sp|Q9LDK9|APBLA_ARATH ----> Beta-adaptin-like protein A
Intron 1 GTTTATGAAC ... GTCAGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.49 | 19 | 33 | 36 |
| A2 | 73.33 | 10 | 32 | 23 |
| A3 | 65.08 | 22 | 46 | 36 |
| A4 | 51.4 | 26 | 34 | 21 |
| A5 | 69.7 | 5 | 9 | 14 |
| A6 | 56.67 | 13 | 18 | 16 |
| A7 | 62.96 | 15 | 27 | 24 |
| A8 | 75 | 5 | 15 | 15 |
| A9 | 67.86 | 9 | 20 | 18 |
| A10 | 68.54 | 14 | 30 | 31 |
>TRINITY_DN106705_c7_g1_i4 from sample A4 / Example spliced isoformACTCCGCAACCTCGTTTTCTTCTTCGTTTCAGTATTTTCATTGCTACCGGGGAGGAGGAAACGATGGCTCCCCCGGCTCAATCGCAGCGTCTGCCACCTCCATCACAGCCTTCCGGGAAAGGGGAAGTGGGGGAACTGAAAACGCAGCTGAGACAGTTAGCAGGGAGCAGAGCACCGGGAGCTGAAGATCTAAAGAGGGA
GCTATACAAGAAGGTCATATCATATATGACCGTAGGGATCGATGTCTCATCCCTCTTCAGTGAAATGGTGATGTGCTCTGCAACATCAGACATTGTGCTGAAGAAGATGTGTTATCTCTACGTGGGAAATTATGCAAGGGTTCATCCTGATTTGGCCCTGCTCACCATTAATTTCCTCCAGAAGGACTGCCAGGACGAAG
ATCCCATGATCAGAGGGCTCGCTCTTAAGAGTCTCTGCTCTCTCAGTGTCAAAAATCTCGTTGAGTATCTCGTGGGTCCTCTGAGAGCGGGACTTCAGGACAGTAACAGCTATGTCAGGACAGTGGCAGCCATTGGGGTTCTCAAGTTATACCATATTTCTCCCACCACGTGCACCGAATCTGATTTCCCCGTGGCACTG
AAGGCTCTTCTGCTTCACGATCCCGATGCCCAGGTTGTTGCCAATTGCTTGTCATCACTTCAAGAAATTTTGACCTTGGAAGGAAACTCTTCTGAGGAAGCATCTAGAGAGAAGGAGTTGCTTTTGAGTAAGCCAGTGATCTATGCTCTTTTGAATAGGATCAGGGAGTTCAGTGAGTGGGCTCAATGTCTCATACTTGA
CTTAGTTGTCAAGTATATTCCTTCTGAAAGCAGTGAGATATTTGACATTATGAATCTACTGGAGGATAGGCTACAGCATGCAAATAGTGCTGTAGTCTTAGCTACAATCAATTTGTTTCTTCACTTAACAATTTCCATGGCTGATGTGCACCAGCAGGTAGCTCAGAACAGTCATATGCAGTTTTGAGCCATCTACATCT
GCTGGTGACGCGTGCTCCAATACTGTTTTCATCAGATTATAAGCATTTCTATTGTCGCTACAGTGACCCTTCATATGTGAAGAAATTGAAGCTTGAGATGCTTACAGCTGTGGCAAATGAGAGTAATACATATGATATTGTGACGGAACTCAGTGAATATGCTGCAAATGTTGACGTGGCCATTGCAAGAGAGTCTGTCC
GAGCTGTTGGACAAATTGCATTGCAGCAGTATGACGTCAATGCTATTGTTGACCGCCTCCTTCAGTTCCTAGAGATGGAAAAGGATTATATCACTGCAGAAACTCTGGTTCTCGTGAAAGACCTTCTGAGGAAGTATCCGCAGTGGAGTCATGACTGTATAGCAGTTGTTGGCAACGTTAGCAGCAGAAACGTTCCAGAA
CCCAAGGCTAAAGCTGCCCTGGTTTGGATGTTGGGAGAATATTCTCAGGATATGCTCGATGCCCCTTATGTTCTTGAAAGTCTAATTGACAGCTGGGATGAAGAAGACTCAGCAGAGGTTCGGTTGCATTTGCTGACTGCAGTGACGAAGTGCTTTTTCAAGCGGCCTCCAGAAACCCAGAAGGCCTTGGGGTCTGCCCT
GGCAGCTGGGTTGGCTGATGCACATCAGGACGTGCATGACAGAGCATTATTTTACTACAGACTTTTGCAACATGATGTGACCATAGCAGAGCGTGTAATTAATCCACCTAAACAAGCAGTTTCTGTATTTGCCGATACTCAGAGCAGTGAAGTCAAGGACCGTATATTTGATGAGTTCAACAGTCTTTCTGTTATTTATC
