sp|O64645|SOC1_ARATH ----> MADS-box protein SOC1

Intron 1 GTATTATTGG ... GGACAATTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	40.8	10.9	8	7
A2	45.65	7.7	10.9	2
A3	31.06	8.9	2	6
A4	44.25	5.8	4	5
A5	60	3	5	4
A6	35.06	19.4	9.9	11
A7	31.51	18.7	7.1	10.2
A8	44.11	9.5	8	7
A9	28.97	39.8	18.5	14
A10	26.53	19.9	7.4	7

>TRINITY_DN44272_c0_g1_i3 from sample A6 / Example spliced isoform

AGAGTTTAGAATTCTGCCGACATTAGTAACATTTTCTTGTCATTGTTTTCCGTACTGGCTGTTTGTGCAGGGTTATATTTTTCTGAACAAGAGGTGTGTCTCTCCTTCGAGGCTAGGCCAGTGAGCGGCTATGGTCTTTGACAGAATAGTTGCGAAACTGGACCGGAATTTAACTTGATCAGGCCCACGGGCCCGTACTT
AGACAGGATAGAGGTAGATCGATTGCTTTTCCGACTAGAAACCGAGAAGTATCTGTCGTCTTGGGATGAGAGACTGGGAGAATTCTTCTGTAATTTCTATTTTTGGGGCTTCCTGTTCTTCGATTCGCAACCTCTGCGTTTAAGAACTTGTTCGGCTATCTTTGAAGAAGAGACAGGAGGCGCAGAATGGGGAGGGGAAA
AGTCCAGCTGAAGAAAATCGAGAACAGGATCAGCAGGCAGGTTACATTTTCTAAGCGCAGGAATGGTTTACTCAAGAAAGCTTACGAGCTCTCGGTGCTCTGCGATGTCGAAATCGGACTTATTGTTTTCTCCCCCAGAGGGAAGCTCTACGAATTCTCCAGGCCCTGCATGCAACAAATGTTGGAAAAGTATAAAAATT
GTTCACAAGAAAGTGGCAGAAGTAATACAACCGAAGAGCAAGATACTCAGGTTCTTTTTCTGGTTAATATATGTGGAAATTTTGAAAGAAGTTTCAATAAATAAGTAGTTGTCTTAATTTTTGGGAAAATAACAAATATGTCAATGCTAAATCAATAATTAAGTTTAAT

>TRINITY_DN44272_c0_g1_i4 from sample A6 / Example unspliced isoform:

AGAGTTTAGAATTCTGCCGACATTAGTAACATTTTCTTGTCATTGTTTTCCGTACTGGCTGTTTGTGCAGGGTTATATTTTTCTGAACAAGAGGTGTGTCTCTCCTTCGAGGCTAGGCCAGTGAGCGGCTATGGTCTTTGACAGAATAGTTGCGAAACTGGACCGGAATTTAACTTGATCAGGCCCACGGGCCCGTACTT
AGACAGGATAGAGGTAGATCGATTGCTTTTCCGACTAGAAACCGAGAAGTATCTGTCGTCTTGGGATGAGAGACTGGGAGAATTCTTCTGTAATTTCTATTTTTGGGGCTTCCTGTTCTTCGATTCGCAACCTCTGCGTTTAAGAACTTGTTCGGCTATCTTTGAAGgtattattgggtttcaatttaatctactcccat
tttctagtgggagattgttctgattcccagacctgaggctctctgattgattgtttggcggacaattagAAGAGACAGGAGGCGCAGAATGGGGAGGGGAAAAGTCCAGCTGAAGAAAATCGAGAACAGGATCAGCAGGCAGGTTACATTTTCTAAGCGCAGGAATGGTTTACTCAAGAAAGCTTACGAGCTCTCGGTGC
TCTGCGATGTCGAAATCGGACTTATTGTTTTCTCCCCCAGAGGGAAGCTCTACGAATTCTCCAGGCCCTGTGTATTGATTTTCAACATGTGGATCCTTGGGCTTTCACACCACTTACAATTGGAC

Intron 2 GTATTATTGG ... GGACAATTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	40.54	11	9	6
A2	42.86	8	10	2
A3	30.77	9	2	6
A4	42.86	6	4	5
A5	60	3	5	4
A6	37.04	17	9	11
A7	33.33	19	8	11
A8	44.44	10	9	7
A9	25.23	40	13	14
A10	26.92	19	7	7

