sp|Q8VWF6|SSL3_ARATH ----> Protein STRICTOSIDINE SYNTHASE-LIKE 3

Intron 1 GTTGGTTATT ... TGATATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	20.51	31	13	3
A2	28.21	14	5	6
A3	22.73	17	6	4
A4	24.53	20	10	3
A5	9.09	10	2	0
A6	13.29	124	19	19
A7	16.03	55	4	17
A8	23.38	59	8	28
A9	15.07	93	12	21
A10	12.06	62	2	15

>TRINITY_DN112911_c0_g3_i2 from sample A2 / Example spliced isoform

AGCGAAATGATGGCAGAAGCAGTCGGGATGAGAACGATATTGGCAGTTGCATTGCTAGGGCTGGCGATATATGCGAGCACGGACCCATTTCATCTGAGCCCCATTGCCAGTTTCCCCGACTTCAAACCATACGTAGTCGATTCCCCGCCATGGTCGCAGATTCCTCAGCCCAAGGACGACCTAAACAAACTTCAGAAGTC
CGAGATCAAGTTCTTGAACCAAGTCCAGGGACCAGAGAGTATCGCGTTCGATCCTGAGGGCAGAGGGCCTTACACTGGTGTAGCCGATGGCCGGATCATGTTCTGGAACGGTCATCAATGGTCGGAGTTCGCTATCACGTCACCCAACAGGTCGGAGGAGCTCTGCAAGCCTGGGAACAACCCCATGGCCAACATAAAGT
ACGAGCATATATGCGGTCGGCCTCTGGGCCTTCGGTTCAGCAAACGCACAGGCGATCTGTATATTGCAGATGCTTATTTTGGGCTGCTCGTGGTTGGACCTCAAGGAGGGCTGGCCACTCGCCTTGTCAGTGAAGTGGAGGGCATTCCCTTAAAGTTCACTAACGATCTTGACATAGATGAGGAGGGGATTGTGTATTTT
ACAGACAGCAGTACTGTTTTTCAAAGAAGGAACTTCGTTCAGTTGGCTTTTTCAGCAGAACCTTCAGGCAGAGTATTAAAATACAACCCACAAACCAAAGAAGCTAGCTTGCTGCTGAGTAATATTCAGCTTGCAAATGGGCTGTCTCTGAGTAAAGATGGATCCTTTTTTGTCTTCAGTGACACTTGTGCTGGAAGATT
GAAGAGGCATTGGTTGAAAGGCCCCAAAGCAGGCACAACAGACATCTTTGCAAATTTGCCAGGACATCCTGACAATGTGAGGACTAATGAGAAAGGAGAATTTTGGGTTGCCATACACTGCCGCCGTAACCTGTATTCCCATTTACTTGGTCTGTATCCTGGAGTCAGAAAAGCCATACTGAAGCTACCCATACCAACCA
AGTACCAATATTCTGTTTTCATTGGAGGAGGGCTTAGTGGATTAGTTATGAAGTACAGTCCAGATGGAAAAATTATTGAGATTTTGGAGGACAGAGAGGGAAAGGTTGTGAGAGCAGTGAGTGAGGTTGAAGAGAAGGATGGAAAGCTATGGATGGGATCTGTTTTGATGCCTTTTGTTGCTGTCTATTAATTAATAGCT
TTTATTGTTAAATCCTTGACAGGAGATGTGGTGTATCGATCAGTCTTTAAAATGGGCCAGAACTGCAGCATGTAGTAACATATTTCAAAACACAAGATGAAAATGGACAGTGATCTAAATAACTCACTGCTTGAAGCACATGACAACAATGGC

>TRINITY_DN112911_c0_g3_i3 from sample A2 / Example unspliced isoform:

AGCGAAATGATGGCAGAAGCAGTCGGGATGAGAACGATATTGGCAGTTGCATTGCTAGGGCTGGCGATATATGCGAGCACGGACCCATTTCATCTGAGCCCCATTGCCAGTTTCCCCGACTTCAAACCATACGTAGTCGATTCCCCGCCATGGTCGCAGATTCCTCAGCCCAAGGACGACCTAAACAAACTTCAGAAGTC
CGAGATCAAGTTCTTGAACCAAGTCCAGGGACCAGAGAGTATCGCGTTCGATCCTGAGGGCAGAGGGCCTTACACTGGTGTAGCCGATGGCCGGATCATGTTCTGGAACGGTCATCAATGGTCGGAGTTCGCTATCACGTCACCCAACAGGTCGGAGGAGCTCTGCAAGCCTGGGAACAACCCCATGGCCAACATAAAGT
ACGAGCATATATGCGGTCGGCCTCTGGGCCTTCGGTTCAGCAAACGCACAGGCGATCTGTATATTGCAGATGCTTATTTTGGGCTGCTCGTGGTTGGACCTCAAGGAGGGCTGGCCACTCGCCTTGTCAGTGAAGTGGAGGGCATTCCCTTAAAGTTCACTAACGATCTTGACATAGATGAGGAGGGGATTGTGTATTTT
ACAGACAGCAGTACTGTTTTTCAAAGAAGGAACTTCGTTCAGTTGGCTTTTTCAGCAGAACCTTCAGGCAGAGTATTAAAATACAACCCACAAACCAAAGAAGCTAGCTTGCTGCTGAGTAATATTCAGCTTGCAAATGGGCTGTCTCTGAGTAAAGATGGATCCTTTTTTGTCTTCAGTGACACTTGTGCTGGAAGgtt
ggttattgtttagtgctttcatgatttattcgtaaacagttattttctgtggcagaaaatttgtagtcgcattcagtttctagactgaacacatttctgaggtgatgggtattcttcctgaaacatatttgatatgcagATTGAAGAGGCATTGGTTGAAAGGCCCCAAAGCAGGCACAACAGACATCTTTGCAAATTTG
CCAGGACATCCTGACAATGTGAGGACTAATGAGAAAGGAGAATTTTGGGTTGCCATACACTGCCGCCGTAACCTGTATTCCCATTTACTTGGTCTGTATCCTGGAGTCAGAAAAGCCATACTGAAGCTACCCATACCAACCAAGTACCAATATTCTGTTTTCATTGGAGGAGGGCTTAGTGGATTAGTTATGAAGTACAG
TCCAGATGGAAAAATTATTGAGATTTTGGAGGACAGAGAGGGAAAGGTTGTGAGAGCAGTGAGTGAGGTTGAAGAGAAGGATGGAAAGCTATGGATGGGATCTGTTTTGATGCCTTTTGTTGCTGTCTATTAATTAATAGCTTTTATTGTTAAATCCTTGACAGGAGATGTGGTGTATCGATCAGTCTTTAAAATGGGCC
AGAACTGCAGCATGTAGTAACATATTTCAAAACACAAGATGAAAATGGACAGTGATCTAAATAACTCACTGCTTGAAGCACATGACAACAATGGC

Intron 2 GTTGGTTATT ... TGATATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	8.2	28	2	3
A2	21.43	11	3	3
A3	14.29	15	1	4
A4	7.69	18	1	2
A5	4.76	10	1	0
A6	9.16	114	12	11
A7	15.6	46	6	11
A8	19.67	49	2	22
A9	16.28	72	7	21
A10	12.15	47	1	12

>TRINITY_DN43153_c0_g1_i7 from sample A9 / Example spliced isoform

GGAAATCATGGCGGAAGGAGTGGGGATCCCAACATATGCTCTGGCACTCGCCATGATAGGCCTAGCAATATATTGTAGCACAGACCCATTTCATTATAGCCCTATTGCTGACTTCCCTGACTTCAAATCACACAGGATCGACTTACCGCCATGGTCACAGCTTCCCCTGGCTAACGACGACCAGAACAGACTCCAGAGGT
CTGAAATTAAGTTTTTAAACCAAGTCCAGGGACCCGAGAGTCTCGCGTTCGATCCTCAGGGAAGAGGGCCTTACACTGGTGTTGCAGATGGCCGGATCATGTTCTGGGACGGCCAGCAATGGTCGGAATTCGCTTATACGTCTCCCAACAGGTCTGAGGAGCTGTGTAAACCTGGGCCGAGCCCTATGTCGAACATAAAG
CACGAGCACATATGTGGTCGGCCTCTCGGTCTTCGGTTCGACAAGCGCACGGGCGATCTGTATATTGCAGATGCTTATTTTGGGTTGCTTGTGGTTGGTCCTCAAGGTGGGCTTGCCACTCGCCTTGTTAGTGAAGTGGATGGGGTTCCTTTGAAGTTCACTAATGATCTTGACATTGACAAGGAGCAGGGGATTGTGTA
TTTTACGGACAGCAGTTCTGTTTATCAGAGAAGGAACTTCATCCAGTTGGTTTTTTCAGCAGAGACTTCAGGCAGAATATTAAAATACAACCCACAAACCAAGGAAGCTAGCGTGCTGCTTAGTAATGTTCAGTTTCCGAATGGGCTGTCTCTGAGTAAAGATGGATCCTTTTTTGTCTTCAGTGACTGTTGTGTTGGAA
GACTGAAGAGGTATTGGTTGAAAGGCCCCAAAGCAGGCACAACAGACATCTTTGCAGTTTTGCCAGGGCATCCCGACAATGTGAGGGTTAATGAGAAAGGAGAATTTTGGGTTGCC

>TRINITY_DN43153_c0_g1_i5 from sample A9 / Example unspliced isoform:

GGAAATCATGGCGGAAGGAGTGGGGATCCCAACATATGCTCTGGCACTCGCCATGATAGGCCTAGCAATATATTGTAGCACAGACCCATTTCATTATAGCCCTATTGCTGACTTCCCTGACTTCAAATCACACAGGATCGACTTACCGCCATGGTCACAGCTTCCCCTGGCTAACGACGACCAGAACAGACTCCAGAGGT
CTGAAATTAAGTTTTTAAACCAAGTCCAGGGACCCGAGAGTCTCGCGTTCGATCCTCAGGGAAGAGGGCCTTACACTGGTGTTGCAGATGGCCGGATCATGTTCTGGGACGGCCAGCAATGGTCGGAATTCGCTTATACGTCTCCCAACAGGTCTGAGGAGCTGTGTAAACCTGGGCCGAGCCCTATGTCGAACATAAAG
CACGAGCACATATGTGGTCGGCCTCTCGGTCTTCGGTTCGACAAGCGCACGGGCGATCTGTATATTGCAGATGCTTATTTTGGGTTGCTTGTGGTTGGTCCTCAAGGTGGGCTTGCCACTCGCCTTGTTAGTGAAGTGGATGGGGTTCCTTTGAAGTTCACTAATGATCTTGACATTGACAAGGAGCAGGGGATTGTGTA
TTTTACGGACAGCAGTTCTGTTTATCAGAGAAGGAACTTCATCCAGTTGGTTTTTTCAGCAGAGACTTCAGGCAGAATATTAAAATACAACCCACAAACCAAGGAAGCTAGCGTGCTGCTTAGTAATGTTCAGTTTCCGAATGGGCTGTCTCTGAGTAAAGATGGATCCTTTTTTGTCTTCAGTGACTGTTGTGTTGGAA
GgttggttattatttgctgctttagcgatttattctgtaacgtagctgatgtgtagttgcattcaatttctgggcagcgacaaattttgaagaaaaagcatattaatcctgaaacttaactgatatgcagACTGAAGAGGTATTGGTTGAAAGGCCCCAAAGCAGGCACAACAGACATCTTTGCAGTTTTGCCAGGGCAT
CCCGACAATGTGAGGGTTAATGAGAAAGGAGAATTTTGGGTTGCCCTGCACTGCCGCCGTAATCTGTATTCCCATTTGCTTGGTCTGTATCCTGGATTCAGAAAAGCCACACTAAAGCTACCCTTTCCGACAAAATACCATTATTTAGCGCACATTGGAGGAAGACTTCATGCAGCACTTGTGAAGTACAGTCCGGATGG
AGAACTCGTTGAGATATTGGAGGACAGAGAGGGAAAGGTTGTGAGAGCAGTGAGTGAAGTTGAAGAGAAGGATGGAAAGCTATGGATGGGATCTGTCTTGATGCCTTTTGTGGCCGTGTATTAATGGCCTTTTTTTGTTAAGATGCAGAGTTTATCAGTCTTGAAAAG

Intron 3 GTCGGAGGAG ... ATCAAAGAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	88.46	3	21	25
A2	66.67	7	19	9
A3	64.18	12	16	27
A4	67.57	12	24	26
A5	88.24	2	24	6
A6	67.02	31	55	71
A7	67.68	16	18	49
A8	80.22	9	33	40
A9	73.15	29	52	106
A10	76.32	9	27	31