GTGAGCCTTCATATATGTTTATTGATAAGGAACATCGAGGACCATTTGAATTTTCAGAAGATATGGGAACTTTGGCTACCACAACAGGATCTGATGACAATGTCCTCCCGAGCCAAAGAGTTGAAGCAACTGACAATGATCTATTACTAAGTGCATCAGAAAAGGAGGAAAGCCGGGTTCCTGCTACGAATGGGTCTTTA
TCATATAATGCTCCTGACTACAATGGCAGTTCTACTGCCTTTGTCTCCCGTTCTCCATCTCCTACAACTGTTCCTCCTCAATCTGAAATTGCAGTTACAAGTACAGCACCTCCAGCATCTATTCCACAGGTGGGTTCTGTCATTGATGATTTGCTCGGGTTGGGCCCTGTCATGACTCCACCACCAGTTCCTGCATTAAA
ACTTAGTCCTAAAACAACACTTGATCCTGCCACCTTTCAGCGGAAATGGGGTCAGCTTCCAATTGCTCTAACACAGGTTTGTTTTTTCTCTATCTTAGCTTTATTCAGCTGCAATTTTTTTGTAATTTTTTCTTAATCTCAGCAAACTCAGACCCCAACCTGGTTTCAAGTCTCAATAAATCATT
>TRINITY_DN106705_c7_g1_i2 from sample A4 / Example unspliced isoform:ACTCCGCAACCTCGTTTTCTTCTTCGTTTCAGTATTTTCATTGCTACCGGGGAGGAGGAAACGATGGCTCCCCCGGCTCAATCGCAGCGTCTGCCACCTCCATCACAGCCTTCCGGGAAAGGGGAAGTGGGGGAACTGAAAACGCAGCTGAGACAGTTAGCAGGGAGCAGAGCACCGGGAGCTGAAGATCTAAAGAGGGA
GCTATACAAGAAGGTCATATCATATATGACCGTAGGGATCGATGTCTCATCCCTCTTCAGTGAAATGGTGATGTGCTCTGCAACATCAGACATTGTGCTGAAGAAGATGTGTTATCTCTACGTGGGAAATTATGCAAGGGTTCATCCTGATTTGGCCCTGCTCACCATTAATTTCCTCCAGAAGGACTGCCAGGACGAAG
ATCCCATGATCAGAGGGCTCGCTCTTAAGAGTCTCTGCTCTCTCAGTGTCAAAAATCTCGTTGAGTATCTCGTGGGTCCTCTGAGAGCGGGACTTCAGGACAGTAACAGCTATGTCAGGACAGTGGCAGCCATTGGGGTTCTCAAGTTATACCATATTTCTCCCACCACGTGCACCGAATCTGATTTCCCCGTGGCACTG
AAGGCTCTTCTGCTTCACGATCCCGATGCCCAGGTTGTTGCCAATTGCTTGTCATCACTTCAAGAAATTTTGACCTTGGAAGGAAACTCTTCTGAGGAAGCATCTAGAGAGAAGGAGTTGCTTTTGAGTAAGCCAGTGATCTATGCTCTTTTGAATAGGATCAGGGAGTTCAGTGAGTGGGCTCAATGTCTCATACTTGA
CTTAGTTGTCAAGTATATTCCTTCTGAAAGCAGTGAGATATTTGACATTATGAATCTACTGGAGGATAGGCTACAGCATGCAAATAGTGCTGTAGTCTTAGCTACAATCAATTTGTTTCTTCACTTAACAATTTCCATGGCTGATGTGCACCAGCAGgtttatgaacgaatcaaggctcctttgctcactttggtcagtt
cagGTAGCTCAGAACAGTCATATGCAGTTTTGAGCCATCTACATCTGCTGGTGACGCGTGCTCCAATACTGTTTTCATCAGATTATAAGCATTTCTATTGTCGCTACAGTGACCCTTCATATGTGAAGAAATTGAAGCTTGAGATGCTTACAGCTGTGGCAAATGAGAGTAATACATATGATATTGTGACGGAACTCAGT
GAATATGCTGCAAATGTTGACGTGGCCATTGCAAGAGAGTCTGTCCGAGCTGTTGGACAAATTGCATTGCAGCAGTATGACGTCAATGCTATTGTTGACCGCCTCCTTCAGTTCCTAGAGATGGAAAAGGATTATATCACTGCAGAAACTCTGGTTCTCGTGAAAGACCTTCTGAGGAAGTATCCGCAGTGGAGTCATGA