>TRINITY_DN42252_c1_g2_i1 from sample A8 / Example spliced isoform

CTTCTGGGCTAGGCCAATGAGCGGCTATGGTCTTTTGACAGAATAGTTGCGAAACTGCACTGGAATTTGACTTAGACGGGATCGATTGCTTTTCCGACTAGAAACCGAGAAGTATCCGTCGTCTTGGGATGAGAGACGGGGAGAAATTTTATGTAATTACTATTTTTTGGCCTTCCTGTTCTTCGATTCGCAGCCTCTGC
CTTTAAGAACTTGTTCGGCTATCTTTGAAGAAGAGACAGGAGGCGCAGAATGAGGAGGGGAAAAGTCCAGCTGAAGAAAATCGAGAACAGGATCAGCAGGCAGGTTACATTTTCTAAGCGCAGGAATGGTTTACTCAAGAAAGCTTACGAGCTCTCAGTGCTCTGCGATGTGGAAATGGGACTTATTGTTTTCTCCCCCA
GAGGGAAGCTCTACGAATTCTCCAGGCCCTGGTATGTATGGTTAATGCGTATTTCCCTTAAAATGTTTGATTGCTCTTTCGATCTTTGGTTAATGTAGAAGAATCAATCAAACGTTGTAGGAATGGCTGTTTGGATCTTGATTGCTGGTTTGTCAGCCATAACCCGGCCGTTACTTTGGATTTCGGACGTTTGGATTTTT
GATGGATCCTTCCGTTCTATATATAAGCATCTTTCAGTCGATTATTATCGAGTTATTTAAGGTCTAATAGTTTGCTTTTTTCATACGATAGCAGGTTATTTGTTATAAAGTGCAGGCTTTCGGTTGAGATGTCTAAGTGCCCTAGGGTTATTCGTGCAATGCAAAATTCCATCTTATATTCATTTTCCGAACAGTCTACA
GTCTAATAAAAAGAAACAGTGGTGTATTCAAATCTATTTAGTCCTTAGGGTTGGGTATCTTAGAAGGTTTGCCCATTCATGTCTTAAACACGTTGTATATGCGATTTGTTTTGGTCCATCCTCAAATGTTCCCTCATAATAGAACAGTAGATAATTTCTTCACCCAAATCTGTTGTTTTTTTCCCTTTTTCTTAGTTAAG
GTTATATTAAAATGTGATTGGGTCATACACACTATACATTGTATATACATTTTCACGTTGACAGCAATCCACAGGTGAAATTTGGT

>TRINITY_DN42252_c1_g2_i5 from sample A8 / Example unspliced isoform:

CTTCTGGGCTAGGCCAATGAGCGGCTATGGTCTTTTGACAGAATAGTTGCGAAACTGCACTGGAATTTGACTTAGACGGGATCGATTGCTTTTCCGACTAGAAACCGAGAAGTATCCGTCGTCTTGGGATGAGAGACGGGGAGAAATTTTATGTAATTACTATTTTTTGGCCTTCCTGTTCTTCGATTCGCAGCCTCTGC
CTTTAAGAACTTGTTCGGCTATCTTTGAAGgtattattgggtttcaatttaatcctctctctttttctagtggaagattgttctgattccctgacctgagtctctctgattgattgtttggcggacaattagAAGAGACAGGAGGCGCAGAATGAGGAGGGGAAAAGTCCAGCTGAAGAAAATCGAGAACAGGATCAGCA
GGCAGGTTACATTTTCTAAGCGCAGGAATGGTTTACTCAAGAAAGCTTACGAGCTCTCAGTGCTCTGCGATGTGGAAATGGGACTTATTGTTTTCTCCCCCAGAGGGAAGCTCTACGAATTCTCCAGGCCCTGGTATGTATGGTTAATGCGTATTTCCCTTAAAATGTTTGATTGCTCTTTCGATCTTTGGTTAATGTAG
AAGAATCAATCAAACGTTGTAGGAATGGCTGTTTGGATCTTGATTGCTGGTTTGTCAGCCATAACCCGGCCGTTACTTTGGATTTCGGACGTTTGGATTTTTGATGGATCCTTCCGTTCTATATATAAGCATCTTTCAGTCGATTATTATCGAGTTATTTAAGGTCTAATAGTTTGCTTTTTTCATACGATAGCAGGTTA
TTTGTTATAAAGTGCAGGCTTTCGGTTGAGATGTCTAAGTGCCCTAGGGTTATTCGTGCAATGCAAAATTCCATCTTATATTCATTTTCCGAACAGTCTACAGTCTAATAAAAAGAAACAGTGGTGTATTCAAATCTATTTAGTCCTTAGGGTTGGGTATCTTAGAAGGTTTGCCCATTCATGTCTTAAACACGTTGTAT
ATGCGATTTGTTTTGGTCCATCCTCAAATGTTCCCTCATAATAGAACAGTAGATAATTTCTTCACCCAAATCTGTTGTTTTTTTCCCTTTTTCTTAGTTAAGGTTATATTAAAATGTGATTGGGTCATACACACTATACATTGTATATACATTTTCACGTTGACAGCAATCCACAGGTGAAATTTGGT

Intron 3 GTATGTATGG ... AACGTTGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	1	0
A2	60	2	5	1
A3	55.56	2	5	0
A4	100	0	3	1
A5	40	6	7	1
A6	66.67	7	13	15
A7	76.47	2	9	4
A8	65.85	7	17	10
A9	66.67	6	14	10
A10	75	3	9	9

