sp|Q8LG95|PP332_ARATH ----> Pentatricopeptide repeat-containing protein At4g21190
Intron 1 GTGAGAATGC ... GGCATGTCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 1 | 1 | 0 |
| A2 | 66.67 | 2 | 2 | 6 |
| A3 | 66.67 | 1 | 4 | 0 |
| A4 | 60 | 2 | 2 | 4 |
| A5 | 66.67 | 1 | 2 | 2 |
| A6 | 38.46 | 4 | 4 | 1 |
| A7 | 55.56 | 4 | 4 | 6 |
| A8 | 36.84 | 6 | 7 | 0 |
| A9 | 25 | 9 | 4 | 2 |
| A10 | 15.79 | 8 | 0 | 3 |
>TRINITY_DN41965_c1_g1_i2 from sample A7 / Example spliced isoformGGCCACTATGTTCTGTTTTACAACGCTGCAGTTAGAATGAGCAGGCAGCAGTAGCAGGGGATGAGGAGCGCAGTTTTCAACCGTCTTAAAGCCGTTAGATTACACACCTTAAGGCGGGCCGCAGCCATCCACAGCGTTACAGGCAGCTCGGCAGCCGAACGGGGTTCTCATGGCAATGCTGCAACAAAGACATTTATTGG
AAACGAGTCTAGAAACAGAGAAGCGGAAGCTGCCAGAAAGAGATTCATGTTAGGACACAAAGAAAACATGTTAGTTGATATTGGTTCTCACGGCAATGTTGCAACGAAGACATTTATTGGAAATAAGTCAAGAAATAAAGAAGCGGAATCTGCTGGGAAGAAATTTGAGCTAGGAGACGTAATAAACATGCTAAATGATA
TCGGTTCTCATGGTAATGTTGCAGCAAAGACACTTACTGGAAACATTTTGAGAAATAAAGAAGTGGAAGCTCCCAGTAAAAGATTCAGGATAGGTGACAAAACAAACATTTTAGTTAATATAGGTTCTCATAGCAATATTCCAACAAAGAAATTTACTGGAAATAAGTCAAGAATTAAAGAGGTGGAAGCTCCTAGAAAG
AGATTCGAGTTGGGAGACAAAACAAACATATTAGATGATATTGATTCTCAAGGTAATGTTGCAACAAAGACAATTATTGGAAATATGTCAAGAAATAAAGAAGCAAAAGCTCCTCGAAAGATATTTGGCTTAACGGAAAGAACAAGCTTGTTAGTTGATATACTTTTACGGCTTAAAGATTCAAAGGAAGCTATTTATGG
AGCTTTAGATTCATTTGCTGCATGTGAAGAAAAGTTTCCGTTAACCGTTTTGAAAAGGGCATTGTACCAGTTGGAACAGAAACAACAGTGGCATCGAATCGTCCAGGTGATAAAATGGATATTAAGCAAGGGACAAGCTATGACAATGGAGACTTATGAGAAGCTATTGTGTGCTTTGGACAAAGACCGTAGAGCAGAGG
AAGCTCATGCTTTTTGGGATAAGATAATAGGCAGTAATTTGCGTTCTGTGCCTTGGCAGATGTGTGCTTCTATGATATACATCTATCAACGGAATAACATGCCTGAAAAACTCATAAAGCTTTTTAATGCTCTTGAAATGCACAATTGGAAACCACCAGACAAAGCTGTGATAAAAAAAGTGGCAGACACATATCAATTA
TTAGGTTTACAGGTGGAACAGGAAAGGGTCTTAAAAAAGTACGAAAGTCTGTTTACAGCTTCATCAAATACTGGGTCCAAGAAAAAGAAGGGAAAAAGAAGGTAGAGAATGGCAGCGGAGAAGACAAGCTGAACAGAGGAGGTGATTCACTTAGAAATTGTGAGTTGCTGTCAGAAAGTACTCCATCGAATTCTTGATGC
TGAAAGTGATTTCAGTGGGACAGTAATCACTAAGATTGATAGCTAACTTGACTGGTAATAAAGTCTCGATATTTGTCAGCATTTTGGGGCCTTTTAAAAGGCTTTCTTCTTTGCAGATAGGTGGCCTAAGAGTTCAGGCCAGGTAATTTCCAACCATTCTAGATGAGTATTCCTGACTGCTAGTAGATGGGCCCTCACTG