CTGTATAGCAGTTGTTGGCAACGTTAGCAGCAGAAACGTTCCAGAACCCAAGGCTAAAGCTGCCCTGGTTTGGATGTTGGGAGAATATTCTCAGGATATGCTCGATGCCCCTTATGTTCTTGAAAGTCTAATTGACAGCTGGGATGAAGAAGACTCAGCAGAGGTTCGGTTGCATTTGCTGACTGCAGTGACGAAGTGCT
TTTTCAAGCGGCCTCCAGAAACCCAGAAGGCCTTGGGGTCTGCCCTGGCAGCTGGGTTGGCTGATGCACATCAGGACGTGCATGACAGAGCATTATTTTACTACAGACTTTTGCAACATGATGTGACCATAGCAGAGCGTGTAATTAATCCACCTAAACAAGCAGTTTCTGTATTTGCCGATACTCAGAGCAGTGAAGTC
AAGGACCGTATATTTGATGAGTTCAACAGTCTTTCTGTTATTTATCGTGAGCCTTCATATATGTTTATTGATAAGGAACATCGAGGACCATTTGAATTTTCAGAAGATATGGGAACTTTGGCTACCACAACAGGATCTGATGACAATGTCCTCCCGAGCCAAAGAGTTGAAGCAACTGACAATGATCTATTACTAAGTGC
ATCAGAAAAGGAGGAAAGCCGGGTTCCTGCTACGAATGGGTCTTTATCATATAATGCTCCTGACTACAATGGCAGTTCTACTGCCTTTGTCTCCCGTTCTCCATCTCCTACAACTGTTCCTCCTCAATCTGAAATTGCAGTTACAAGTACAGCACCTCCAGCATCTATTCCACAGGTGGGTTCTGTCATTGATGATTTGC
TCGGGTTGGGCCCTGTCATGACTCCACCACCAGTTCCTGCATTAAAACTTAGTCCTAAAACAACACTTGATCCTGCCACCTTTCAGCGGAAATGGGGTCAGCTTCCAATTGCTCTAACACAGGAGTATCCTTTGACAGCTCAAGGAACTGCTGCCCTAACATCACCTCAGATCCTCCTCCGTCATATGCAGGCATATTCA
ATTCAGTGCATTGCATCAGGTGGTCAAGCTCCAAATTTTAAATTTTTTTTCTTTGCACAAAATTCAGATGCACCTCCAGGTGCCAGTCTCTTTCTTGTCGAGTGCCTTGTAAATACATCATCTTCAAAAGCTCATGTAAAAGTCAAAGCAGACGAGTCCAGTTCATCCCAAGATTTTGCCGGATTGTTTCAGTCAGCATT
ACAAAAGTTTGGTGTCTCTTAGAGTTCATCATGAATATGGATATAATGTTTTCATGGTTGACAATTCTTTTGCAGAAGTTGAGTTGTATAAAAAAATGGATGGAATGCTATCTCATGCATTCCTTATAAAAACACAAAGCAGCGTGCCATTTTTTTTTAACCATTGGTAAGTTGTTTCATTCATAGAAGACAATTAATCA
TGAATCTGGATATAAGGTTATCACGAAAGACATTTCTTTTGCAGAAGTTGAGTTGT
Intron 2 GTTGTTGCCA ... TTTTGAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.69 | 34 | 48 | 57 |
| A2 | 67.24 | 19 | 45 | 33 |
| A3 | 55.7 | 35 | 49 | 39 |
| A4 | 62.42 | 28 | 59 | 34 |
| A5 | 52.24 | 16 | 17 | 18 |
| A6 | 63.22 | 16 | 37 | 18 |
| A7 | 68.22 | 17 | 36 | 37 |
| A8 | 58.97 | 8 | 15 | 8 |
| A9 | 51.22 | 30 | 44 | 19 |
| A10 | 69.49 | 9 | 23 | 18 |
>TRINITY_DN36223_c0_g1_i6 from sample A8 / Example spliced isoformATCACACCCTCGATAAGTTCAATATAAATAAAATTCTTGAAGGTCCCTTTTCCATTTCTCTACTCCGCAACCTCGTTTTCTTCTTCGTTTCAGTATTTTCATTGCTACCGGGGAGGAGGAAACGATGGCTCCCCCGGCTCAATCGCAGCGTCTGCCACCTCCATCACAGCCTTCCGGGAAAGGGGAAGTGGGGGAACTGA
AAACGCAGCTGAGACAGTTAGCAGGGAGCAGAGCACCGGGAGCTGAAGATCTAAAGAGGGAGCTATACAAGAAGGTCATATCATATATGACCGTAGGGATCGATGTCTCATCCCTCTTCAGTGAAATGGTGATGTGCTCTGCAACATCAGACATTGTGCTGAAGAAGATGTGTTATCTCTACGTGGGAAATTATGCAAGG