>TRINITY_DN43114_c0_g1_i11 from sample A9 / Example spliced isoform

CTTTTGTCAGAATAGTTGCGAAACTGGACTGGAATTTGAGTTAATTAGGCCCACGGGCCCGTACTTAGACAGGATAGAGGTAGATCGATTGCTTTTCCGACTAGAAACCGAGAAGTATCTGTCGTCTTGGGATGAGAGACTGGGAGAATTCTTCTGTAATTTCTATTTTTGGGGCTTCCTGTTCTTCGATTCGCAACCTC
TGCGTTTAAGAACTTGTTCGGCTATCTTTGAAGGTATTATTGGGTTTCAATTTAATCTACTCCCATTTTCTAGTGGGAGATTGTTCTGATTCCCAGACCTGAGGCTCTCTGATTGATTGTTTGGCGGACAATTAGAGGAGACAGGAGGCGCAGAATGGGGAGGGGAAAAGTCCAGCTGAAGAAAATCGAGAACAGGATCA
GCAGGCAGGTTACATTTTCTAAGCGCAGGAATGGTTTACTCAAGAAAGCTTACGAGCTCTCAGTGCTCTGCGATGTGGGTGCTCTGCGATGTCGAAATGCGGACTTATTGTTTTCTCCCCCAGAGGGAAGCTCTACGAATTCTCCAGGCCCTGGAATGGCTGTTTGGATCTTGAT

>TRINITY_DN43114_c0_g1_i10 from sample A9 / Example unspliced isoform:

CATTTTAAGCAATACGTACTCTTTTCTAATTGGGAAGAAAATACAGTTTAGATTTCTCCCGACATTACTAACATTGGAGGAATATATTTAGTCCATTTTAAGCAATACGTACTCTTTTCTAATTGGGAAGAAAATACAGTTTAGATTTCTCCCGACATTACTAACATTGGAGGAATATATTTAGTCCATTTTAAGCAATA
CGTACTCTTCTAATTGGGAAGACACTCCAGAGTTTAGAATTATGCCGACATTAGTAACATTTTCTTGTCATTGTTTTCCGTACTGGCTGTTTGTGCAGGGTTATATTTTTCTGAACAAGAGGTGTGTCTCTCCTTCGAGGCTAGGCCAGTGAGCGGCTATGGTCTTTGACAGAATAGTTGCGAAACTGGACCGGAATTTA
ACTTGATCAGGCCCACGGGCCCGTACTTAGACAGGATAGAGGTAGATCGATTGCTTTTCCGACTAGAAACCGAGAAGTATCTGTCGTCTTGGGATGAGAGACTGGGAGAATTCTTCTGTAATTTCTATTTTTGGGGCTTCCTGTTCTTCGATTCGCAACCTCTGCGTTTAAGAACTTGTTCGGCTATCTTTGAAGGTATT
ATTGGGTTTCAATTTAATCTACTCCCATTTTCTAGTGGGAGATTGTTCTGATTCCCAGACCTGAGGCTCTCTGATTGATTGTTTGGCGGACAATTAGAGGAGACAGGAGGCGCAGAATGGGGAGGGGAAAAGTCCAGCTGAAGAAAATCGAGAACAGGATCAGCAGGCAGGTTACATTTTCTAAGCGCAGGAATGGTTTA
CTCAAGAAAGCTTACGAGCTCTCAGTGCTCTGCGATGTGGGTGCTCTGCGATGTCGAAATGCGGACTTATTGTTTTCTCCCCCAGAGGGAAGCTCTACGAATTCTCCAGGCCCTGgtatgtatggttaatgcgtatttcccttaaaatgtttgattgctctttcgatctttggttaatgtagaagaatcaatcaaacgtt
gtagGAATGGCTGTTTGGATCTTGATTGCTGGTTTGTCAGCCATAACCCGGCCGTTACTTTGGATATAAGCATTTTTCAGTCAATTATTATCGAGTTATTTAAGGTCTAATAGTTTGCTTTCTTCATACGATAGCAGGTTATTTGTTATAAAGTGCAGGCTTTCGGTTGAGATGTCTAAGTGCCCTAGGGTTATTCGTGC
AATGCAAAATTCCATCTTATATTCATTTTCCGAACAGTCTACAGTCTAATAAAAGAAACAGTGGTGTATTCAAATCTATTTAGTCCTTGGGGTTGGGGTTGTGTATCTTAGGAGGTTTGCTTCCCATTCATGTCTTAAACACGTTGTATATGCGATTTGTTTTGGTCCATCCTCAAATGTTCCCTCATAATAGAACAGTA
GATAATTTCTTCACCCAAATCTGTTGTTTTTTTCCCTTTTTCTTAGTTAAGGTTATATTAAAATGTGATTGGGTCATACACACTATACATTGTATATACATTTTCACGTTGACAGCAATCCACAGGTGAAATTTGGTCACTAAATGATTTTTCCATCAAATACTGTCC