sp|Q9LL84|DNLI4_ARATH ----> DNA ligase 4


Intron 1 GTAAGTATAT ... GTCATTTTAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A12.384112
A211.542330
A323.082060
A401400
A511.11810
A60400
A718.18920
A80100
A90300
A1023.081030



>TRINITY_DN123336_c0_g1_i9 from sample A1 / Example spliced isoform
TAGCTAACTCCCGCCGCCTTCCCTCGGAAGCTTGTTGCGAGTTAATGTAGAAATACAAACACAAGCTGTCCATTCGTCTGGTGTGTTTTTGTAAGGCACTGTAGTGGAGTGGAGAATGTCGGACGCAAGGGTGAATTTCCGTGTTCTGTGCGAGATGCTGGAGGCAATCGTACGAAGCAAGAAGGGTGCGATGAAGCGGA
AGCATGTACGCACGTTTTTGGAGCACGTGTACAGGGAGGGGGAGTATTTTAGTGCAATTCGTCTGATAATGCCGGGACTGGACAGAGAACGGGGCGCATATAAGCTGAAGGAAGCGCAACTCGCCAGACATTTGACAGAAGCGTTGGGGATCTCAAAGGATTCCCACGACGCCCAAAAGCTCTTAAATTGGAGGAAGGGC
GGAGAGAAAGCAGGTGCCAACGCGGGCAATTTTCCCATAGTCGCAGTAGAGGTTTTGTACCAAAGGCAAAGGACGGTTTCTGGTGGCTTAAAGATTAAAGATGTAAATGATTTACTTGATCGATTGGCAGCAGCTGAAAATAGAGAGGACAAAACTGCCATTCTTGCAGAGCTTATCAACAAAACAAATGCCATGGAAAT
GAAGTGGATTTTGATGATCATTCTTAAAGATTTGAAGTTGGGAATGAGCGAGAAAAGTCTCTTCCGTGAGTTTCATCCAGATGCTGAAGATATGTTCAATGTGACTTGTGACCTAAAGATGGTCTGTGAAAAGCTTAAAGATCGGAATGAAAGGTACAAAAGGCAGGACATTGAAGTTGGAAAAGCAGTGCGCCCACAAT
TAGCTTCAAGAGTGCCAGATGTCGAGACTGCATGGAAAAAAATGCACGGCAAACAAGTGGTTGTTGAGTGCAAATTTGATGGTGACCGCATTCAAATACACAAGAATGGGAATCAAGTCCACTTCTTTTCAAGGAACTTCTTTAATCACATTGAGTATGAACCTGGGATGTCGAGCGTCATTCTTGAGAATGTTCAAGTG
GATAAATGTATCCTTGATGGTGAAATGCTTGTCTGGGACAAGGGTACCAATCGTTTCGCAGACTTTGGAACAAATCAAGAAATAGCAAAGTCTGCTAGGGAAGGTTTAGAGACCAATCAACAGCTCTGTTATGTGGTTTTTGACATTCTTTATGCTGGGGACACTAGTGTGATCCACCAAAGCTTGCGTGAACGCCATAA
ACTTCTTCGTGAGGTTGTGAAGTCTTTAAAGGGTCGATTAGAGCTGTTGTTGCCTGAAGGCAGTTTGAATTCATGTTGCTCTTTTGGTGAACCTCGATGGTCGTTTATTGCTAGCAGTGTTGAAGAAGTTGCCAAATTTTTTCAAGAAACTACTGAAAAAAGGGATGAAGGCATAATTTTGAAGGATTTAGATTCCAAAT
GGGAACCTAGTGACCGCAGTGGAAAGTGGATAAAGTTGAAACCAGATTATATAAACACTGGATCCGATCTTGATGTTCTCATCATAGGTGGTTATTTTGGATCTGGACGCCATGGAGGAGAGGTAGCACAGTTTTTACTGGGTCTTGCACAGAATTCAGCTTCCAGTGGTTATCCGACAAGATTTCTCTCTTTTTGCAGA
GTTGGATCAGGCCTTTCTGATGAAGAGAGTGATGTTCTTGTTAGCAAACTTAAACCATATTTCAGACGACATGAAAATAATTCCAAGGTTCCAAGCTTTTATACAGTGACAAACAATGCAAAGGAGAGGCCTGATGTTTGGATTGATCCACCAGAGAAGTCTATTATACTTGAGATAACGAGTGATGTCCGGATGATTAA
ATCAGAGGTCTTTGCTTCTCCTTTTAGTTTGCGCTTCCCTCGCATACGTAGGGTGCGATATGACAAGCCTTGGTATGAATGCCTTGATGTACAGAGTAAGGTCTCTTCGACTATAATTTTACAGAAGCTATCATTGTTTATGTAACATGTTTATTTTAGAAAAAATGTCATGGGTGGGTTTCACATCATTCAAGAACAAT
ACTTATTTTAACATAAGCTTGTGATTGTGATAGCATTTATGGACATAGTACAGTCGAGAAGTGGTACTACAGAGACTGCTGATTACCATGCAGATTTGGATCGACTGAAAACAAAATGTAAAAGGCATGCTTCCGAGGGAGTGAAGAAGATTCTTACTGTTGTACCATCTCATATGCTTAGAACAGATGTGTCTAATGTT
AAAAGGGAGACATTGATATTTACAAATCTGATGTTCTACTTTGTAAATGTTCCTTCAGACTATTCCCTGGAGCATTTTCACAAAATGGTGGTGGAACATGGGGGCTCATTCTCAA