GTTCATCCTGATTTGGCCCTGCTCACCATTAATTTCCTCCAGAAGGACTGCCAGGACGAAGATCCCATGATCAGAGGGCTCGCTCTTAAGAGTCTCTGCTCTCTCAGTGTCAAAAATCTCGTTGAGTATCTCGTGGGTCCTCTGAGAGCGGGACTTCAGGACAGTAACAGCTATGTCAGGACAGTGGCAGCCATTGGGGT
TCTCAAGTTATACCATATTTCTCCCACCACGTGCACCGAATCTGATTTCCCCGTGGCACTGAAGGCTCTTCTGCTTCACGATCCCGATGCCCAGGATCAGGGAGTTCAGTGAGTGGGCTCAATGTCTCATACTTGACTTAGTTGTCAAGTATATTCCTTCTGAAAGCAGTGAGATATTTGACATTATGAATCTACTGGAG
GATAGGCTACAGCATGCAAATAGTGCTGTAGTCTTAGCTACAATCAATTTGTTTCTTCACTTAACAATTTCCATGGCTGATGTGCACCAGCAGGTTTATGAACGAATCAAGGCTCCTTTGCTCACTTTGGTCAGTTCAGGTAGCTCAGAACAGTCATATGCAGTTTTGAGCCATCTACATCTGCTGGTGACGCGTGCTCC
AATACTGTTTTCATCAGATTATAAGCATTTCTATTGTCGCTACAGTGACCCTTCATATGTGAAGAAATTGAAGCTTGAGATGCTTACAGCTGTGGCAAATGAGAGTAATACATATGATATTGTGACGGAACTCAGTGAATATGCTGCAAATGTTGACGTGGCCATTGCAAGAGAGTCTGTCCGAGCTGTTGGACAAATTG
CATTGCAGCAGTATGACGTCAATGCTATTGTTGACCGCCTCCTTCAGTTCCTAGAGATGGAAAAGGATTATATCACTGCAGAAACTCTGGTTCTCGTGAAAGACCTTCTGAGGAAGTATCCGCAGTGGAGTCATGACTGTATAGCAGTTGTTGGCAACGTTAGCAGCAGAAACGTTCCAGAACCCAAGGCTAAAGCTGCC
CTGGTTTGGATGTTGGGAGAATATTCTCAGGATATGCTCGATGCCCCTTATGTTCTTGAAAGTCTAATTGACAGCTGGGATGAAGAAGACTCAGCAGAGGTTCGGTTGCATTTGCTGACTGCAGTGACGAAGTGCTTTTTCAAGCGGCCTCCAGAAACCCAGAAGGCCTTGGGGTCTGCCCTGGCAGCTGGGTTGGCTGA
TGCACATCAGGACGTGCATGACAGAGCATTATTTTACTACAGACTTTTGCAACATGATGTGACCATAGCAGAGCGTGTAATTAATCCACCTAAACAAGCAGTTTCTGTATTTGCCGATACTCAGAGCAGTGAAGTCAAGGACCGTATATTTGATGAGTTCAACAGTCTTTCTGTTATTTATCGTGAGCCTTCATATATGT
TTATTGATAAGGAACATCGAGGACCATTTGAATTTTCAGAAGATATGGGAACTTTGGCTACCACAACAGGATCTGATGACAATGTCCTCCCGAGCCAAAGAGTTGAAGCAACTGACAATGATCTATTACTAAGTGCATCAGAAAAGGAGGAAAGCCGGGTTCCTGCTACGAATGGGTCTTTATCATATAATGCTCCTGAC
TACAATGGCAGTTCTACTGCCTTTGTCTCCCGTTCTCCATCTCCTACAACTGTTCCTCCTCAATCTGAAATTGCAGTTACAAGTACAGCACCTCCAGCATCTATTCCACAGGTGGGTTCTGTCATTGATGATTTGCTCGGGTTGGGCCCTGTCATGACTCCACCACCAGTTCCTGCATTAAAACTTAGTCCTAAAACAAC
ACTTGATCCTGCCACCTTTCAGCGGAAATGGGGTCAGCTTCCAATTGCTCTAACACAGGAGTATCCTTTGACAGCTCAAGGAACTGCTGCCCTAACATCACCTCAGATCCTCCTCCGTCATATGCAGGCATATTCAATTCAGTGCATTGCATCAGGTGGTCAAGCTCCAAATTTTAAATTTTTTTTCTTTGCACAAAATT
CAGATGCACCTCCAGGTGCCAGTCTCTTTCTTGTCGAGTGCCTTGTAAATACATCATCTTCAAAAGCTCATGTAAAAGTCAAAGCAGACGAGTCCAGTTCATCCCAAGATTTTGCCGGATTGTTTCAGTCAGCATTACAAAAGTTTGGTGTCTCTTAGAGTTCATCATGAATATGGATATAATGTTTTCATGGTTGACAA
