NA ----> NA
Intron 1 GCCTTGGACA ... TGTTTATAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 6 | 5 | 1 |
| A2 | 21.21 | 13 | 2 | 5 |
| A3 | 20 | 4 | 1 | 1 |
| A4 | 25 | 6 | 2 | 2 |
| A5 | 12.5 | 7 | 1 | 1 |
| A6 | 14.29 | 6 | 0 | 2 |
| A7 | 24.44 | 17 | 1 | 10 |
| A8 | 31.91 | 16 | 7 | 8 |
| A9 | 28 | 18 | 7 | 7 |
| A10 | 30.61 | 17 | 7 | 8 |
>TRINITY_DN43176_c0_g1_i5 from sample A9 / Example spliced isoformCGAGAGTAGTTGCATGTAAGCAGAACCCAAACTTCGGATCTCACAGAACAGATGTTCCCATGTTGTAGCATCCTACATACAGACATTTATCTATTGAGTGTAACATTGGCGATTTTTCATTGAATTTCACAGAGAAGCTGGCTATGGAGGAGGAAAAAGCTGTCAAGTCCACAGTACTGGCATTGCCCGCTGCTGCAGTC
TGCGACCTCCTGTCGATTGGGGTCTGCCCTAGATGTATTTTCCGAGTTTTTGGTGTACATGGAGATGTGTACTCATCTTCTGTGCTATCAATTGCATCTGTAAGTTCTTGGCTGAAACCTTCAGTGAATTTCATGGAACTACCAAAATTCGAGGAGAATATTGGTTCAATGAAAGTTAAAGACAGTTGTCATTCTACTGA
AGAAAAGAAAAGCAGAGAGGAAACATGCATAGTTTGTTTGGGGGTTCTGCAAATGTTATGTGTTGATCAGATTCAAGAATTGACAACATGCAAGGGTACAGTCAATAACATGTTTGAGGCTGCAGTTGCTATATTGGAGACGCTTCAACGTGAAGGTCATCAATTCAATAGTTTTTGTCTTGAAGTTTCCATTCCACCTG
TGATTCTTATACGGGACCATGCTCTTTGGCTGTACATCAAACAAACTTATGGATCAGAAAACTGGTTTAAGGATGTTGCTGTTACAGACCGTCTTTCTGTGAAGGATGCTTTGAAGTTGTCACTGACCAAAACACTGGAAGACTTACTGGGAAAAAATTCAGACACAAATTCATCATTTCGGATTGCGTTGGTTTACAAG
CATACGGAAGCATCTTTAGAACTTGATTTTGTTCATGGTTCAAAGGAAAATAATCTAAAACGAAGAAAAATAGGGGAAAACACTGGCATTCATAATGGTAACCTTGCAGCAATCAATGCAGCCAGGACAACATCTAATGCTGGTGAATCTTTTGCAGCAGTTCAGCGTACTCTGAATTCCATGTCTGAAGATGATTTTGC
TAAAAAATATGAATGTCCTCCAAAGAAGCTTTATGAACCATGCCAAATTACATCTTTATGCTATCGGACATCCATATACATTGGTGGGAGATATTTAAAGTACTCAAGAAATGTGAGCCAGACATGTTGGATGATTGACGATGAAAGAATGGGAGAAGCCTCAGTAGAGGAGCTAATAGGAAATGCCATACTTCCATACT
TAAGAGGCGACAAATATAAGTTTCATGCGGCTGGCAGAGAAGACATTGATGTTCGGATGTTGGGTTCAGGGCGACCCTTTCTTTTTGAAGTCCTGAATGCTCGTTTTATCCCAACAAGTGCTGATATAATGGAATTGGAGACTAAGATCAATAATTCAAAAGATGGAATTGTAAAGGTGAGGGAGCTAAAGGGGGTTGGG
AGTGATGCTTGGAATCTAATGCGGGAAGGGGAAGCTGAAAAACAGAAGCAATATGCTGCAGTAGTCTGGATTTCTCGCACCCTTACTGATGAAGACTTTAAACGCATATCTGAGATAAAAGAGCTGGAAATTGAACAAAAGACTCCAATTAGAGTGCTTCATCGCCGTAGTCCTTTAGTACGGAAGCGACTAATACACTG
GATGAAGGCCGAAGGCATTAAAGGAAGCAGTCAATATTTCTTGCTGCATCTATGTACTCAGGCTGGGACTTATATCAAGGAATTTGTACATGGCGATCTTGGACGCACTTATCCCAACATAGGCTCTTTATTGAGCTGCGTTGCAGAGATCCTGCAACTTGATGTAACAGATGTCAAGATGGATTGTTTTGACTAAAATG
