NA ----> NA
Intron 1 GTGCCTACTT ... CATTCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 2 | 1 | 3 |
| A2 | 100 | 0 | 6 | 9 |
| A3 | 100 | 0 | 0 | 1 |
| A4 | 60 | 1 | 0 | 3 |
| A5 | 100 | 0 | 1 | 1 |
| A6 | 71.43 | 3 | 8 | 7 |
| A7 | 88.57 | 2 | 17 | 14 |
| A8 | 62.5 | 3 | 4 | 6 |
| A9 | 86.21 | 2 | 10 | 15 |
| A10 | 45.45 | 3 | 3 | 2 |
>TRINITY_DN35209_c0_g1_i1 from sample A6 / Example spliced isoformGGAATTTACCGAGCTGTAGATGAGGGGAATAAAGGTGGGCTAGAAAAAGAAGTCGCAGGTGTCAGGCCTGAAATCTTTATTTTTCACATGAGGTAAGTGGAGAGATAGGAGAAGGACACAAAGAAAATTATTGTGGGGGCACCATTGACACAGTATTTTGATTTTCGTATTCTTTGGTGTTTCTGGTGAAGTGGTTTTCT
TGCTAGTTTGGGGATTCTTATACTCTGAAATCTCTTCCCCATTTGAGCTTGTTTAGATTGGATGCTAACAATTCCTAAATAAGTAATATCATCGAAGGTGGATATCAATTTTGGTTTGAACTTAGAAAAGGCAGGAAATCTATACCGGGTGTCCGTGTGGAATCTGTATTGGCTGTGAGCGTGTGTGAGGGAGAAAAATA
TAGTGTGTTGGGTGTGTGAGGAGTTAAATCGAATCGAAAGAAATGGGGCAAGAAGGGGGTTTGGATATGTCTCAGAGGAGAGTGGTATTGGTGCTTGTAGATGGGTTGGGAGATGTCGGGATACCATCTTTGGGATTTCACACTCCTCTGCAAGTTGCACACACCCCTACCCTGGATGCTCTGGCTTGTGCTGGAGTCAG
TGGACTCATGGATCCAGTGGATCCGGGCTTGGCATGTGGAAGTGACACTGCCCATCTTTCTTTATTGGGTTATGATCCGAGAATTTACTACAGAGGCAGGGGTGCATTTGAATCAATGGGAGCAGGTCTTGCCATGTCACCGGGCGACATCGCCTTCAAGAGTAATTTTGCAACTATAGATGAGAAAACAGGGATTGTAA
CAAGCAGGAGGGCCGACAGACATTTTGAGGAGGAGGGTCCAATATTCTGCTCAGCATTGGATGGAATTAAGCTGTCTTCTTTTCCAGAATATGAGGTTAGAGTCAGATATGCAACAGAGCATAGGTGCGGCGTGGTTTTAAAAGGGCCAAAATTAAGTGGGAACATTTCTGGCACAGATCCCCTAAAGGATAACCGACTA
TTGCTGGAGGCAACTGCTTTAGATGATACTGAAGAAGCAAAACATACAGCAGCAGTTGTTAATGAACTTTCAAAGGAGATGTCTCAGATTTTGATGTCACATCCATTGAACAAAACACGTGCTTCACAGGCGAAGAGCATTGCCAATGTTGTGCTTTTACGTGGTTGTGGTATCCGGATTGAGGCACCTGGAGCTACTGG
AGACTACCGCACACTTTTGACATCAAAGGCAAAAGCAATAGCCAAGGCACTTTCTGCTCCACTGGAACCACCACCTCCTGTTTTTGTGCCTGGAGAGGAGGATTGCAAAGATGGTCGTAGAGAAGGGTATGACTTTGGATTCCTGCACATAAAGGCTATTGATGATGCTGGACACGACAAGGCAACTCTGCTGAAAGTAA