TTCTTTTGCAGAAGTTGAGTTGTATAAAAAAATGGATGGAATGCTATCTCATGCATTCCTTATAAAAACACAAAGCAGCGTGCCATTTTTTTTTAACCATTGGTAAGTTGTTTCATTCATAGAAGACAATTAATCATGAATCTGGATATAAGGTTATCACGAAAGACATTTCTTTTGCAGAAGTTGAGTTGTATAATAAA
AGGATGGAGTGCTATTTCATGTATTTCTTATAAAAACACAAAAGAAGTATGCAATTTTTTTTTTGATCATTCATTAGAATTTAGTGGTTTCATTTTATTGAAAAGATCCATTGATAGCCTCATCCTAAAGCATAAAAAGATTAAAGTCTTTATTTTGAGAAACTAAAAGCTGTTATTGAATTTTCTGTGACTAACAAGTA
TTCCATCA
>TRINITY_DN36223_c0_g1_i2 from sample A8 / Example unspliced isoform:ATCACACCCTCGATAAGTTCAATATAAATAAAATTCTTGAAGGTCCCTTTTCCATTTCTCTACTCCGCAACCTCGTTTTCTTCTTCGTTTCAGTATTTTCATTGCTACCGGGGAGGAGGAAACGATGGCTCCCCCGGCTCAATCGCAGCGTCTGCCACCTCCATCACAGCCTTCCGGGAAAGGGGAAGTGGGGGAACTGA
AAACGCAGCTGAGACAGTTAGCAGGGAGCAGAGCACCGGGAGCTGAAGATCTAAAGAGGGAGCTATACAAGAAGGTCATATCATATATGACCGTAGGGATCGATGTCTCATCCCTCTTCAGTGAAATGGTGATGTGCTCTGCAACATCAGACATTGTGCTGAAGAAGATGTGTTATCTCTACGTGGGAAATTATGCAAGG
GTTCATCCTGATTTGGCCCTGCTCACCATTAATTTCCTCCAGAAGGACTGCCAGGACGAAGATCCCATGATCAGAGGGCTCGCTCTTAAGAGTCTCTGCTCTCTCAGTGTCAAAAATCTCGTTGAGTATCTCGTGGGTCCTCTGAGAGCGGGACTTCAGGACAGTAACAGCTATGTCAGGACAGTGGCAGCCATTGGGGT
TCTCAAGTTATACCATATTTCTCCCACCACGTGCACCGAATCTGATTTCCCCGTGGCACTGAAGGCTCTTCTGCTTCACGATCCCGATGCCCAGgttgttgccaattgcttgtcatcacttcaagaaattttgaccttggaaggaaactcttctgaggaagcatctagagagaaggagttgcttttgagtaagccagtga
tctatgctcttttgaatagGATCAGGGAGTTCAGTGAGTGGGCTCAATGTCTCATACTTGACTTAGTTGTCAAGTATATTCCTTCTGAAAGCAGTGAGATATTTGACATTATGAATCTACTGGAGGATAGGCTACAGCATGCAAATAGTGCTGTAGTCTTAGCTACAATCAATTTGTTTCTTCACTTAACAATTTCCATG
GCTGATGTGCACCAGCAGGTTTATGAACGAATCAAGGCTCCTTTGCTCACTTTGGTCAGTTCAGGTAGCTCAGAACAGTCATATGCAGTTTTGAGCCATCTACATCTGCTGGTGACGCGTGCTCCAATACTGTTTTCATCAGATTATAAGCATTTCTATTGTCGCTACAGTGACCCTTCATATGTGAAGAAATTGAAGCT
TGAGATGCTTACAGCTGTGGCAAATGAGAGTAATACATATGATATTGTGACGGAACTCAGTGAATATGCTGCAAATGTTGACGTGGCCATTGCAAGAGAGTCTGTCCGAGCTGTTGGACAAATTGCATTGCAGCAGTATGACGTCAATGCTATTGTTGACCGCCTCCTTCAGTTCCTAGAGATGGAAAAGGATTATATCA
CTGCAGAAACTCTGGTTCTCGTGAAAGACCTTCTGAGGAAGTATCCGCAGTGGAGTCATGACTGTATAGCAGTTGTTGGCAACGTTAGCAGCAGAAACGTTCCAGAACCCAAGGCTAAAGCTGCCCTGGTTTGGATGTTGGGAGAATATTCTCAGGATATGCTCGATGCCCCTTATGTTCTTGAAAGTCTAATTGACAGC
TGGGATGAAGAAGACTCAGCAGAGGTTCGGTTGCATTTGCTGACTGCAGTGACGAAGTGCTTTTTCAAGCGGCCTCCAGAAACCCAGAAGGCCTTGGGGTCTGCCCTGGCAGCTGGGTTGGCTGATGCACATCAGGACGTGCATGACAGAGCATTATTTTACTACAGACTTTTGCAACATGATGTGACCATAGCAGAGCG
