sp|P23444|H1_MAIZE ----> Histone H1

Intron 1 GTACTTCTCA ... TTCATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	35.48	10	7	4
A2	28.57	5	2	2
A3	53.85	3	0	7
A4	20	6	1	2
A5	33.33	3	0	3
A6	20	32	13	3
A7	19.15	38	7	11
A8	46.67	12	5	16
A9	18.64	24	5	6
A10	17.07	17	5	2

>TRINITY_DN105294_c0_g1_i2 from sample A1 / Example spliced isoform

CGTGTTTTTTCCATTCCAAGATCGCTGATTTGAGCAATTCCCTGCGATTGAATTCAGTATCTGCGACTGCGAGCAAGAGCCGAATTAGTTTTCTGCCGTGAAAATCAAGCTTCTGTGTTGTGTGTAATTTTGTAGGCACAATCCATGGCTTCCACCGACCCTGCTCCGGAGACTGTCGCTGCCGAGGCCGTGTTAAATGA
AGATTCTAAGACCACTGAAGAGAAGCCTGTCAAGGCATCCAAGGAGAAAAAGGCAAAAACCCCAAAGGAAAAGAAGCCAAAGGCTGCCAAGGGTTCGAAACCCCCGCCTGCTCATCCCCCTTATTTTCAGATGATATCTGAAGCTATTACGGCTTTGAAAGAGCGCGGCGGTTCCAGCCCTTACGCGATTGCCAAATTCA
TGAGCGAAAAATATAAATCCGATTTGCCTCCCGTTTTCAAGAAGAAGCTCACTGTCCAGCTCCGGAATTTGACAAATTCCGGCAAGTTAACGAAAGTGAAAGGCTCCTACAAGCTTGCCGAGAAAGAAAAGAAGCCCGACGCCCCCAAGCCGAAGACAGAAAAGAAGCCAGCTGCCAAGAAGCCTAAAGCACCTGCGGCC
AAGGCTCCGGCAAAGGCTCCTTCTAAGCCCTCGAA

>TRINITY_DN105294_c0_g1_i1 from sample A1 / Example unspliced isoform:

CGTGTTTTTTCCATTCCAAGATCGCTGATTTGAGCAATTCCCTGCGATTGAATTCAGTATCTGCGACTGCGAGCAAGAGCCGAATTAGTTTTCTGCCGTGAAAATCAAGCTTCTGTGTTGTGTGTAATTTTGTAGGCACAATCCATGGCTTCCACCGACCCTGCTCCGGAGACTGTCGCTGCCGAGGCCGTGTTAAATGA
AGATTCTAAGACCACTGAAGAGAAGCCTGTCAAGGCATCCAAGGAGAAAAAGGCAAAAACCCCAAAGGAAAAGAAGCCAAAGGCTGCCAAGGGTTCGAAACCCCCGCCTGCTCATCCCCCTTATTTTCAGgtacttctcataacgccttttcttaatcgattcatttaaattttactccgtcttttccatgcatttatgg
agctttcattgcagATGATATCTGAAGCTATTACGGCTTTGAAAGAGCGCGGCGGTTCCAGCCCTTACGCGATTGCCAAATTCATGAGCGAAAAATATAAATCCGATTTGCCTCCCGTTTTCAAGAAGAAGCTCACTGTCCAGCTCCGGAATTTGACAAATTCCGGCAAGTTAACGAAAGTGAAAGGCTCCTACAAGCTT
GCCGAGAAAGAAAAGAAGCCCGACGCCCCCAAGCCGAAGACAGAAAAGAAGCCAGCTGCCAAGAAGCCTAAAGCACCTGCGGCCAAGGCTCCGGCAAAGGCTCCTTCTAAGCCCTCGAA