>TRINITY_DN44574_c0_g1_i5 from sample A6 / Example spliced isoform

ATCCCAACCCTGCGTGATACTGTACTGTCCCAGCTGACCGCTCTAACCACCCGTCTACATACAACCGCTCGACCATATCATTATATATTATTGAGCTGTACCCACAAGCATGGCGCAAGCGAAATGATGGCAGAAGCAGTCGGGATGAGAACGATATTGGCAGTTGCATTGCTGGGGCTCGCGATATATGCGAGCACGGA
CCCATTTCATCTGAGCCCCATTGCCAGTTTCCCTGACTTCAAACCATATGTAGTCGATTCCCCGCCATGGTCGCAGATTCCTCAGCCCAAGGACGACCTAAACAAACTTCAGAAGTCCGAGATCAAGTTCTTGAACCAAGTCCAGGGACCAGAGAGTATCGCGTTCGATCCTGAGGGCAGAGGGCCTTACACTGGTGTAG
CCGATGGCCGGATCATGTTCTGGAACGGTCATCAATGGTCGGAGTTCGCTTTCACGTCACCCAACAGGAACTTCGTTCAGTTGGCTTTTTCAGCAGAACCTTCAGGCAGAGTATTAAAATACAACCCACAAACCAAAGAATCTAGCTTGCTGCTGAGTAATATTCAGCTTGCAAATGGGCTGTCTCTGAGTAAAGATGGA
TCCTTTTTTGTCTTCAGTGACACTTGTGCTGGAAGATTGAAGAGGCATTGGTTGAAAGGCCCCAAAGCAGGCACAACAGACATCTTTGCAAATTTGCCAGGACATCCTGACAATGTGAGGACTAATGAGAAAGGAGAATTTTGGGTTGCCATACACTGCCGCCGTAACCTGTATTCCCATTTGCTTGGTCTGTATCCTGG
ATTCAGAAAAGCCATACTGAAGCTACCCATACCAACCAAGTACCAATATTCTGTTTTCATTGGAGGAGGGCTTAGTGGATTAGTTATGAAGTACAGTCCAGATGGAAAAATTCTTGAGATTTTGGAGGACAGAGAGGGAAAGGTTGTGAGAGCAGTGAGTGAAGTTGAAGAGAAGGATGGAAAGCTATGGATGGGATCTG
TTTTGATGCCTTTTGTTGCTGTCTATTAATTAATAGCTTTTATTGTTAAATCCTTGACAGGAGATGTGGTGTATCGATCAGTCTTTAAAATGGGCCAGAACTGCAGCATGTAGTAACATATTTCAAAACACAAGATGAAAATGGACAGTGATCTGAATAACTCACTGCTTGAAGCACATGACAACAATGGCTATATACTT
GACACTGACTGTTCAATTTATCTATGAAGAATTGGGATTTAACAATGTCTGTGACTTGAATAAACAATATATTCC

>TRINITY_DN44574_c0_g1_i4 from sample A6 / Example unspliced isoform:

ATCCCAACCCTGCGTGATACTGTACTGTCCCAGCTGACCGCTCTAACCACCCGTCTACATACAACCGCTCGACCATATCATTATATATTATTGAGCTGTACCCACAAGCATGGCGCAAGCGAAATGATGGCAGAAGCAGTCGGGATGAGAACGATATTGGCAGTTGCATTGCTGGGGCTCGCGATATATGCGAGCACGGA
CCCATTTCATCTGAGCCCCATTGCCAGTTTCCCTGACTTCAAACCATATGTAGTCGATTCCCCGCCATGGTCGCAGATTCCTCAGCCCAAGGACGACCTAAACAAACTTCAGAAGTCCGAGATCAAGTTCTTGAACCAAGTCCAGGGACCAGAGAGTATCGCGTTCGATCCTGAGGGCAGAGGGCCTTACACTGGTGTAG
CCGATGGCCGGATCATGTTCTGGAACGGTCATCAATGGTCGGAGTTCGCTTTCACGTCACCCAACAGgtcggaggagctctgcaagcctgggagcaaccccatggccaacatcaagtacgagcatatatgcggtcggcctctgggccttcggttcagcaaacgcacgggcgatctgtatattgcagatgcttattttggg
ctgctcgtggttggacctcaaggagggctggccactcgccttgtcagtgaagtggagggcattcccttaaagttcactaacgatcttgacatagatgaggaggggattgtgtattttacagacagcagtactgtttatcaaagaagGAACTTCGTTCAGTTGGCTTTTTCAGCAGAACCTTCAGGCAGAGTATTAAAATA
CAACCCACAAACCAAAGAATCTAGCTTGCTGCTGAGTAATATTCAGCTTGCAAATGGGCTGTCTCTGAGTAAAGATGGATCCTTTTTTGTCTTCAGTGACACTTGTGCTGGAAGATTGAAGAGGCATTGGTTGAAAGGCCCCAAAGCAGGCACAACAGACATCTTTGCAAATTTGCCAGGACATCCTGACAATGTGAGGA
CTAATGAGAAAGGAGAATTTTGGGTTGCCATACACTGCCGCCGTAACCTGTATTCCCATTTGCTTGGTCTGTATCCTGGATTCAGAAAAGCCATACTGAAGCTACCCATACCAACCAAGTACCAATATTCTGTTTTCATTGGAGGAGGGCTTAGTGGATTAGTTATGAAGTACAGTCCAGATGGAAAAATTCTTGAGATT
TTGGAGGACAGAGAGGGAAAGGTTGTGAGAGCAGTGAGTGAAGTTGAAGAGAAGGATGGAAAGCTATGGATGGGATCTGTTTTGATGCCTTTTGTTGCTGTCTATTAATTAATAGCTTTTATTGTTAAATCCTTGACAGGAGATGTGGTGTATCGATCAGTCTTTAAAATGGGCCAGAACTGCAGCATGTAGTAACATAT
TTCAAAACACAAGATGAAAATGGACAGTGATCTGAATAACTCACTGCTTGAAGCACATGACAACAATGGCTATATACTTGACACTGACTGTTCAATTTATCTATGAAGAATTGGGATTTAACAATGTCTGTGACTTGAATAAACAATATATTCC