sp|O82337|AGP16_ARATH ----> Arabinogalactan protein 16

Intron 1 GTGAGTATTG ... TTATTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	79.29	30.3	29.3	116
A2	75.96	39.3	40	123
A3	79.11	49.7	26	188
A4	79.82	22.3	14	88.3
A5	73.16	29	8.7	79
A6	82.09	498.7	479.7	2285.3
A7	80.84	346.3	402	1460
A8	82.32	329.7	381.3	1535.3
A9	82.15	419.7	452.3	1929.7
A10	80.04	324	390	1298

>TRINITY_DN47248_c0_g3_i1 from sample A7 / Example spliced isoform

ATTGGGTGGGTGTGATTCCCCGCTGAGCAAATCCAGACTATAACGCTGGTAACTTTATCTACCAAATTAAGCTGAGATTTAGAGCCTTTAGCTGGACATCAAATTTAATTAAATTAACATTAACAGTCACCGGTGCTAAACAAAAGAACGTTGAAGATGAACCGTTGGGAACTTGGGAATGGCAGGTAATCATTCGGTCT
GTCAAAGAATATATTAAAAAGAGTAGAGACAAATGCGTGCCTGCCAGTGCCTGCCGGCAAACACAGAGGCCTGGCATGCTTCCTGCTCTTACCAGTACACAGCTGGCACCCGGAGGCGGTATTCCGGTATTGGAGAAGCCGCCGGATTGATGGTTTATATCGCAGCAGTACGATGGCCTTCTCGACGGTGTCGGCCGTTG
CGCTGCTGATGCTCTGTGTCGCCTTCTTGCTGATGAATCTCTTCGCACCTTCCGTCAATGCGCAGGCTCCCGCCCCTGCTCCTGTGTCCGACGGCACCGCCATCGACCAAGGAATAGCGTACGTTCTCTTATTCATGGCGC

>TRINITY_DN47248_c0_g3_i2 from sample A7 / Example unspliced isoform:

ATTGGGTGGGTGTGATTCCCCGCTGAGCAAATCCAGACTATAACGCTGGTAACTTTATCTACCAAATTAAGCTGAGATTTAGAGCCTTTAGCTGGACATCAAATTTAATTAAATTAACATTAACAGTCACCGGTGCTAAACAAAAGAACGTTGAAGATGAACCGTTGGGAACTTGGGAATGGCAGGTAATCATTCGGTCT
GTCAAAGAATATATTAAAAAGAGTAGAGACAAATGCGTGCCTGCCAGTGCCTGCCGGCAAACACAGAGGCCTGGCATGCTTCCTGCTCTTACCAGTACACAGCTGGCACCCGGAGGCGGTATTCCGGTATTGGAGAAGCCGCCGGATTGATGGTTTATATCGCAGCAGTAgtgagtattgtgagagtctggcacacttta
ttcctgcgctctgccggcgtaaggatcttgttccttgttctttcttttcttggtatccggcatcgacatttcttcttgttattttcagCGATGGCCTTCTCGACGGTGTCGGCCGTTGCGCTGCTGATGCTCTGTGTCGCCTTCTTGCTGATGAATCTCTTCGCACCTTCCGTCAATGCGCAGGCTCCCGCCCCTGCTCC
TGTGTCCGACGGCACCGCCATCGACCAAGGAATAGCGTACGTTCTCTTATTCATGGCGC

Intron 2 GTTAGATCTC ... GTTGTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	2.86	119	2	5
A2	2.19	134	4	2
A3	3.45	168	6	6
A4	0.94	105	2	0
A5	3.91	86	3	4
A6	2.83	2502	80	66
A7	2.2	1779	42	38
A8	3	1858	54	61
A9	2.87	2166	63	65
A10	3.04	1514	37	58

