTCCTATGCGGAATCCTTGGCTTTGAAACCGTGTGCGCTTCTCATGTGAAGAAATGAATGTATTGTCTATTTATAGATACCATTGG
TTTGACAGGTCTGTATTCATTATCTCCTCTCCATCACTCTCTCTCTCTTTTTATCCTCATCAGGTGCAATCCAGCGGATCAGATGCTCCAGATGGCCTTTCTTGGCATTGTTTCCGCGGTCTCTCTCTTTTTATCCTCATCAGGGGGAAATCCAGTGGATCAGATGCTCCAGATGGCCTTTCTTGACATTGTTTCCGCGG
GCATTTTTCAACTTGCGGCAGTCACCAATTTTGCAGGGTTCAGGCGCTGTTTCTTGCAATATGAAGAAATTGATGTGTTCAGAGTGTACAGCTGTGGATCTAGAAGGGCTAGGTAATAGAAAATACAAAACCCATTTAAGAGCCATCTCAGTGACAACTGTTGGTTGAATGAGATCAAGCAACTGTCTATCGGCAGCTGT
ATTTTCATGGTCATTATAATTAAATGGGTTGTGTGTTTACTCTTTACCAGACCTTCTGCGATCCACATCCGTACTAGTTTGTCCACAGCAATTTCTTCGATGGCATTATGTATGTCAATTTCCAAAATATGGAACAGCACCCAAATGTTTACTGTCCCATAAAAGACTCGACTCGGGTATGCTACTTATGTTGCCAAAGT
ATTTCAGATGATCAAATTCGTTATGTCTGATTTAAAATTTGAAATATATTCTAGAAGCCTTCTTGCTTAACCCATGGGAGTCCGCTGATCTTTTTTCTCTACACCCGATTCACGAAGCTCTCCAGAGTGGGGTTTTGGGACATCGTTTTAGGGTTCTCACATAGAATGATCTGAGAATGAATTTGGGCCAGAGGCAGTAA
ACTCCCACCTATCTACCCTTGCACCACGGTCCAACCGAGAATGATTTTTTAAAAGTTTAATCATATGGGCATTATCTCTTTTGTGCGATGCAATGAAGTTGTTTGGATTTCCAATATCTATTTCGTCTTTTAAGAAAGAAGCTATTCCTTATATATAATAAAGTTGCCCATTATTTGTGGCCATTATCTCTTTTGTGCGA
TGCAACGAAGTTGTTTGGATTTCCAAAATCTATTTCGTTTTTTTAAGAAGCAGCTGTTGCTTATATATAATAAAGTTGTGCG
>TRINITY_DN45474_c1_g1_i2 from sample A7 / Example unspliced isoform:CTGGTCCAAATTCATTCTCAGATCATTCTATGTGAGAACCCTAAAACGATGTCCCAAAACCCCACTCTGGCCAAAAACACAGCAGGAGGATTTCTGTTAAAAAAGAAAAACAACAATAAATTGGAAATGCTTGTGACAGATATAAAGTGAGATCATACCTGGAGAGCTTCGTGAATCGGGTGTAGAGAAAAAAGATCAGC
GGACTCCCATGGGTTAAGCAAGAAGGCTTCTAGAATATATTTCAAATGTTTACTGTCCCATAAAAGACTCGACTCGGGTATGCTACTTATGTTGCCAAAGTATTTCAGATGATCAAATTCGTTATGTCTGATTTAAAATTTGAAATATATTCTAGAAGCCTTCTTGCTTAACCCATGGGAGTCCGCTGATCTTTTTTTCT
CTACACCCGATTCACGAAGCTCTCCAGgtatgatctcactttatatctgtcacaagcatttccaatttattgttgtttttcttttttaacagaaatcctcctgctgtgtttttggccagAGTGGGGTTTTGGGACATCGTTTTAGGGTTCTCACATAGAATGATCTGAGAATGAATTTGGGCCAGAGGCAGTAAACTCCC
ACCTATCTACCCTTGCACCACGGTCCAACCGAGAATGATTTTTTAAAAGTTTAATCATATGGGCATTATCTCTTTTGTGCGATGCAATGAAGTTGTTTGGATTTCCAATATCTATTTCGTCTTTTAAGAAAGAAGCTATTCCTTATATATAATAAAGTTGCCCATTATTTGTGGCCATTATCTCTTTTGTGCGATGCAAC
GAAGTTGTTTGGATTTCCAAAATCTATTTCGTTTTTTTAAGAAGCAGCTGTTGCTTATATATAATAAAGTTGTGCG