AAGCTTTTGAAGCTGTAGATAGGGCAGTTGGCCAGTTGGCCCGGCTACTCTGGCAGGCAGAATGCAGTGGTGTTGCCTGCTATTCATTGTGCATCACCGGAGACCATTCGACTCCTGTTGAATATGGTGACCACAGCTATGAACCTGTACCTTTTACCATTTGTCACCTGAAGGACTTTGTCAATGCAAGAGGTGGCGAA
TTAGCAGTGATGGAAGCCTCATTGGATCCATTCAATCTTCCTTCGGTCAATGGTGATCTTGAGAAGGAAAAGCAAACTTACTTAACTTTTGAAGATGATAACCTACACCAGTGTAAACCTGTTTCTGGTGATTCCGTCGTCATATTCAATGAGATTGCTGCAGCTAGAGGATGCTTAGGCCGTTTTCAAGGATGTGAAAT
GATGGGAATTCTCAAAGCATATCTGCAGTTACCATGATCATCCTTTTGTGGAATAATGGAGAAATCACTGTATAAGTTCCTTAGCATTGGCGAAAATATCTAGCTAATTTTACGCAGATGCAAAACAATTTTATTTACTGACTACACGGCAATTTCTGCTAAATACATTGCATATAGAAGTGATAAAATTTTCAGCGGGA
TTCTTCTTTTATAAATCAACTTCGATACATTGATGAGCGATAGTATATGAGGGCCACTTGTGAGCTAAGAAAAATTCCTCTGGCATTGTTCTAGAACCATAATAAGCATAATGTAGTCAAATTATGAGAAACATGTCTCAATCATTTTATAATATTTTTAAATAGGAGTGATAAGGGCTTTCCTGATCACTATAATCCTT
AGGCAGTTCTTTGTTCCGTAAACAATTACTCTTTTCTGACTTTGAAGGTCAGTTGGTTGTTACATGGTTTCTTCTGTACCATTTCTAAACATTTTGCTTCTGTAGTGCTGATCCAAATTAGATTGTAACCTATGCTGCTCTACAGGTTGAAAAGATT
>TRINITY_DN35209_c0_g1_i4 from sample A6 / Example unspliced isoform:GGAATTTACCGAGCTGTAGATGAGGGGAATAAAGGTGGGCTAGAAAAAGAAGTCGCAGGTGTCAGGCCTGAAATCTTTATTTTTCACATGAGGTAAGTGGAGAGATAGGAGAAGGACACAAAGAAAATTATTGTGGGGGCACCATTGACACAGTATTTTGATTTTCGTATTCTTTGGTGTTTCTGGTGAAGTGGTTTTCT
TGCTAGTTTGGGGATTCTTATACTCTGAAATCTCTTCCCCATTTGAGCTTGTTTAGATTGGATGCTAACAATTCCTAAATAAGTAATATCATCGAAGGTGGATATCAATTTTGGTTTGAACTTAGAAAAGGCAGGAAATCTATACCGGGTGTCCGTGTGGAATCTGTATTGGCTGTGAGCGTGTGTGAGGGAGAAAAATA
TAGTGTGTTGGGTGTGTGAGGAGTTAAATCGAATCGAAAGAAATGGGGCAAGAAGGGGGTTTGGATATGTCTCAGAGGAGAGTGGTATTGGTGCTTGTAGATGGGTTGGGAGATGTCGGGATACCATCTTTGGGATTTCACACTCCTCTGCAAGTTGCACACACCCCTACCCTGGATGCTCTGGCTTGTGCTGGAGTCAG
TGGACTCATGGATCCAGTGGATCCGGGCTTGGCATGTGGAAGTGACACTGCCCATCTTTCTTTATTGGGTTATGATCCGAGAATTTACTACAGAGGCAGGGGTGCATTTGAATCAATGGGAGCAGGTCTTGCCATGTCACCGGGCGACATCGCCTTCAAGAGTAATTTTGCAACTATAGATGAGAAAACAGGGATTGTAA
