sp|Q9M812|CUT1C_ARATH ----> Protein CURVATURE THYLAKOID 1C, chloroplastic

Intron 1 GTAAGAAATT ... TGTGTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	21.43	55	1	15
A2	37.38	67	0	40
A3	26.88	68	0	25
A4	27.59	42	0	16
A5	40.74	32	0	22
A6	26.75	471	0	172
A7	26.06	383	0	135
A8	28.41	257	0	102
A9	29.82	360	0	153
A10	29.07	266	0	109

>TRINITY_DN113525_c0_g1_i1 from sample A1 / Example spliced isoform

TGTAGGGAGAGATAGTTGGATTGTGTGGTGGATGGCAGGATAACCCAATCCAACTATCTCTCCCACTCTTTCATTCTTTTCGTGTTTTGAGTTTACAGTGTGTCACTCTTGTTAGCTCAACGGCATTTCCCGCAGCAGAGTACTCCCTTCTTGTCACTTGTGTGGCTGACAATGGCGAGCACCTCAGCTTCGACTAGCGT
ATTGCCCAAACTGTCAGCCCATGGGCTACTTGCCAATGCAGGAGGATTGGGTAGTCGTTCTTCGCCTCACGTGGTTTCTCTGCCAGCTTTGACATGCCGTTTAGATCAGTCATGCGTTTCTTCTACACCATCCATTCGCTTCGGTAGAAGGAGAGGCAGGGTAATTGCAATGGCTACTGGGGATACCTCTACTGATCCAG
TGAAGCCATTGACGGATGCCCTCAAACCCGTTCAGGAGTATTGGGAAAAGACCGATGACAAACTCGCAGTTGGTGGACTGGGTTTTGCGGCTGTGATAGTGCTTTGGGCATCAACTGGACTTATTGCGGCAATTGACAAGCTTCCTCTTATTCCAAGTGCATTTGAATTTGTTGGAATTCTGTTTTCTGGGTGGTTCATA
TACCGAAATTTGCTCTTCAAACCTGATAGGGAAGAGCTATGGACAAAAATTCAAACTGCCATATCAGAAATTACAGGCCAGTGAGACTGGATTCTTCACGCATGCATAACAAGCATGCTGAAGAATATGCAGACTTACAGACGCTGGAGATAAAGTGGTTCTTGCTTTGGAATGAAATGGCAGGTGTTGTTGAGATCAAG
AGATCCTTTTTATGTTATCAAATGCATTTTCTTATAGGAAAGTGGAACGTTTGATGTTTTATTCTTTTCAATCAACGTTTATTAGCATGCTAGTAAAGATGCCTGTAGAGATGGTCGAATATATTTTAACTGAGGATTAAGCAAAGATTATATATGCTTCATATAAATATTCGATTAAGAAACACATGAAGCACTGCCCA
TGTTTTGTTGAGGTAATTACCTGCTCAAACAGTTCATTTTGTATTTGTATCTTATAACCATCGGATAATACAACTAATTAAAAAAAAGGTGCCTTCTGTATCTGTATATTTTATCCCTCC

>TRINITY_DN113525_c0_g1_i2 from sample A1 / Example unspliced isoform:

GAGTACTCCCTTCTTGTCACTTGgtaagaaattttcttcgatttttgaattaggttctgctcggttattcaaatctcagattcttgtggcgttaaactattgggttgtgttgcagTGTGGCTGACAATGGCGAGCACCTCAGCTTCGACTAGCGTATTGCCCAAACTGTCAGCCCATGGGCTACTTGCCAATGCAGGAGG
ATTGGGTAGTCGTTCTTCGCCTCACGTGGTTTCTCTGCCAGCTTTGACATGCCGTTTAGATCAGTCATGCGTTTCTTCTACACCATCCATTCGCTTCGGTAGAAGGAGAGGCAGGGTAATTGCAATGGCTACTGGGGATACCTCTACTGATCCAGTGAAGCCATTGACGGATGCCCTCAAACCCGTTCAGGAGTATTGGG
AAAAGACCGATGACAAACTCGCAGTTGGTGGACTGGGTTTTGCGGCTGTGATAGTGCTTTGGGCATCAACTGGACTTATTGCGGCAATTGACAAGCTTCCTCTTATTCCAAGTGCATTTGAATTTGTTGGAATTCTGTTTTCTGGGTGGTTCATATACCGAAATTTGCTCTTCAAACCTGATAGGGAAGAGCTATGGACA
AAAATTCAAACTGCCATATCAGAAATTACAGGCCAGTGAGACTGGATTCTTCACGCATGCATAACAAGCATGCTGAAGAATATGCAGACTTACAGACGCTGGAGATAAAGTGGTTCTTGCTTTGGAATGAAATGGCAGGTGTTGTTGAGATCAAGAGATCCTTTTTATGTTATCAAATGCATTTTCTTATAGGAAAGTGG
AACGTTTGATGTTTTATTCTTTTCAATCAACGTTTATTAGCATGCTAGTAAAGATGCCTGTAGAGATGGTCGAATATATTTTAACTGAGGATTAAGCAAAGATTATATATGCTTCATATAAATATTCGATTAAGAAACACATGAAGCACTGCCCATGTTTTGTTGAGGTAATTACCTGCTCAAACAGTTCATTTTGTATT
TGTATCTTATAACCATCGGATAATACAACTAATTAAAAAAAAGGTGCCTTCTGTATCTGTATATTTTATCCCTCC