>TRINITY_DN123336_c0_g1_i10 from sample A1 / Example unspliced isoform:
TAGCTAACTCCCGCCGCCTTCCCTCGGAAGCTTGTTGCGAGTTAATGTAGAAATACAAACACAAGCTGTCCATTCGTCTGGTGTGTTTTTGTAAGGCACTGTAGTGGAGTGGAGAATGTCGGACGCAAGGGTGAATTTCCGTGTTCTGTGCGAGATGCTGGAGGCAATCGTACGAAGCAAGAAGGGTGCGATGAAGCGGA
AGCATGTACGCACGTTTTTGGAGCACGTGTACAGGGAGGGGGAGTATTTTAGTGCAATTCGTCTGATAATGCCGGGACTGGACAGAGAACGGGGCGCATATAAGCTGAAGGAAGCGCAACTCGCCAGACATTTGACAGAAGCGTTGGGGATCTCAAAGGATTCCCACGACGCCCAAAAGCTCTTAAATTGGAGGAAGGGC
GGAGAGAAAGCAGGTGCCAACGCGGGCAATTTTCCCATAGTCGCAGTAGAGGTTTTGTACCAAAGGCAAAGGACGGTTTCTGGTGGCTTAAAGATTAAAGATGTAAATGATTTACTTGATCGATTGGCAGCAGCTGAAAATAGAGAGGACAAAACTGCCATTCTTGCAGAGCTTATCAACAAAACAAATGCCATGGAAAT
GAAGTGGATTTTGATGATCATTCTTAAAGATTTGAAGTTGGGAATGAGCGAGAAAAGTCTCTTCCGTGAGTTTCATCCAGATGCTGAAGATATGTTCAATGTGACTTGTGACCTAAAGATGGTCTGTGAAAAGCTTAAAGATCGGAATGAAAGGTACAAAAGGCAGGACATTGAAGTTGGAAAAGCAGTGCGCCCACAAT
TAGCTTCAAGAGTGCCAGATGTCGAGACTGCATGGAAAAAAATGCACGGCAAACAAGTGGTTGTTGAGTGCAAATTTGATGGTGACCGCATTCAAATACACAAGAATGGGAATCAAGTCCACTTCTTTTCAAGGAACTTCTTTAATCACATTGAGTATGAACCTGGGATGTCGAGCGTCATTCTTGAGAATGTTCAAGTG
GATAAATGTATCCTTGATGGTGAAATGCTTGTCTGGGACAAGGGTACCAATCGTTTCGCAGACTTTGGAACAAATCAAGAAATAGCAAAGTCTGCTAGGGAAGGTTTAGAGACCAATCAACAGCTCTGTTATGTGGTTTTTGACATTCTTTATGCTGGGGACACTAGTGTGATCCACCAAAGCTTGCGTGAACGCCATAA
ACTTCTTCGTGAGGTTGTGAAGTCTTTAAAGGGTCGATTAGAGCTGTTGTTGCCTGAAGGCAGTTTGAATTCATGTTGCTCTTTTGgtaagtatattttaccttatcttttggattgatatgttgttcgttttttgttgtttagttaactacaatttgtagttgcatgtcaggtgaaataaagttgacataggacattgg
tctcattgtttttagcttttgttcctcatttgcatatgcaattgtttggggaagggagccttatgtttcatttttcagcacattgatgttttcaaaggctgattattttgcttgctattgtcattttag
GTGAACCTCGATGGTCGTTTATTGCTAGCAGTGTTGAAGAAGTTGCCAAATTTTTTCAAGAAACTACTGAA
AAAAGGTATACTCCAAAGCATTTGTTCAACTACTTTTGAAAATGATGTTGCATCACTGGAATTTATCCTTTTAATTAATGTTTGTGGTTGCAGTTTGCTAGATATATTGGTTGTAATTGGACTTAGG