CAAGCAGGAGGGCCGACAGACATTTTGAGGAGGAGGGTCCAATATTCTGCTCAGCATTGGATGGAATTAAGCTGTCTTCTTTTCCAGAATATGAGGTTAGAGTCAGATATGCAACAGAGCATAGGTGCGGCGTGGTTTTAAAAGGGCCAAAATTAAGTGGGAACATTTCTGGCACAGATCCCCTAAAGGATAACCGACTA
TTGCTGGAGGCAACTGCTTTAGATGATACTGAAGAAGCAAAACATACAGCAGCAGTTGTTAATGAACTTTCAAAGGAGATGTCTCAGATTTTGATGTCACATCCATTGAACAAAACACGTGCTTCACAGGCGAAGAGCATTGCCAATGTTGTGCTTTTACGTGGTTGTGGTATCCGGATTGAGgtgcctacttttcaaca
gaagcatggcctctggccatgcatggtagcacctaccaaaatcattgcaggacttggactatctctgggtattgacattcttcagGCACCTGGAGCTACTGGAGACTACCGCACACTTTTGACATCAAAGGCAAAAGCAATAGCCAAGGCACTTTCTGCTCCACTGGAACCACCACCTCCTGTTTTTGTGCCTGGAGAGG
AGGATTGCAAAGATGGTCGTAGAGAAGGGTATGACTTTGGATTCCTGCACATAAAGGCTATTGATGATGCTGGACACGACAAGGCAACTCTGCTGAAAGTAAAAGCTTTTGAAGCTGTAGATAGGGCAGTTGGCCAGTTGGCCCGGCTACTCTGGCAGGCAGAATGCAGTGGTGTTGCCTGCTATTCATTGTGCATCACC
GGAGACCATTCGACTCCTGTTGAATATGGTGACCACAGCTATGAACCTGTACCTTTTACCATTTGTCACCTGAAGGACTTTGTCAATGCAAGAGGTGGCGAATTAGCAGTGATGGAAGCCTCATTGGATCCATTCAATCTTCCTTCGGTCAATGGTGATCTTGAGAAGGAAAAGCAAACTTACTTAACTTTTGAAGATGA
TAACCTACACCAGTGTAAACCTGTTTCTGGTGATTCCGTCGTCATATTCAATGAGATTGCTGCAGCTAGAGGATGCTTAGGCCGTTTTCAAGGATGTGAAATGATGGGAATTCTCAAAGCATATCTGCAGTTACCATGATCATCCTTTTGTGGAATAATGGAGAAATCACTGTATAAGTTCCTTAGCATTGGCGAAAATA
TCTAGCTAATTTTACGCAGATGCAAAACAATTTTATTTACTGACTACACGGCAATTTCTGCTAAATACATTGCATATAGAAGTGATAAAATTTTCAGCGGGATTCTTCTTTTATAAATCAACTTCGATACATTGATGAGCGATAGTATATGAGGGCCACTTGTGAGCTAAGAAAAATTCCTCTGGCATTGTTCTAGAACC
ATAATAAGCATAATGTAGTCAAATTATGAGAAACATGTCTCAATCATTTTATAATATTTTTAAATAGGAGTGATAAGGGCTTTCCTGATCACTATAATCCTTAGGCAGTTCTTTGTTCCGTAAACAATTACTCTTTTCTGACTTTGAAGGTCAGTTGGTTGTTACATGGTTTCTTCTGTACCATTTCTAAACATTTTGCT
TCTGTAGTGCTGATCCAAATTAGATTGTAACCTATGCTGCTCTACAGGTTGAAAAGATT
Intron 2 GTACTCGCTC ... TGTTATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.18 | 5 | 5 | 2 |
| A2 | 33.33 | 6 | 5 | 1 |