TGGTTGTTGTATCTTCTGTCCATAAAGCATATACTAATTCTCAAAGTCACTTTAAAGTCACCACTAATGTTTTGTGGTAGCAAGCTTCTAAAAGCTTACATCAGGGTATTGGCATGTACTTTCCCATGTCCTAATATAACAGTCAGCAGATGTTAGCTGAAGGCTTGTAAGCAGAATTCTATAAAATCTGAAATTCATAG
ATATTGGCACTTAATAAGCTCTTTGAATTATATGCCAAGAAACTGTCAATCAAGAAAGGTAGAAGGGGCAATTTTGGCTAGCTAGGTCACCAAAGCTAGCCTTGATTAAATGTTGAAGTTTACAGTAGATATTTAGTTACTCATTTACAAACAAGGGTGACATTCTCATGGAAATTTAATCTTATGTAAAGGGATTTTTC
ATCATAAATTGATAGGAAACTTGTGCT
>TRINITY_DN41965_c1_g1_i1 from sample A7 / Example unspliced isoform:GGCCACTATGTTCTGTTTTACAACGCTGCAGTTAGAATGAGCAGGCAGCAGTAGCAGGGGATGAGGAGCGCAGTTTTCAACCGTCTTAAAGCCGTTAGATTACACACCTTAAGGCGGGCCGCAGCCATCCACAGCGTTACAGGCAGCTCGGCAGCCGAACGGATGTTTTGCAGGGTTCTCATGGCAATGCTGCAACAAAG
ACATTTATTGGAAACGAGTCTAGAAACAGAGAAGCGGAAGCTGCCAGAAAGAGATTCATGTTAGGACACAAAGAAAACATGTTAGTTGATATTGGTTCTCACGGCAATGTTGCAACGAAGACATTTATTGGAAATAAGTCAAGAAATAAAGAAGCGGAATCTGCTGGGAAGAAATTTGAGCTAGGAGACGTAATAAACAT
GCTAAATGATATCGGTTCTCATGGTAATGTTGCAGCAAAGACACTTACTGGAAACATTTTGAGAAATAAAGAAGTGGAAGCTCCCAGTAAAAGATTCAGGATAGGTGACAAAACAAACATTTTAGTTAATATAGGTTCTCATAGCAATATTCCAACAAAGAAATTTACTGGAAATAAGTCAAGAATTAAAGAGGTGGAAG
CTCCTAGAAAGAGATTCGAGTTGGGAGACAAAACAAACATATTAGATGATATTGATTCTCAAGGTAATGTTGCAACAAAGACAATTATTGGAAATATGTCAAGAAATAAAGAAGCAAAAGCTCCTCGAAAGATATTTGGCTTAACGGAAAGAACAAGCTTGTTAGTTGATATACTTTTACGGCTTAAAGATTCAAAGGAA
GCTATTTATGGAGCTTTAGATTCATTTGCTGCATGTGAAGAAAAGTTTCCGTTAACCGTTTTGAAAAGGGCATTGTACCAGTTGGAACAGAAACAACAGTGGCATCGAATCGTCCAGGTGATAAAATGGATATTAAGCAAGGGACAAGCTATGACAATGGAGACTTATGAGAAGCTATTGTGTGCTTTGGACAAAGACCG
TAGAGCAGAGGAAGCTCATGCTTTTTGGGATAAGATAATAGGCAGTAATTTGCGTTCTGTGCCTTGGCAGATGTGTGCTTCTATGATATACATCTATCAACGGAATAACATGCCTGAAAAACTCATAAAGCTTTTTAATGCTCTTGAAATGCACAATTGGAAACCACCAGACAAAGCTGTGATAAAAAAAGTGGCAGACA
CATATCAATTATTAGGTTTACAGGTGGAACAGGAAAGGGTCTTAAAAAAGTACGAAAGTCTGTTTACAGCTTCATCAAATACTGGGTCCAAGAAAAAGAAGGGAAAAAGAAGGTAGAGAATGGCAGCGgtgagaatgctggcatatggtgccattatattttatcccaaaaaatcagttggatgtattttggatttttct
cttatttcacgacacattttctccaacacgttgtccatttcagacattatgatttggaaagctgttgtttctgatcatttcctcggcatgtcagGAGAAGACAAGCTGAACAGAGGAGGTGATTCACTTAGAAATTGTGAGTTGCTGTCAGAAAGTACTCCATCGAATTCTTGATGCTGAAAGTGATTTCAGTGGGACAG
TAATCACTAAGATTGATAGCTAACTTGACTGGTAATAAAGTCTCGATATTTGTCAGCATTTTGGGGCCTTTTAAAAGGCTTTCTTCTTTGCAGATAGGTGGCCTAAGAGTTCAGGCCAGGTAATTTCCAACCATTCTAGATGAGTATTCCTGACTGCTAGTAGATGGGCCCTCACTGTGGTTGTTGTATCTTCTGTCCAT