Intron 2 GTAAGGTCTC ... TACCATGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A1755315
A262.8613222
A363.64417
A4803012
A5657013
A6-1000
A750101
A8100001
A9100008
A1066.67102



>TRINITY_DN119621_c1_g1_i11 from sample A2 / Example spliced isoform
GTTTGGGGATCACTATTTTTGGGATCTTGATGTTTCAGATCTGAGACAGGTCTTTGCTTCTCCTTTTAGTTTGCGCTTCCCTCGCATACGTAGGGTGCGATATGACAAGCCTTGGTATGAATGCCTTGATGTACAGAATTTGGATCGACTGAAAACAAAATGTAAAAGGCATGCTTCCGAGGGAGTGAAGAAGATTCTTA
CTGTTGTACCATCTCATATGCTTAGAACAGATGTGTCTAATGTTAAAAGGGAGACATTGATATTTACAAATCTGATGTTCT


>TRINITY_DN119621_c1_g1_i1 from sample A2 / Example unspliced isoform:
GTATGAATGCCTTGATGTACAGAgtaaggtctcttcgactataattttacagaagctatcattgtttatgtaacatgtttattttagaaaaaatgtcatgggtgggtttcacatcattcaagaacaatacttattttaacataagcttgtgattgtgatagcatttatggacatagtacagtcgagaagtggtactacag
agactgctgattaccatgcag
ATTTGGATCGACTGAAAACAAAATGTAAAAGGCATGCTTCCGAGGGAGTGAAGAAGATTCTTACTGTTGTACCATCTCATATGCTTAGAACAGATGTGTCTAATGTTAAAAGGGAGACATTGATATTTACAAATCTGATGTTCT




Intron 3 GTAAGGTCTC ... ATTGTGATAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A130.95297.413
A221.21267.17
A38.33221.72
A422.22214.46
A527.78132.25
A6-1000
A72530.71
A820401
A928.57152.26
A101093.61