| A3 | 6.67 | 7 | 0 | 1 |
| A4 | 66.67 | 1 | 4 | 0 |
| A5 | 33.33 | 7 | 5 | 2 |
| A6 | 18.52 | 11 | 1 | 4 |
| A7 | 29.41 | 6 | 3 | 2 |
| A8 | 20 | 2 | 1 | 0 |
| A9 | 24.32 | 14 | 2 | 7 |
| A10 | -1 | 0 | 0 | 0 |
>TRINITY_DN38864_c0_g1_i2 from sample A7 / Example spliced isoformGCCAAATGTGTTTTTGAAATTATTGTGGCATCGCCATTGAGAATAAGTGCAAGGAATTTACCGAGCTGTAGATGAGGGGAATAAAGGTGGGCTAGAAAAAGAAGTCGCAGGTGTCAGGCCTGAAATCTTTATTTTTCACATGAGGTAAGTGGAGAGATAGGAGAAGGACACAAAGAAAATTATTGTGGGGGCACCATTGA
CACAGTATTTTGATTTTCGTATTCTTTGGTGTTTCTGGTGAAGTGGTTTTCTTGCTAGTTTGGGGATTCTTATACTCTGAAATCTCTTCCCCATTTGAGCTTGTTTAGATTGGATGCTAACAATTCCTAAATAAGTAATATCATCGAAGGTGGATATCAATTTTGGTTTGAACTTAGAAAAGGCAGGAAATCTATACCGG
GTGTCCGTGTGGAATCTGTACTGGCTGTGAGCGTGTGTGAGGGAGAAAAATATAGTGTGTTGGGTGTGTGAGGAGTTAAATCGAATCGAAAGAAATGGGGCAAGAAGGGGGTTTGGATATGTCTCAGAGGAGAGTGGTATTGGTGCTTGTAGATGGGTTGGGAGATGTCGGGATACCATCTTTGGGATTTCACACTCCTC
TGCAAGTTGCACACACCCCTACCCTGGATGCTCTGGCTTGTGCTGGAGTCAGTGGACTCATGGATCCAGTGGATCCGGGCTTGGCATGTGGAAGTGACACTGCCCATCTTTCTTTATTGGGTTATGATCCGAGAATTTACTACAGAGGCAGGGGTGCATTTGAATCAATGGGAGCAGGTCTTGCCATGTCACCGGGCGAC
ATCGCCTTCAAGAGTAATTTTGCAACTATAGATGAGAAAACAGGGATTGTAACAAGCAGGAGGGCCGACAGACATTTTGAGGAGGAGGGTCCAATATTCTGCTCAGCATTGGATGGAATTAAGCTGTCTTCTTTTCCAGAATATGAGGTTAGAGTCAGATATGCAACAGAGCATAGGTGCGGCGTGGTTTTAAAAGGGCC
AAAATTAAGTGGGAACATTTCTGGCACAGATCCCCTAAAGGATAACCGACTATTGCTGGAGGCAACTGCTTTAGATGATACTGAAGAAGCAAAACATACAGCAGCAGTTGTTAATGAACTTTCAAAGGAGATGTCTCAGATTTTGATGTCACATCCATTGAACAAAACACGTGCTTCACAGGCGAAGAGCATTGCCAATG
TTGTGCTTTTACGTGGTTGTGGTATCCGGATTGAGGTGCCTACTTTTCAACAGAAGCATGGCCTCTGGCCATGCATGGTAGCACCTACCAAAATCATTGCAGGACTTGGACTATCTCTGGGTATTGACATTCTTCAGGCACCTGGAGCTACTGGAGACTACCGCACACTTTTGACATCAAAGGCAAAAGCAATAGCCAAG
GCACTTTCTGCTCCACTGGAACCACCACCTCCTGTTTTTGTGCCTGGAGAGGAGGATTGCAAAGATGGTCGTAGAGAAGGGTATGACTTTGGATTCCTGCACATAAAGGCTATTGATGATGCTGGACACGACAAGGCAACTCTGCTGAAAGTAAAAGCTTTTGAAGCTGTAGATAGGGCAGTTGGCCAGTTGGCCCGGCT