>TRINITY_DN45215_c0_g1_i1 from sample A8 / Example spliced isoform

CGGCCTTCCTGCAAACACAGAGGCAGGGCATGCCTGGAAAGTTGGACCCCATCCCATGTGCTCTTACCAATACACAGCTGACACGCACACATACATTACCCCATAATCGCTGCGTCGGACGAGCTTGGGTGTGCCACGTATGCATGTGAGGGAAGATGTGTGTGTGAATGGCGGTATTCTGGTAGTCGGATTGATGTTTT
ATGTGATGAAAGATAGGTGCGTGAATGGCGGTATTCCGGTATTGGAGAAGTCGTCGGATTGATGGTTTATATCGCAGCAAGAGGCGGTGTTTCTGTGTGTATTGTAATTGTGAGGGTCTGGCACACTTTATTCCTGCACTCTGCCGGCGTGAGGATCTTGTTCCTTGTCTTCTTTCTTTTCTTGGTATCCGTCGACATCG
ACATTTCTTCTTGTTACTTTCAGCGATGGCCTTCTCGATGATGTCCGTTACGGCGCTCCTGATGCTCTCTGTCGCCTTCTTGCTGATGAATCTCTTTGCATCTTCCGCAAATGCGCAGGCTCCCGCCCCTGCTCCCATGGCCGACGGCACCGCCATCGACCAAGGAATAGCCTGCGTGCTCTTGTTCCTGGCGCTGGCTT
TGACCTACCTCATCCATCCCCTCGACGGCTTCCCTTACAATCTCTTTTGAGGTTCCGGCGGTCCGTTGTGCGTTTCTTGACAGAAAAGAAAAGAAAAGATAGACAGAAAGGGCCTGGATTTGTATTATAGAGGGGTAACGGAACAATGTATATTGGATTTACGTTAGATTTTGATGACATGCCAGGCAGATCCGAGGAAT
TGATTCTGTTTTCCATCGATATTTATTTTGCGTATGTACATGCATCTAATTTATAGTTATTATTGACCAGTTCTATGCAATCTTTATAAAAAAAATTAAAGACTTATCAATGAATGCTATTCTAAGTCTTCAGTCTGCTCTTATTGCGTTCTTTAGAAGCTGGCTGCTGGCTTTTTCTCAG

>TRINITY_DN45215_c0_g1_i3 from sample A8 / Example unspliced isoform:

CGGCCTTCCTGCAAACACAGAGGCAGGGCATGCCTGGAAAGTTGGACCCCATCCCATGTGCTCTTACCAATACACAGCTGACACGCACACATACATTACCCCATAATCGCTGCGTCGGACGAGCTTGGGTGTGCCACGTATGCATGTGAGGGAAGATGTGTGTGTGAATGGCGGTATTCTGGTAGTCGGATTGATGTTTT
ATGTGATGAAAGATAGGTGCGTGAATGGCGGTATTCCGGTATTGGAGAAGTCGTCGGATTGATGGTTTATATCGCAGCAAGAGGCGGTGTTTCTGTGTGTATTGTAATTGTGAGGGTCTGGCACACTTTATTCCTGCACTCTGCCGGCGTGAGGATCTTGTTCCTTGTCTTCTTTCTTTTCTTGGTATCCGTCGACATCG
ACATTTCTTCTTGTTACTTTCAGCGATGGCCTTCTCGATGATGTCCGTTACGGCGCTCCTGATGCTCTCTGTCGCCTTCTTGCTGATGAATCTCTTTGCATCTTCCGCAAATGCGCAGGCTCCCGCCCCTGCTCCCATGGCCGACGgttagatctcgctcctccattttatttcgacaatgtggatctttacgggatttt
gatttaacgtaacggggattgattgaatgcatattgttgttgcagGCACCGCCATCGACCAAGGAATAGCCTGCGTGCTCTTGTTCCTGGCGCTGGCTTTGACCTACCTCATCCATCCCCTCGACGGCTTCCCTTACAATCTCTTTTGAGGTTCCGGCGGTCCGTTGTGCGTTTCTTGACAGAAAAGAAAAGAAAAGATA
GACAGAAAGGGCCTGGATTTGTATTATAGAGGGGTAACGGAACAATGTATATTGGATTTACGTTAGATTTTGATGACATGCCAGGCAGATCCGAGGAATTGATTCTGTTTTCCATCGATATTTATTTTGCGTATGTACATGCATCTAATTTATAGTTATTATTGACCAGTTCTATGCAATCTTTATAAAAAAAATTAAAG
ACTTATCAATGAATGCTATTCTAAGTCTTCAGTCTGCTCTTATTGCGTTCTTTAGAAGCTGGCTGCTGGCTTTTTCTCAG