>TRINITY_DN123336_c0_g1_i1 from sample A1 / Example spliced isoform
TAGCTAACTCCCGCCGCCTTCCCTCGGAAGCTTGTTGCGAGTTAATGTAGAAATACAAACACAAGCTGTCCATTCGTCTGGTGTGTTTTTGTAAGGCACTGTAGTGGAGTGGAGAATGTCGGACGCAAGGGTGAATTTCCGTGTTCTGTGCGAGATGCTGGAGGCAATCGTACGAAGCAAGAAGGGTGCGATGAAGCGGA
AGCATGTACGCACGTTTTTGGAGCACGTGTACAGGGAGGGGGAGTATTTTAGTGCAATTCGTCTGATAATGCCGGGACTGGACAGAGAACGGGGCGCATATAAGCTGAAGGAAGCGCAACTCGCCAGACATTTGACAGAAGCGTTGGGGATCTCAAAGGATTCCCACGACGCCCAAAAGCTCTTAAATTGGAGGAAGGGC
GGAGAGAAAGCAGGTGCCAACGCGGGCAATTTTCCCATAGTCGCAGTAGAGGTTTTGTACCAAAGGCAAAGGACGGTTTCTGGTGGCTTAAAGATTAAAGATGTAAATGATTTACTTGATCGATTGGCAGCAGCTGAAAATAGAGAGGACAAAACTGCCATTCTTGCAGAGCTTATCAACAAAACAAATGCCATGGAAAT
GAAGTGGATTTTGATGATCATTCTTAAAGATTTGAAGTTGGGAATGAGCGAGAAAAGTCTCTTCCGTGAGTTTCATCCAGATGCTGAAGATATGTTCAATGTGACTTGTGACCTAAAGATGGTCTGTGAAAAGCTTAAAGATCGGAATGAAAGGTACAAAAGGCAGGACATTGAAGTTGGAAAAGCAGTGCGCCCACAAT
TAGCTTCAAGAGTGCCAGATGTCGAGACTGCATGGAAAAAAATGCACGGCAAACAAGTGGTTGTTGAGTGCAAATTTGATGGTGACCGCATTCAAATACACAAGAATGGGAATCAAGTCCACTTCTTTTCAAGGAACTTCTTTAATCACATTGAGTATGAACCTGGGATGTCGAGCGTCATTCTTGAGAATGTTCAAGTG
GATAAATGTATCCTTGATGGTGAAATGCTTGTCTGGGACAAGGGTACCAATCGTTTCGCAGACTTTGGAACAAATCAAGAAATAGCAAAGTCTGCTAGGGAAGGTTTAGAGACCAATCAACAGCTCTGTTATGTGGTTTTTGACATTCTTTATGCTGGGGACACTAGTGTGATCCACCAAAGCTTGCGTGAACGCCATAA
ACTTCTTCGTGAGGTTGTGAAGTCTTTAAAGGGTCGATTAGAGCTGTTGTTGCCTGAAGGCAGTTTGAATTCATGTTGCTCTTTTGGTGAACCTCGATGGTCGTTTATTGCTAGCAGTGTTGAAGAAGTTGCCAAATTTTTTCAAGAAACTACTGAAAAAAGGGATGAAGGCATAATTTTGAAGGATTTAGATTCCAAAT
GGGAACCTAGTGACCGCAGTGGAAAGTGGATAAAGTTGAAACCAGATTATATAAACACTGGATCCGATCTTGATGTTCTCATCATAGGTGGTTATTTTGGATCTGGACGCCATGGAGGAGAGGTAGCACAGTTTTTACTGGGTCTTGCACAGAATTCAGCTTCCAGTGGTTATCCGACAAGATTTCTCTCTTTTTGCAGA
GTTGGATCAGGCCTTTCTGATGAAGAGAGTGATGTTCTTGTTAGCAAACTTAAACCATATTTCAGACGACATGAAAATAATTCCAAGGTTCCAAGCTTTTATACAGTGACAAACAATGCAAAGGAGAGGCCTGATGTTTGGATTGATCCACCAGAGAAGTCTATTATACTTGAGATAACGAGTGATGTCCGGATGATTAA
ATCAGAGGTCTTTGCTTCTCCTTTTAGTTTGCGCTTCCCTCGCATACGTAGGGTGCGATATGACAAGCCTTGGTATGAATGCCTTGATGTACAGACATTTATGGACATAGTACAGTCGAGAAGTGGTACTACAGAGACTGCTGATTACCATGCAGATTTGGATCGACTGAAAACAAAATGTAAAAGGCATGCTTCCGAGG
GAGTGAAGAAGATTCTTACTGTTGTACCATCTCATATGCTTAGAACAGATGTGTCTAATGTTAAAAGGGAGACATTGATATTTACAAATCTGATGTTCTACTTTGTAAATGTTCCTTCAGACTATTCCCTGGAGCATTTTCACAAAATGGTGGTGGAACATGGGGGCTCATTCTCAA