AAAGCATATA
Intron 2 GCATATGGTG ... GGCATGTCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 1 | 2 | 0 |
| A2 | 66.67 | 2 | 2 | 6 |
| A3 | 100 | 0 | 4 | 0 |
| A4 | 60 | 2 | 2 | 4 |
| A5 | 66.67 | 1 | 2 | 2 |
| A6 | 38.46 | 4 | 4 | 1 |
| A7 | 52.78 | 4.5 | 4 | 6 |
| A8 | 38.46 | 4 | 5 | 0 |
| A9 | 25 | 9 | 4 | 2 |
| A10 | 15.79 | 8 | 0 | 3 |
>TRINITY_DN41965_c1_g1_i3 from sample A7 / Example spliced isoformGGCCACTATGTTCTGTTTTACAACGCTGCAGTTAGAATGAGCAGGCAGCAGTAGCAGGGGATGAGGAGCGCAGTTTTCAACCGTCTTAAAGCCGTTAGATTACACACCTTAAGGCGGGCCGCAGCCATCCACAGCGTTACAGGCAGCTCGGCAGCCGAACGGGGTTCTCATGGCAATGCTGCAACAAAGACATTTATTGG
AAACGAGTCTAGAAACAGAGAAGCGGAAGCTGCCAGAAAGAGATTCATGTTAGGACACAAAGAAAACATGTTAGTTGATATTGGTTCTCACGGCAATGTTGCAACGAAGACATTTATTGGAAATAAGTCAAGAAATAAAGAAGCGGAATCTGCTGGGAAGAAATTTGAGCTAGGAGACGTAATAAACATGCTAAATGATA
TCGGTTCTCATGGTAATGTTGCAGCAAAGACACTTACTGGAAACATTTTGAGAAATAAAGAAGTGGAAGCTCCCAGTAAAAGATTCAGGATAGGTGACAAAACAAACATTTTAGTTAATATAGGTTCTCATAGCAATATTCCAACAAAGAAATTTACTGGAAATAAGTCAAGAATTAAAGAGGTGGAAGCTCCTAGAAAG
AGATTCGAGTTGGGAGACAAAACAAACATATTAGATGATATTGATTCTCAAGGTAATGTTGCAACAAAGACAATTATTGGAAATATGTCAAGAAATAAAGAAGCAAAAGCTCCTCGAAAGATATTTGGCTTAACGGAAAGAACAAGCTTGTTAGTTGATATACTTTTACGGCTTAAAGATTCAAAGGAAGCTATTTATGG
AGCTTTAGATTCATTTGCTGCATGTGAAGAAAAGTTTCCGTTAACCGTTTTGAAAAGGGCATTGTACCAGTTGGAACAGAAACAACAGTGGCATCGAATCGTCCAGGTGATAAAATGGATATTAAGCAAGGGACAAGCTATGACAATGGAGACTTATGAGAAGCTATTGTGTGCTTTGGACAAAGACCGTAGAGCAGAGG
AAGCTCATGCTTTTTGGGATAAGATAATAGGCAGTAATTTGCGTTCTGTGCCTTGGCAGATGTGTGCTTCTATGATATACATCTATCAACGGAATAACATGCCTGAAAAACTCATAAAGCTTTTTAATGCTCTTGAAATGCACAATTGGAAACCACCAGACAAAGCTGTGATAAAAAAAGTGGCAGACACATATCAATTA
TTAGGTTTACAGGTGGAACAGGAAAGGGTCTTAAAAAAGTACGAAAGTCTGTTTACAGCTTCATCAAATACTGGGTCCAAGAAAAAGAAGGGAAAAAGAAGGTAGAGAATGGCAGCGGTGAGAATGCTGGAGAAGACAAGCTGAACAGAGGAGGTGATTCACTTAGAAATTGTGAGTTGCTGTCAGAAAGTACTCCATCG
AATTCTTGATGCTGAAAGTGATTTCAGTGGGACAGTAATCACTAAGATTGATAGCTAACTTGACTGGTAATAAAGTCTCGATATTTGTCAGCATTTTGGGGCCTTTTAAAAGGCTTTCTTCTTTGCAGATAGGTGGCCTAAGAGTTCAGGCCAGGTAATTTCCAACCATTCTAGATGAGTATTCCTGACTGCTAGTAGAT
GGGCCCTCACTGTGGTTGTTGTATCTTCTGTCCATAAAGCATATAATAACTCTCAAAGTCACTTTAAAGTCACCACTAATGTTTTGTGGTAGCAAGCTTCTAAAAGCTTACATCAGGGTATTGGCATGTACTTTCCCATGTCCTAATATAACAGTCAGCAGATGTTAGCTGAAGGCTTGTAAGCAGAATTCTATAAAATC