ACTCTGGCAGGCAGAATGCAGTGGTGTTGCCTGCTATTCATTGTGCATCACCGGAGACCATTCGACTCCTGTTGAATATGGTGACCACAGCTATGAACCTGTACCTTTTACCATTTGTCACCTGAAGGACTTTGTCAATGCAAGAGGTGGCGAATTAGCAGTGATGGAAGCCTCATTGGATCCATTCAATCTTCCTTCGG
TCAATGGTGATCTTGAGAAGGAAAAGCAAACTTACTTAACTTTTGAAGATGATAACCTACACCAGTGTAAACCTGTTTCTGGTGATTCCGTCGTCATATTCAATGAGATTGCTGCAGCTAGAGGATGCTTAGGCCGTTTTCAAGGATGTGAAATGATGGGAATTCTCAAAGCATATCTGCAGTTACCATGATCATCCTTT
TGTGGAATAATGGAGAAATCACTGTATAAGTTCCTTAGCATTGGCGAAAATATCTAGCTAATTTTACGCAGATGCAAAACAATTTTATTTACTGACTACACGGCAATTTCTGCTAAATACATTGCATATAGAAGTGATAAAATTTTCAGCGGGATTCTTCTTTTATAAATCAACTTCGATACATTGATGAGCGATAGTAT
ATGAGGGCCACTTGTGAGCTAAGAAAAATTCCTCTGGCATTGTTCTAGAACCATAATAAGCATAATGTAGTCAAATTATGAGAAACATGTCTCAATCATTTTATAATATTTTTAAATAGGAGTGATAAGGGCTTTCCTGATCACTATAATCCTTAGGCAGTTCTTTGTTCCGTAAACAATTACTCTTTTCTGACTTTGAA
GGTCAGTTGGTTGTTACATGGTTTCTTCTGTACCATTTCTAAACATTTTGCTTCTGTAGTGCTGATCCAAATTAGATTGTAACCTATGCTGCTCTACAGG
>TRINITY_DN38864_c0_g1_i1 from sample A7 / Example unspliced isoform:GCCAAATGTGTTTTTGAAATTATTGTGGCATCGCCATTGAGAATAAGTGCAAGGAATTTACCGAGCTGTAGATGAGGGGAATAAAGGTGGGCTAGAAAAAGAAGTCGCAGGTGTCAGGCCTGAAATCTTTATTTTTCACATGAGGTAAGTGGAGAGATAGGAGAAGGACACAAAGAAAATTATTGTGGGGGCACCATTGA
CACAGTATTTTGATTTTCGTATTCTTTGGTGTTTCTGGTGAAGTGGTTTTCTTGCTAGTTTGGGGATTCTTATACTCTGAAATCTCTTCCCCATTTGAGCTTGTTTAGATTGGATGCTAACAATTCCTAAATAAGTAATATCATCGAAGGTGGATATCAATTTTGGTTTGAACTTAGAAAAGGCAGGAAATCTATACCGG
GTGTCCGTGTGGAATCTGTACTGGCTGTGAGCGTGTGTGAGGGAGAAAAATATAGTGTGTTGGGTGTGTGAGGAGTTAAATCGAATCGAAAGAAATGGGGCAAGAAGGGGGTTTGGATATGTCTCAGAGGAGAGTGGTATTGGTGCTTGTAGATGGGTTGGGAGATGTCGGGATACCATCTTTGGGATTTCACACTCCTC
TGCAAGTTGCACACACCCCTACCCTGGATGCTCTGGCTTGTGCTGGAGTCAGTGGACTCATGGATCCAGTGGATCCGGGCTTGGCATGTGGAAGTGACACTGCCCATCTTTCTTTATTGGGTTATGATCCGAGAATTTACTACAGAGGCAGGGGTGCATTTGAATCAATGGGAGCAGGTCTTGCCATGTCACCGGGCGAC
