sp|Q9FF86|DCR_ARATH ----> BAHD acyltransferase DCR

Intron 1 GTTAACAATT ... TTGAATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	71.43	2	7	3
A2	71.43	1	3	2
A3	100	0	4	3
A4	88.89	1	3	13
A5	77.78	2	12	2
A6	100	0	4	2
A7	81.82	1	8	1
A8	83.33	1	4	6
A9	60	5	11	4
A10	61.11	7	20	2

>TRINITY_DN43140_c2_g1_i3 from sample A9 / Example spliced isoform

TAAATTTAGACTGGAAGGGCCATAGGATAAAAAAAGTTGAATAATACTGTTAAACCCGACATAAGGGGTTTAGCATGTAAAATTGCCCGAACTGACCTCAACCACAAGCAAAGGGACAAAATGACCATCCACGTTAATAGCGCCATCGAGAGCAAACAATCGAAATCGTTGATGGGTTTGTGTACGCAGCGGACAAAGAT
CCTGAAATTCTTGATAACTGCACTGCGGTTGTGTATGGAGCGTTCTGATAGCGAGATCCTCAAATTCTTGAGCACTGCACATTGATGATCTTCAACGGTAACCTCAATGCTCTGATGGAGGAGTGCGTCATTGTAGCGGTGTTCAGAGCGATTCCGCGGCTGCTTTTATTAAAGATATCAGTGGAGATTATAAACTGCCC
TCTTCATGATATTGTTGCCGCCCTCACGTTCTCTCTCTCGCTGCCTGCATGGCGTCAAGATTCATGGCCTTCCTGGTCACTGCTCAAACGGTTCCCATTAGATCTGTCCCTTTCAATGACTGTTTAACGCCCCTGGCTATTTTCATGCCCGCGACATGTGACTATTGGCAGTGCTTTGCTTCGTGGAGACATTTTTGTTA
TGCTC

>TRINITY_DN43140_c2_g1_i2 from sample A9 / Example unspliced isoform:

TAAATTTAGACTGGAAGGGCCATAGGATAAAAAAAGTTGAATAATACTGTTAAACCCGACATAAGGGGTTTAGCATGTAAAATTGCCCGAACTGACCTCAACCACAAGCAAAGGGACAAAATGACCATCCACGTTAATAGCGCCATCGAGAGCAAACAATCGAAATCGTTGATGGGTTTGTGTACGCAGCGGACAAAGAT
CCTGAAATTCTTGATAACTGCACTGCGGTTGTGTATGGAGCGTTCTGATAGCGAGATCCTCAAATTCTTGAGCACTGCACATTGATGATCTTCAACGGTAACCTCAATGCTCTGATGGAGGAGTGCGTCATTGTAGCGGTGTTCAGAGCGATTCCGCGGCTGCTTTTATTAAAGATATCAGTGGAGATTATAAACTGCCC
TCTTCATGATATTGTTGCCGCCCTCACGTTCTCTCTCTCGCTGCCTGCATGGCGTCAAGATTCATGGCCTTCCTGGTCACTGCTCAAACGGTTCCCATTAGATCTGTCCCTTTCAATGgttaacaattgtctcttaatgtttgtggagtagtgtcatctattgtggatcttttaccttcctctatgcttgtggttgtttt
ttagttgtcttcgttagggttttggatggttttggatgcagcataataataatttttaattgaatgcagACTGTTTAACGCCCCTGGCTATTTTCATGCCCGCGACATGTGACTATTGGCAGTGCTTTGCTTCGTGGAGACATTTTTGTTATGCTC

Intron 2 GTAAATCTGA ... ATTTGTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	52	6	9	4
A2	33.33	2	2	0
A3	48.15	7	9	4
A4	100	0	0	3
A5	50	1	0	2
A6	33.33	2	2	0
A7	46.67	4	2	5
A8	25	6	1	3
A9	28	9	5	2
A10	25	21	11	3