TGAAATTCATAGATATTGGCACTTAATAAGCTCTTTGAATTATATGCCAAGAAACTGTCAATCAAGAAAGGTAGAAGGGGCAATTTTGGCTAGCTAGGTCACCAAAGCTAGCCTTGATTAAATGTTGAAGTTTACAGTAGATATTTAGTTACTCATTTACAAACAAGGGTGACATTCTCATGGAAATTTAATCTTATGTA
AAGGGATTTTTCATCATAAATTGATAGGAAACTTGTGCT
>TRINITY_DN41965_c1_g1_i1 from sample A7 / Example unspliced isoform:GGCCACTATGTTCTGTTTTACAACGCTGCAGTTAGAATGAGCAGGCAGCAGTAGCAGGGGATGAGGAGCGCAGTTTTCAACCGTCTTAAAGCCGTTAGATTACACACCTTAAGGCGGGCCGCAGCCATCCACAGCGTTACAGGCAGCTCGGCAGCCGAACGGATGTTTTGCAGGGTTCTCATGGCAATGCTGCAACAAAG
ACATTTATTGGAAACGAGTCTAGAAACAGAGAAGCGGAAGCTGCCAGAAAGAGATTCATGTTAGGACACAAAGAAAACATGTTAGTTGATATTGGTTCTCACGGCAATGTTGCAACGAAGACATTTATTGGAAATAAGTCAAGAAATAAAGAAGCGGAATCTGCTGGGAAGAAATTTGAGCTAGGAGACGTAATAAACAT
GCTAAATGATATCGGTTCTCATGGTAATGTTGCAGCAAAGACACTTACTGGAAACATTTTGAGAAATAAAGAAGTGGAAGCTCCCAGTAAAAGATTCAGGATAGGTGACAAAACAAACATTTTAGTTAATATAGGTTCTCATAGCAATATTCCAACAAAGAAATTTACTGGAAATAAGTCAAGAATTAAAGAGGTGGAAG
CTCCTAGAAAGAGATTCGAGTTGGGAGACAAAACAAACATATTAGATGATATTGATTCTCAAGGTAATGTTGCAACAAAGACAATTATTGGAAATATGTCAAGAAATAAAGAAGCAAAAGCTCCTCGAAAGATATTTGGCTTAACGGAAAGAACAAGCTTGTTAGTTGATATACTTTTACGGCTTAAAGATTCAAAGGAA
GCTATTTATGGAGCTTTAGATTCATTTGCTGCATGTGAAGAAAAGTTTCCGTTAACCGTTTTGAAAAGGGCATTGTACCAGTTGGAACAGAAACAACAGTGGCATCGAATCGTCCAGGTGATAAAATGGATATTAAGCAAGGGACAAGCTATGACAATGGAGACTTATGAGAAGCTATTGTGTGCTTTGGACAAAGACCG
TAGAGCAGAGGAAGCTCATGCTTTTTGGGATAAGATAATAGGCAGTAATTTGCGTTCTGTGCCTTGGCAGATGTGTGCTTCTATGATATACATCTATCAACGGAATAACATGCCTGAAAAACTCATAAAGCTTTTTAATGCTCTTGAAATGCACAATTGGAAACCACCAGACAAAGCTGTGATAAAAAAAGTGGCAGACA
CATATCAATTATTAGGTTTACAGGTGGAACAGGAAAGGGTCTTAAAAAAGTACGAAAGTCTGTTTACAGCTTCATCAAATACTGGGTCCAAGAAAAAGAAGGGAAAAAGAAGGTAGAGAATGGCAGCGGTGAGAATGCTGgcatatggtgccattatattttatcccaaaaaatcagttggatgtattttggatttttct
cttatttcacgacacattttctccaacacgttgtccatttcagacattatgatttggaaagctgttgtttctgatcatttcctcggcatgtcagGAGAAGACAAGCTGAACAGAGGAGGTGATTCACTTAGAAATTGTGAGTTGCTGTCAGAAAGTACTCCATCGAATTCTTGATGCTGAAAGTGATTTCAGTGGGACAG
TAATCACTAAGATTGATAGCTAACTTGACTGGTAATAAAGTCTCGATATTTGTCAGCATTTTGGGGCCTTTTAAAAGGCTTTCTTCTTTGCAGATAGGTGGCCTAAGAGTTCAGGCCAGGTAATTTCCAACCATTCTAGATGAGTATTCCTGACTGCTAGTAGATGGGCCCTCACTGTGGTTGTTGTATCTTCTGTCCAT
AAAGCATATA