TGTAATTAATCCACCTAAACAAGCAGTTTCTGTATTTGCCGATACTCAGAGCAGTGAAGTCAAGGACCGTATATTTGATGAGTTCAACAGTCTTTCTGTTATTTATCGTGAGCCTTCATATATGTTTATTGATAAGGAACATCGAGGACCATTTGAATTTTCAGAAGATATGGGAACTTTGGCTACCACAACAGGATCTG
ATGACAATGTCCTCCCGAGCCAAAGAGTTGAAGCAACTGACAATGATCTATTACTAAGTGCATCAGAAAAGGAGGAAAGCCGGGTTCCTGCTACGAATGGGTCTTTATCATATAATGCTCCTGACTACAATGGCAGTTCTACTGCCTTTGTCTCCCGTTCTCCATCTCCTACAACTGTTCCTCCTCAATCTGAAATTGCA
GTTACAAGTACAGCACCTCCAGCATCTATTCCACAGGTGGGTTCTGTCATTGATGATTTGCTCGGGTTGGGCCCTGTCATGACTCCACCACCAGTTCCTGCATTAAAACTTAGTCCTAAAACAACACTTGATCCTGCCACCTTTCAGCGGAAATGGGGTCAGCTTCCAATTGCTCTAACACAGGAGTATCCTTTGACAGC
TCAAGGAACTGCTGCCCTAACATCACCTCAGATCCTCCTCCGTCATATGCAGGCATATTCAATTCAGTGCATTGCATCAGGTGGTCAAGCTCCAAATTTTAAATTTTTTTTCTTTGCACAAAATTCAGATGCACCTCCAGGTGCCAGTCTCTTTCTTGTCGAGTGCCTTGTAAATACATCATCTTCAAAAGCTCATGTAA
AAGTCAAAGCAGACGAGTCCAGTTCATCCCAAGATTTTGCCGGATTGTTTCAGTCAGCATTACAAAAGTTTGGTGTCTCTTAGAGTTCATCATGAATATGGATATAATGTTTTCATGGTTGACAATTCTTTTGCAGAAGTTGAGTTGTATAAAAAAATGGATGGAATGCTATCTCATGCATTCCTTATAAAAACACAAAG
CAGCGTGCCATTTTTTTTTAACCATTGGTAAGTTGTTTCATTCATAGAAGACAATTAATCATGAATCTGGATATAAGGTTATCACGAAAGACATTTCTTTTGCAGAAGTTGAGTTGTATAATAAAAGGATGGAGTGCTATTTCATGTATTTCTTATAAAAACACAAAAGAAGTATGCAATTTTTTTTTTGATCATTCATT
AGAATTTAGTGGTTTCATTTTATTGAAAAGATCCATTGATAGCCTCATCCTAAAGCATAAAAAGATTAAAGTCTTTATTTTGAGAAACTAAAAGCTGTTATTGAATTTTCTGTGACTAACAAGTATTCCATCA
Intron 3 GTTGTTATCA ... GTGGTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.51 | 71 | 57 | 48 |
| A2 | 37.25 | 32 | 15 | 23 |
| A3 | 45.05 | 50 | 34 | 48 |
| A4 | 42.57 | 58 | 37 | 49 |
| A5 | 39.62 | 16 | 7 | 14 |
| A6 | 46.41 | 97 | 74 | 94 |
| A7 | 41.44 | 130 | 79 | 105 |
| A8 | 42.39 | 106 | 67 | 89 |
| A9 | 42.25 | 108 | 77 | 81 |
| A10 | 41.28 | 96 | 53 | 82 |
>TRINITY_DN106705_c7_g1_i4 from sample A4 / Example spliced isoformACTCCGCAACCTCGTTTTCTTCTTCGTTTCAGTATTTTCATTGCTACCGGGGAGGAGGAAACGATGGCTCCCCCGGCTCAATCGCAGCGTCTGCCACCTCCATCACAGCCTTCCGGGAAAGGGGAAGTGGGGGAACTGAAAACGCAGCTGAGACAGTTAGCAGGGAGCAGAGCACCGGGAGCTGAAGATCTAAAGAGGGA
GCTATACAAGAAGGTCATATCATATATGACCGTAGGGATCGATGTCTCATCCCTCTTCAGTGAAATGGTGATGTGCTCTGCAACATCAGACATTGTGCTGAAGAAGATGTGTTATCTCTACGTGGGAAATTATGCAAGGGTTCATCCTGATTTGGCCCTGCTCACCATTAATTTCCTCCAGAAGGACTGCCAGGACGAAG