>TRINITY_DN123336_c0_g1_i9 from sample A1 / Example unspliced isoform:
TAGCTAACTCCCGCCGCCTTCCCTCGGAAGCTTGTTGCGAGTTAATGTAGAAATACAAACACAAGCTGTCCATTCGTCTGGTGTGTTTTTGTAAGGCACTGTAGTGGAGTGGAGAATGTCGGACGCAAGGGTGAATTTCCGTGTTCTGTGCGAGATGCTGGAGGCAATCGTACGAAGCAAGAAGGGTGCGATGAAGCGGA
AGCATGTACGCACGTTTTTGGAGCACGTGTACAGGGAGGGGGAGTATTTTAGTGCAATTCGTCTGATAATGCCGGGACTGGACAGAGAACGGGGCGCATATAAGCTGAAGGAAGCGCAACTCGCCAGACATTTGACAGAAGCGTTGGGGATCTCAAAGGATTCCCACGACGCCCAAAAGCTCTTAAATTGGAGGAAGGGC
GGAGAGAAAGCAGGTGCCAACGCGGGCAATTTTCCCATAGTCGCAGTAGAGGTTTTGTACCAAAGGCAAAGGACGGTTTCTGGTGGCTTAAAGATTAAAGATGTAAATGATTTACTTGATCGATTGGCAGCAGCTGAAAATAGAGAGGACAAAACTGCCATTCTTGCAGAGCTTATCAACAAAACAAATGCCATGGAAAT
GAAGTGGATTTTGATGATCATTCTTAAAGATTTGAAGTTGGGAATGAGCGAGAAAAGTCTCTTCCGTGAGTTTCATCCAGATGCTGAAGATATGTTCAATGTGACTTGTGACCTAAAGATGGTCTGTGAAAAGCTTAAAGATCGGAATGAAAGGTACAAAAGGCAGGACATTGAAGTTGGAAAAGCAGTGCGCCCACAAT
TAGCTTCAAGAGTGCCAGATGTCGAGACTGCATGGAAAAAAATGCACGGCAAACAAGTGGTTGTTGAGTGCAAATTTGATGGTGACCGCATTCAAATACACAAGAATGGGAATCAAGTCCACTTCTTTTCAAGGAACTTCTTTAATCACATTGAGTATGAACCTGGGATGTCGAGCGTCATTCTTGAGAATGTTCAAGTG
GATAAATGTATCCTTGATGGTGAAATGCTTGTCTGGGACAAGGGTACCAATCGTTTCGCAGACTTTGGAACAAATCAAGAAATAGCAAAGTCTGCTAGGGAAGGTTTAGAGACCAATCAACAGCTCTGTTATGTGGTTTTTGACATTCTTTATGCTGGGGACACTAGTGTGATCCACCAAAGCTTGCGTGAACGCCATAA
ACTTCTTCGTGAGGTTGTGAAGTCTTTAAAGGGTCGATTAGAGCTGTTGTTGCCTGAAGGCAGTTTGAATTCATGTTGCTCTTTTGGTGAACCTCGATGGTCGTTTATTGCTAGCAGTGTTGAAGAAGTTGCCAAATTTTTTCAAGAAACTACTGAAAAAAGGGATGAAGGCATAATTTTGAAGGATTTAGATTCCAAAT
GGGAACCTAGTGACCGCAGTGGAAAGTGGATAAAGTTGAAACCAGATTATATAAACACTGGATCCGATCTTGATGTTCTCATCATAGGTGGTTATTTTGGATCTGGACGCCATGGAGGAGAGGTAGCACAGTTTTTACTGGGTCTTGCACAGAATTCAGCTTCCAGTGGTTATCCGACAAGATTTCTCTCTTTTTGCAGA
GTTGGATCAGGCCTTTCTGATGAAGAGAGTGATGTTCTTGTTAGCAAACTTAAACCATATTTCAGACGACATGAAAATAATTCCAAGGTTCCAAGCTTTTATACAGTGACAAACAATGCAAAGGAGAGGCCTGATGTTTGGATTGATCCACCAGAGAAGTCTATTATACTTGAGATAACGAGTGATGTCCGGATGATTAA
ATCAGAGGTCTTTGCTTCTCCTTTTAGTTTGCGCTTCCCTCGCATACGTAGGGTGCGATATGACAAGCCTTGGTATGAATGCCTTGATGTACAGAgtaaggtctcttcgactataattttacagaagctatcattgtttatgtaacatgtttattttagaaaaaatgtcatgggtgggtttcacatcattcaagaacaat
acttattttaacataagcttgtgattgtgatag
CATTTATGGACATAGTACAGTCGAGAAGTGGTACTACAGAGACTGCTGATTACCATGCAGATTTGGATCGACTGAAAACAAAATGTAAAAGGCATGCTTCCGAGGGAGTGAAGAAGATTCTTACTGTTGTACCATCTCATATGCTTAGAACAGATGTGTCTAATGTT
AAAAGGGAGACATTGATATTTACAAATCTGATGTTCTACTTTGTAAATGTTCCTTCAGACTATTCCCTGGAGCATTTTCACAAAATGGTGGTGGAACATGGGGGCTCATTCTCAA