TCAAGAGCTATCCAGACAACGAAGGACCCATTGTTAAAGATTGTTTGATAATCATTGTTAAAAGGTTATTAGCATTTACAACTCTGGCAAATATTCAGAGTTCATACTAAACACTGATACATTTACTGTTACATCAAGGATAGCTTGATGTAATGAGATCTCCTTTTGAGGAAGTCTTCATTGGAAGAGGCAATAGAGAA
CACAAGCTGCAAACTTGAAGTGGAAGCTGTATTTTTATATTGGCAGATGAATTTCCAGGCCATTCTAGTTTTGATATTTTATATAAGAAAGAATAGTTGCATTTATTCTCATTAATATGATGTTTCCAAGAAGTTATATTTGCAATTCTCATCATCATAATTTTTTTTATTTAAATTGTAATTTGTAATATTAAAAGAAC
TCGTTGATAACAATGAATGAAG
>TRINITY_DN43176_c0_g1_i7 from sample A9 / Example unspliced isoform:ATGGAGGAGGAAAAAGCTGTCAAGTCCACAGTACTGGCATTGCCCGCTGCTGCAGTCTGCGACCTCCTGTCGATTGGGGTCTGCCCTAGATGTATTTTCCGAGTTTTTGGTGTACATGGAGATGTGTACTCATCTTCTGTGCTATCAATTGCATCTGTAAGTTCTTGGCTGAAACCTTCAGTGAATTTCATGGAACTACC
AAAATTCGAGGAGAATATTGGTTCAATGAAAGTTAAAGACAGTTGTCATTCTACTGAAGAAAAGAAAAGCAGAGAGGAAACATGCATAGTTTGTTTGGGGGTTCTGCAAATGTTATGTGTTGATCAGATTCAAGAATTGACAACATGCAAGGGTACAGTCAATAACATGTTTGAGGCTGCAGTTGCTATATTGGAGACGC
TTCAACGTGAAGGTCATCAATTCAATAGTTTTTGTCTTGAAGTTTCCATTCCACCTGTGATTCTTATACGGGACCATGCTCTTTGGCTGTACATCAAACAAACTTATGGATCAGAAAACTGGTTTAAGGATGTTGCTGTTACAGACCGTCTTTCTGTGAAGGATGCTTTGAAGTTGTCACTGACCAAAACACTGGAAGAC
TTACTGGGAAAAAATTCAGACACAAATTCATCATTTCGGATTGCGTTGGTTTACAAGCATACGGAAGCATCTTTAGAACTTGATTTTGTTCATGGTTCAAAGGAAAATAATCTAAAACGAAGAAAAATAGGgccttggacaaaactgagttgtgagatgcctgtgtttataagGGAAAACACTGGCATTCATAATGGTAA
CCTTGCAGCAATCAATGCAGCCAGGACAACATCTAATGCTGGTGAATCTTTTGCAGCAGTTCAGCGTACTCTGAATTCCATGTCTGAAGATGATTTTGCTAAAAAATATGAATGTCCTCCAAAGAAGCTTTATGAACCATGCCAAATTACATCTTTATGCTATCGGACATCCATATACATTGGTGGGAGATATTTAAAGT
ACTCAAGAAATGTGAGCCAGACATGTTGGATGATTGACGATGAAAGAATGGGAGAAGCCTCAGTAGAGGAGCTAATAGGAAATGCCATACTTCCATACTTAAGAGGCGACAAATATAAGTTTCATGCGGCTGGCAGAGAAGACATTGATGTTCGGATGTTGGGTTCAGGGCGACCCTTTCTTTTTGAAGTCCTGAATGCT
CGTTTTATCCCAACAAGTGCTGATATAATGGAATTGGAGACTAAGATCAATAATTCAAAAGATGGAATTGTAAAGGTGAGGGAGCTAAAGGGGGTTGGGAGTGATGCTTGGAATCTAATGCGGGAAGGGGAAGCTGAAAAACAGAAGCAATATGCTGCAGTAGTCTGGATTTCTCGCACCCTTACTGATGAAGACTTTAA
ACGCATATCCGAGATAAAAGAGCTGGTAGGCTTCTAAATTCTAGTATACATTCTCTTTGTGTATTCCAGTTTAGTTAACAATCTTGGGAAATGCTGTTCTTCCTCTAGCCTTAGGAAGAGGAACAACTTATCTGTGGGATCCTCGCATTTGAGAGAACAACTTTTCTGTAGGCTTGTATATTTGTT