ATCCCATGATCAGAGGGCTCGCTCTTAAGAGTCTCTGCTCTCTCAGTGTCAAAAATCTCGTTGAGTATCTCGTGGGTCCTCTGAGAGCGGGACTTCAGGACAGTAACAGCTATGTCAGGACAGTGGCAGCCATTGGGGTTCTCAAGTTATACCATATTTCTCCCACCACGTGCACCGAATCTGATTTCCCCGTGGCACTG
AAGGCTCTTCTGCTTCACGATCCCGATGCCCAGGTTGTTGCCAATTGCTTGTCATCACTTCAAGAAATTTTGACCTTGGAAGGAAACTCTTCTGAGGAAGCATCTAGAGAGAAGGAGTTGCTTTTGAGTAAGCCAGTGATCTATGCTCTTTTGAATAGGATCAGGGAGTTCAGTGAGTGGGCTCAATGTCTCATACTTGA
CTTAGTTGTCAAGTATATTCCTTCTGAAAGCAGTGAGATATTTGACATTATGAATCTACTGGAGGATAGGCTACAGCATGCAAATAGTGCTGTAGTCTTAGCTACAATCAATTTGTTTCTTCACTTAACAATTTCCATGGCTGATGTGCACCAGCAGGTAGCTCAGAACAGTCATATGCAGTTTTGAGCCATCTACATCT
GCTGGTGACGCGTGCTCCAATACTGTTTTCATCAGATTATAAGCATTTCTATTGTCGCTACAGTGACCCTTCATATGTGAAGAAATTGAAGCTTGAGATGCTTACAGCTGTGGCAAATGAGAGTAATACATATGATATTGTGACGGAACTCAGTGAATATGCTGCAAATGTTGACGTGGCCATTGCAAGAGAGTCTGTCC
GAGCTGTTGGACAAATTGCATTGCAGCAGTATGACGTCAATGCTATTGTTGACCGCCTCCTTCAGTTCCTAGAGATGGAAAAGGATTATATCACTGCAGAAACTCTGGTTCTCGTGAAAGACCTTCTGAGGAAGTATCCGCAGTGGAGTCATGACTGTATAGCAGTTGTTGGCAACGTTAGCAGCAGAAACGTTCCAGAA
CCCAAGGCTAAAGCTGCCCTGGTTTGGATGTTGGGAGAATATTCTCAGGATATGCTCGATGCCCCTTATGTTCTTGAAAGTCTAATTGACAGCTGGGATGAAGAAGACTCAGCAGAGGTTCGGTTGCATTTGCTGACTGCAGTGACGAAGTGCTTTTTCAAGCGGCCTCCAGAAACCCAGAAGGCCTTGGGGTCTGCCCT
GGCAGCTGGGTTGGCTGATGCACATCAGGACGTGCATGACAGAGCATTATTTTACTACAGACTTTTGCAACATGATGTGACCATAGCAGAGCGTGTAATTAATCCACCTAAACAAGCAGTTTCTGTATTTGCCGATACTCAGAGCAGTGAAGTCAAGGACCGTATATTTGATGAGTTCAACAGTCTTTCTGTTATTTATC
GTGAGCCTTCATATATGTTTATTGATAAGGAACATCGAGGACCATTTGAATTTTCAGAAGATATGGGAACTTTGGCTACCACAACAGGATCTGATGACAATGTCCTCCCGAGCCAAAGAGTTGAAGCAACTGACAATGATCTATTACTAAGTGCATCAGAAAAGGAGGAAAGCCGGGTTCCTGCTACGAATGGGTCTTTA
TCATATAATGCTCCTGACTACAATGGCAGTTCTACTGCCTTTGTCTCCCGTTCTCCATCTCCTACAACTGTTCCTCCTCAATCTGAAATTGCAGTTACAAGTACAGCACCTCCAGCATCTATTCCACAGGTGGGTTCTGTCATTGATGATTTGCTCGGGTTGGGCCCTGTCATGACTCCACCACCAGTTCCTGCATTAAA
ACTTAGTCCTAAAACAACACTTGATCCTGCCACCTTTCAGCGGAAATGGGGTCAGCTTCCAATTGCTCTAACACAGGTTTGTTTTTTCTCTATCTTAGCTTTATTCAGCTGCAATTTTTTTGTAATTTTTTCTTAATCTCAGCAAACTCAGACCCCAACCTGGTTTCAAGTCTCAATAAATCATT
>TRINITY_DN106705_c7_g1_i5 from sample A4 / Example unspliced isoform:ACTCCGCAACCTCGTTTTCTTCTTCGTTTCAGTATTTTCATTGCTACCGGGGAGGAGGAAACGATGGCTCCCCCGGCTCAATCGCAGCGTCTGCCACCTCCATCACAGCCTTCCGGGAAAGGGGAAGTGGGGGAACTGAAAACGCAGCTGAGACAGTTAGCAGGGAGCAGAGCACCGGGAGCTGAAGATCTAAAGAGGGA