Intron 4 GTGAGCAAAA ... TATTGGACAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A19.549.520
A225.174.521
A343.044.507.5
A436.82955.5
A50100
A6-1000
A701200
A80100
A90200
A100400



>TRINITY_DN107168_c0_g1_i8 from sample A4 / Example spliced isoform
CTAATATTAGGAACTTCATTTATTTTCTTCGAACAAAACTGAGTTCTAGAAACTGTAGGAATCAAGTACCAAGCTGCTGTGAAGCATGGAGATGTCATTCATTACTCTTGGGTGATTGATTGCTGTAAAGAAAAGACCCTCTTGCCATTACGACCAAAGTACTTTCTTAGCCTTTCAGACTTATCCAAGGAGAAAATGAA
AGAGGATATTGATGCGTTTGGGGATCACTATTTTTGGGATCTTGATGTTTCAGATCTGAGACAGATGTATCCTTGATGGTGAAATGCTTGTCTGGGACAAGGGTAGCAATCGTTTCGCAGACTTTGGAACAAATCAAGAAATAGCAAAGTCTGCTAGGGAAGGTTTAGAGACCAATCAACAGCTCTGTTATGTGGTTTTT
GACATTCTTTATGCTGGGGACACTAGTGTGATCCACCAAAGCTTGCGTGAACGCCATAAACTTCTTCGTGAGGTTGTGAAGTCTTTAAAGGGTCGATTAGAGCTGTTGTTGCCTGAAGGCAGTTTGAATTCATGTTGCTCTTTTGGTGAACCTCGATGGTCGTTTATTGCTAGCAGTGTTGAAGAAGTTGCCAAATATTT
TCAAGAAACTACTGAAAAAAGGGATGAAGGCATAATTTTGAAGGATTTAGATTCCAAATGGGAACCTAGTGACCGCAGTGGAAAGTGGATAAAGTTGAAACCAGATTATATAAACACTGGATCCGATCTTGATGTTCTCATCATAGGTGGTTATTTTGGATCTGGACGCCATGGAGGAGAGGTAGCACAGTTTTTACTGG
GTCTTGCACAGAATTCAGCTTCCAGTGGTTATCCGACAAGGTCCTCAGTTCTTTGCGATGGTTGAATGCATAAATTTGTTTGA


>TRINITY_DN107168_c0_g1_i1 from sample A4 / Example unspliced isoform:
GGTATTACCTTTTTGATGGCTGAAGATGTATCCTTGATGGTGAAATGCTTGTCTGGGACAAGGGTAGCAATCGTTTCGCAGACTTTGGAACAAATCAAGAAATAGgtgagcaaaagataaatcttcttttaagtttgttctggttatttttaagatacttgtcatttgctaattttgatttccctaccttacaaacttta
tattggacag
CAAAGTCTGCTAGGGAAGGTTTAGAGACCAATCAACAGGTATGTTTTTTTTCTGTTTAAAATCTTACCCCATTCAATATATGATGTTGCAATTTTCCCCCAAAATTGTAAATTGAAAATTTAA