sp|Q8RWJ7|SHH2_ARATH ----> Protein SAWADEE HOMEODOMAIN HOMOLOG 2
Intron 1 GTGTATACTC ... CAAATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 10 | 0 | 0 |
| A2 | 45.45 | 12 | 2 | 10 |
| A3 | 0 | 6 | 0 | 0 |
| A4 | 0 | 4 | 0 | 0 |
| A5 | 50 | 2 | 0 | 2 |
| A6 | 26.53 | 36 | 1 | 13 |
| A7 | 0 | 25 | 0 | 0 |
| A8 | 15.91 | 37 | 0 | 7 |
| A9 | 20.45 | 35 | 0 | 9 |
| A10 | 7.69 | 24 | 0 | 2 |
>TRINITY_DN38238_c0_g1_i2 from sample A6 / Example spliced isoformTTTCAAGTTGTTATAAAGGCGCTCCTGGCTTATTTCAAAATTTATCCAACACCGTGTGCCACACATGAACGTTATGTGGTCGAAACAATGGACAACCCACGGTAGAAGATGTGCCAATTTTCATTTCATGGCAGGCAAGTTGGGTACGCTCAACAAAGTGGGATCACCATTTTCTAACCGCATAGCACGACATTCATCAA
TGCCAGAGATTGAACCAGATTCCGTCAATGAAGAACATGTTTAAAGCTCAATCCTCAAAGCCCAGGTTCTATCTTTCTCTACTTCTAGGGTAAATGACGGAGGAGCGTGCTGTTCAAGAACTACTTGATGGGCATGTGCATGCGTGGGGAAACGGGCCATACATCGTCTTCCCACACTAAAAGCAAACTTCAAAGGAAGC
CCAATTGGACCACACGAAAACCTACACACCCGTTTACTGTTCACTTCCCTACTCTCTGCTCTCTGCTTGGGACGTCACTCGAACTGACTTTGCTCTGAATGAATTGAAGAAATTGAAGGCCCAGAGAAATTGAAAAAGAAAGGATTTTTAACAAGATGGGACGACCCCCTCAACGTGAATCTCAGTATTGTCGTTTTACA
AAGAAGGAAGTTGAACAGATGGAAAAAGCCCTAGAAGAAATCAAGGGTGCAGCCCCTGCTCAGGATGTGGTCCAGTCCCTTGCTGAAAAGTTTAATGCTGCACCTGAACGAGCTGGAAAAGTTCCTGTACAAGCAAAACAGGTATTAGGCTGGTTCAACAACAAGCGACGGCCACAGAAACCTAAAGGTGATCTAGTGCC
AATGGAATCAAATTCTACGCCCTCACCTCTTAATGATTGTCCTGCAAAGAGCGCCATGGCAAATTCTGATGAAGTCCCTTCAGAAAGGCAGCCTTCAGATACTCCTGAATGGGAATTTGAGGCTAAATCTTCGAAGGATGGAGCTTGGTATGATGTTGCCACTTTCCTTACACATAGGATACTGGAGTCAGGTGAACCGG
AAGTCCGTGTGAGATTTGCTGGTTTTGGGGCAGAGGAGGATGAGTGGGTCAATGTGAGAAAGGCTGTTCGTTTACGTTCTCTTCCTTGCGAGGCAACAGATTGTGTGGCTGTTAAGCCAGGAGACCTCATACTTTGTTTTCGGGAGGGCAAGGAGCAGGCAATCTACTTTGATGCCCATGTCATGGATGTCCAACGAAAG
CGCCATGATGTACGGGGGTGTCGTTGCAGGTTTTTAATTCGTTATGACCATGATCAGACTGAGGAAAGAGTGCCCTTGCGAAGAGTTTATCGCCGTCCGGAGGGCTCTTTTTCTTGGGAGTTTGCAGAAAATGTTTAACTAGTGAGATTGTCAGCATCCAGAAATGTTATCGTGCATGCTTTGATGATTATTTTCCTGAG
TTGGACCAATGATTAGGTTTAAGGATGTTACAACCCCTCTTGTAACCCCTTCTTAATAAGCATGTATTAAAATTCTCCTCTCAGATAGATACAGAAAATCAGTTAGGGTAGGGTGTGGGTACTTGTTCTCAGTTGGCAGGTACATGAAGGGTTTATGGAGCTATTGCTTGTCAAATTTTCTACTGTTTTTCATTCTAGAA
TCTTCACATGTAATGTAACATTATTTTTATGGGAAATGCATGCCCCATGTGTAATATTTCATCAGTGGAACTTATAAGATGACCTCATCTCATAGGTCACTCGAATTTTATGGGCATGCTCTATAAATTTGCATTCATTGTTAAAGGGATGCAGACTTTTCTAATCTGAACTTGTTATTATATAACTGAATGAATTTTGG
TTGAGGCTTTGTTTCATCTAAGTTTAAACAAAAGCTTTTTTGTCATGATTGTGGCAATGATTTCTTAATATGATTTTGTATGAGACCGTTATCAACATTGTCGAATTTGTTAGAACTGACAAGTGACAGAAGATGATGAAGTTGACTACAAAATTTTAAAGGATTTTTTGTATACAAAATACCTATGTAAATGAAACGTG
GAAATATTGTTAGTGGGCTGTGGTGTCGAATTTGTTAGAACTGACA
>TRINITY_DN38238_c0_g1_i1 from sample A6 / Example unspliced isoform:TTATGACCATGATCAGACTGAGgtgtatactcattttgcactgaaattttagcatgattttgcataggacacgactattttggtttatgtcatttctaatttaaggaatattgaatgtgaagaagagattttgtttcaaattgcagGAAAGAGTGCCCTTGCGAAGAGTTTATCGCCGTCCGGAGGGCTCTTTTTCTTGG
GAGTTTGCAGAAAATGTTTAACTAGTGAGATTGTCAGCATCCAGAAATGTTATCGTGCATGCTTTGATGATTATTTTCCTGAGTTGGACCAATGATTAGGTTTAAGGATGTTACAACCCCTCTTGTAACCCCTTCTTAATAAGCATGTATTAAAATTCTCCTCTCAGATAGATACAGAAAATCAGTTAGGGTAGGGTGTG
GGTACTTGTTCTCAGTTGGCAGGTACATGAAGGGTTTATGGAGCTATTGCTTGTCAAATTTTCTACTGTTTTTCATTCTAGAATCTTCACATGTAATGTAACATTATTTTTATGGGAAATGCATGCCCCATGTGTAATATTTCATCAGTGGAACTTATAAGATGACCTCATCTCATAGGTCACTCGAATTTTATGGGCAT
GCTCTATAAATTTGCATTCATTGTTAAAGGGATGCAGACTTTTCTAATCTGAACTTGTTATTATATAACTGAATGAATTTTGGTTGAGGCTTTGTTTCATCTAAGTTTAAACAAAAGCTTTTTTGTCATGATTGTGGCAATGATTTCTTAATATGATTTTGTATGAGACCGTTATCAACATTGTCGAATTTGTTAGAACT
GACAAGTGACAGAAGATGATGAAGTTGACTACAAAATTTTAAAGGATTTTTTGTATACAAAATACCTATGTAAATGAAACGTGGAAATATTGTTAGTGGGCTGTGGTGTCGAATTTGTTAGAACTGACA