ATCGCCTTCAAGAGTAATTTTGCAACTATAGATGAGAAAACAGGGATTGTAACAAGCAGGAGGGCCGACAGACATTTTGAGGAGGAGGGTCCAATATTCTGCTCAGCATTGGATGGAATTAAGCTGTCTTCTTTTCCAGAATATGAGGTTAGAGTCAGATATGCAACAGAGCATAGGTGCGGCGTGGTTTTAAAAGGGCC
AAAATTAAGTGGGAACATTTCTGGCACAGATCCCCTAAAGGATAACCGACTATTGCTGGAGGCAACTGCTTTAGATGATACTGAAGAAGCAAAACATACAGCAGCAGTTGTTAATGAACTTTCAAAGGAGATGTCTCAGATTTTGATGTCACATCCATTGAACAAAACACGTGCTTCACAGGCGAAGAGCATTGCCAATG
TTGTGCTTTTACGTGGTTGTGGTATCCGGATTGAGGTGCCTACTTTTCAACAGAAGCATGGCCTCTGGCCATGCATGGTAGCACCTACCAAAATCATTGCAGGACTTGGACTATCTCTGGGTATTGACATTCTTCAGGCACCTGGAGCTACTGGAGACTACCGCACACTTTTGACATCAAAGGCAAAAGCAATAGCCAAG
GCACTTTCTGCTCCACTGGAACCACCACCTCCTGTTTTTGTGCCTGGAGAGGAGGATTGCAAAGATGGTCGTAGAGAAGGGTATGACTTTGGATTCCTGCACATAAAGgtactcgctcctctggatgcattcatttttctaaatcatcatgcatagcatttgtaatcagtcaacttgtcaatttatactactgttggttg
tgttatgtagGCTATTGATGATGCTGGACACGACAAGGCAACTCTGCTGAAAGTAAAAGCTTTTGAAGCTGTAGATAGGGCAGTTGGCCAGTTGGCCCGGCTACTCTGGCAGGCAGAATGCAGTGGTGTTGCCTGCTATTCATTGTGCATCACCGGAGACCATTCGACTCCTGTTGAATATGGTGACCACAGCTATGAAC
CTGTACCTTTTACCATTTGTCACCTGAAGGACTTTGTCAATGCAAGAGGTGGCGAATTAGCAGTGATGGAAGCCTCATTGGATCCATTCAATCTTCCTTCGGTCAATGGTGATCTTGAGAAGGAAAAGCAAACTTACTTAACTTTTGAAGATGATAACCTACACCAGTGTAAACCTGTTTCTGGTGATTCCGTCGTCATA
TTCAATGAGATTGCTGCAGCTAGAGGATGCTTAGGCCGTTTTCAAGGATGTGAAATGATGGGAATTCTCAAAGCATATCTGCAGTTACCATGATCATCCTTTTGTGGAATAATGGAGAAATCACTGTATAAGTTCCTTAGCATTGGCGAAAATATCTAGCTAATTTTACGCAGATGCAAAACAATTTTATTTACTGACTA
CACGGCAATTTCTGCTAAATACATTGCATATAGAAGTGATAAAATTTTCAGCGGGATTCTTCTTTTATAAATCAACTTCGATACATTGATGAGCGATAGTATATGAGGGCCACTTGTGAGCTAAGAAAAATTCCTCTGGCATTGTTCTAGAACCATAATAAGCATAATGTAGTCAAATTATGAGAAACATGTCTCAATCA
TTTTATAATATTTTTAAATAGGAGTGATAAGGGCTTTCCTGATCACTATAATCCTTAGGCAGTTCTTTGTTCCGTAAACAATTACTCTTTTCTGACTTTGAAGGTCAGTTGGTTGTTACATGGTTTCTTCTGTACCATTTCTAAACATTTTGCTTCTGTAGTGCTGATCCAAATTAGATTGTAACCTATGCTGCTCTACA
GG