>TRINITY_DN119089_c0_g3_i1 from sample A3 / Example spliced isoform

AGTGCCTGGAAGGATGAGAATATAATTGGGTGCTTTGAATTACTCCAGTTGGCTCTGTCCTTTACCATCAAGATTGTCTGCTTGCTGAAGTAAAATACTTTTTCTCTCAGCACAGGCAGGGAGAATCTGTGGATCGTTTGGCTTATGGGGAGGTTGAGAGTGATGCGGGATCCTTGTATGTCGTAACGCCGGCTGTGAAA
GGGCGGTTGATAGACCGTGGCCACTCCTCTGCAGAGATCTACCCATGAGTTTATAAAATGCCAGAGTGATGTCCCGTCTAGGACGGCGTGGTTTATTGTGAAGCCTAGCGCGACTCCATCCCCCAGGTTAGTCAGCTGATCATAATTAAATTTAGACTGGAAGGGCCATAGGATAAAAAAAGTTGAATAATACTGTTAAA
CCCGACATAAGGGGTTTAGCATGTAAAATTGCCCGAACTGACCTCAACCACAAGCAAAGGGACAAAATGACCATCCACGTTAATAGCGCCATCGAGAGCAAACAATCGAAATCGTTGATGGGTTTGTGTACGCAGCGGACAAAGATCCTGAAATTCTTGATAACTGCACTGCGGTTGTGTATGGAGCGTTCTGATAGCGA
GATCCTCAAATTCTTGAGCACTGCACATTGATGATCTTCAACGGTAACCACAATGCTCTGATCGAGGAGTGCGTCATTGTAGCGGTGTTCAGAGCGATTCCGCGGCTGCTTTTATTAAAGATATCAGTGGAGATTATAAACTGCCCTCTTCATGATATTGTTGCCGCCCTCACGTTCTCTCTCTCGCTGCCTGCATGGCG
TCAAGATTCATGGCCTTCCTGGTCACTGCTCAAACGGTTCCCATTAGATCTGTA

>TRINITY_DN119089_c0_g3_i2 from sample A3 / Example unspliced isoform:

AGTGCCTGGAAGGATGAGAATATAATTGGGTGCTTTGAATTACTCCAGTTGGCTCTGTCCTTTACCATCAAGATTGTCTGCTTGCTGAAGTAAAATACTTTTTCTCTCAGCACAGGCAGGGAGAATCTGTGGATCGTTTGGCTTATGGGGAGGTTGAGAGTGATGCGGGATCCTTGTATGTCGTAACGCCGGCTGTGAAA
GGGCGGTTGATAGACCGTGGCCACTCCTCTGCAGAGATCTACCCATGAGTTTATAAAATGCCAGAGTGATGTCCCGTCTAGGACGGCGTGGTTTATTGTGAAGCCTAGCGCGACTCCATCCCCCAGGTTAGTCAGCTGATCATAATTAAATTTAGACTGGAAGGGCCATAGGATAAAAAAAGTTGAATAATACTGTTAAA
CCCGACATAAGGGGTTTAGCATGTAAAATTGCCCGAACTGACCTCAACCACAAGCAAAGGGACAAAATGACCATCCACGTTAATAGCGCCATCGAGAGCAAACAATCGgtaaatctgattccctgtagtactttcttcctgttttgattagggtttcgttagattctttaatttttttatttgtgcagAAATCGTTGATG
GGTTTGTGTACGCAGCGGACAAAGATCCTGAAATTCTTGATAACTGCACTGCGGTTGTGTATGGAGCGTTCTGATAGCGAGATCCTCAAATTCTTGAGCACTGCACATTGATGATCTTCAACGGTAACCTCAATGCTCTGATGGAGGAGTGCGTCATTGTAGCGGTGTTCAGAGCGATTCCGCGGCTGCTTTTATTAAAG
ATATCAGTGGAGATTATAAACTGCCCTCTTCATGATATTGTTGCCGCCCTCACGTTCTCTCTCTCGCTGCCTGCATGGCGTCAAGATTCATGGCCTTCCTGGTCACTGCTCAAACGGTTCCCATTAGATCTGTA