GCTATACAAGAAGGTCATATCATATATGACCGTAGGGATCGATGTCTCATCCCTCTTCAGTGAAATGGTGATGTGCTCTGCAACATCAGACATTGTGCTGAAGAAGATGTGTTATCTCTACGTGGGAAATTATGCAAGGGTTCATCCTGATTTGGCCCTGCTCACCATTAATTTCCTCCAGAAGGACTGCCAGGACGAAG
ATCCCATGATCAGAGGGCTCGCTCTTAAGAGTCTCTGCTCTCTCAGTGTCAAAAATCTCGTTGAGTATCTCGTGGGTCCTCTGAGAGCGGGACTTCAGGACAGTAACAGCTATGTCAGGACAGTGGCAGCCATTGGGGTTCTCAAGTTATACCATATTTCTCCCACCACGTGCACCGAATCTGATTTCCCCGTGGCACTG
AAGGCTCTTCTGCTTCACGATCCCGATGCCCAGGTTGTTGCCAATTGCTTGTCATCACTTCAAGAAATTTTGACCTTGGAAGGAAACTCTTCTGAGGAAGCATCTAGAGAGAAGGAGTTGCTTTTGAGTAAGCCAGTGATCTATGCTCTTTTGAATAGGATCAGGGAGTTCAGTGAGTGGGCTCAATGTCTCATACTTGA
CTTAGTTGTCAAGTATATTCCTTCTGAAAGCAGTGAGATATTTGACATTATGAATCTACTGGAGGATAGGCTACAGCATGCAAATAGTGCTGTAGTCTTAGCTACAATCAATTTGTTTCTTCACTTAACAATTTCCATGGCTGATGTGCACCAGCAGGTTTATGAACGAATCAAGGCTCCTTTGCTCACTTTGGTCAGTT
CAGGTAGCTCAGAACAGTCATATGCAGTTTTGAGCCATCTACATCTGCTGGTGACGCGTGCTCCAATACTGTTTTCATCAGATTATAAGCATTTCTATTGTCGCTACAGTGACCCTTCATATGTGAAGAAATTGAAGCTTGAGATGCTTACAGCTGTGGCAAATGAGAGTAATACATATGATATTGTGACGGAACTCAGT
GAATATGCTGCAAATGTTGACGTGGCCATTGCAAGAGAGTCTGTCCGAGCTGTTGGACAAATTGCATTGCAGCAGTATGACGTCAATGCTATTGTTGACCGCCTCCTTCAGTTCCTAGAGATGGAAAAGGATTATATCACTGCAGAAACTCTGGTTCTCGTGAAAGACCTTCTGAGGAAGTATCCGCAGTGGAGTCATGA
CTGTATAGCAGTTGTTGGCAACGTTAGCAGCAGAAACGTTCCAGAACCCAAGGCTAAAGCTGCCCTGGTTTGGATGTTGGGAGAATATTCTCAGGATATGCTCGATGCCCCTTATGTTCTTGAAAGTCTAATTGACAGCTGGGATGAAGAAGACTCAGCAGAGgttgttatcatgcagtggtctcagGTTCGGTTGCATT
TGCTGACTGCAGTGACGAAGTGCTTTTTCAAGCGGCCTCCAGAAACCCAGAAGGCCTTGGGGTCTGCCCTGGCAGCTGGGTTGGCTGATGCACATCAGGACGTGCATGACAGAGCATTATTTTACTACAGACTTTTGCAACATGATGTGACCATAGCAGAGCGTGTAATTAATCCACCTAAACAAGCAGTTTCTGTATTT
GCCGATACTCAGAGCAGTGAAGTCAAGGACCGTATATTTGATGAGTTCAACAGTCTTTCTGTTATTTATCGTGAGCCTTCATATATGTTTATTGATAAGGAACATCGAGGACCATTTGAATTTTCAGAAGATATGGGAACTTTGGCTACCACAACAGGATCTGATGACAATGTCCTCCCGAGCCAAAGAGTTGAAGCAAC
TGACAATGATCTATTACTAAGTGCATCAGAAAAGGAGGAAAGCCGGGTTCCTGCTACGAATGGGTCTTTATCATATAATGCTCCTGACTACAATGGCAGTTCTACTGCCTTTGTCTCCCGTTCTCCATCTCCTACAACTGTTCCTCCTCAATCTGAAATTGCAGTTACAAGTACAGCACCTCCAGCATCTATTCCACAGG
TGGGTTCTGTCATTGATGATTTGCTCGGGTTGGGCCCTGTCATGACTCCACCACCAGTTCCTGCATTAAAACTTAGTCCTAAAACAACACTTGATCCTGCCACCTTTCAGCGGAAATGGGGTCAGCTTCCAATTGCTCTAACACAGG