Intron 2 GTAAGCAGAA ... AATTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 61.11 | 7 | 4.9 | 11 |
| A2 | 46.02 | 16.4 | 2.4 | 14 |
| A3 | 49.87 | 14 | 3.9 | 13.9 |
| A4 | 66.67 | 5 | 4 | 10 |
| A5 | 50 | 3 | 0 | 3 |
| A6 | 61.36 | 4.4 | 2.4 | 7 |
| A7 | 48.74 | 8.4 | 5.2 | 8 |
| A8 | 64.29 | 5 | 2 | 9 |
| A9 | 61.54 | 5 | 0 | 8 |
| A10 | 41.94 | 18 | 0 | 13 |
>TRINITY_DN113573_c2_g1_i2 from sample A1 / Example spliced isoformGCGATAAAATCCGCGCCTTCAATAGCCAACAACAATCGGAGAACATTCAAAAATCGAGAGTAGTTGCATAGAAGCTGGCCATGGAGGAGGAAAAAGCTGTCAAGTCCACAGTACTGGCATTGCCCGCTGCTGCAGTCTGCGACCTCCTGTCGATTGGGGTCTGCCCTAGATGTATTTTCCGAGTTTTTGGTGTACGTGGA
GATGTGTACTCATCTTCTGTGCTATCAATTGCATCTGTAAGTTCTTGGCTGAAACCTTCAGTGAATTTCATGGAACTACCAAAATTCGAGGAGAATATTGGTTCAATGAAAGTTAAAGACAGTTGTCATTCTACTGAAGAAAAGAAAAGCAGAGAGGAAACATGCATAGTTTGTTTGGGGGTTCTGCAAATGTTATGTGT
TGATCAGATTCAAGAATTGACAACATGCAAGGGTACAGTCAATAACATGTTTGAGGCTGCAGTTGCTATATTGGAGACGCTTCAACGTGAAGGTCATCAATTCAATAGTTTTTGTCTTGAAGTTTCCATTCCACCTGTGATTCTTATACGGGACCATGCTCTTTGGCTGTACATCAAACAAACTTATGGATCAGAAAACT
GGTTTAAGGATGTTGCTGTTACAGACCGTCTTTCTGTGAAGGATGCTTTGAAGTTGTCACTGACCAAAACACTGGAAGACTTACTGGGAAAAAATTCAGACACAAATTCATCATTTCGGATTGCGTTGGTTTACAAGCATACGGAAGCATCTTTAGAACTTGATTTTGTTCATGGTTCAAAGGAAAATAATCTAAAACGA
AGAAAAATAGGTATGACTCAGTTTCTTGGCAATATTTTACATCATTGTTTTTGAGCCAAAATCACTTAATTTTTGTGAAGAGTCTCCAGAGCCTCGTGACTTACAAGTTACATATACTGGGACATATTATTGAGCTTCCAGGGCCTTGGACAAAACTGAGTTGTGAGATGCCTGTGTTTATAAGTGAG
>TRINITY_DN113573_c2_g1_i5 from sample A1 / Example unspliced isoform:GCGATAAAATCCGCGCCTTCAATAGCCAACAACAATCGGAGAACATTCAAAAATCGAGAGTAGTTGCATgtaagcagaacccaaacttcggatctcacagaacagatgttcccatgttgtagcatcctacatacagacatttatctattgagtgtaacattggcgatttttcattgaatttcacagAGAAGCTGGCCATG
GAGGAGGAAAAAGCTGTCAAGTCCACAGTACTGGCATTGCCCGCTGCTGCAGTCTGCGACCTCCTGTCGATTGGGGTCTGCCCTAGATGTATTTTCCGAGTTTTTGGTGTACGTGGAGATGTGTACTCATCTTCTGTGCTATCAATTGCATCTGTAAGTTCTTGGCTGAAACCTTCAGTGAATTTCATGGAACTACCAAA
ATTCGAGGAGAATATTGGTTCAATGAAAGTTAAAGACAGTTGTCATTCTACTGAAGAAAAGAAAAGCAGAGAGGAAACATGCATAGTTTGTTTGGGGGTTCTGCAAATGTTATGTGTTGATCAGATTCAAGAATTGACAACATGCAAGGGTACAGTCAATAACATGTTTGAGGCTGCAGTTGCTATATTGGAGACGCTTC
AACGTGAAGGTCATCAATTCAATAGTTTTTGTCTTGAAGTTTCCATTCCACCTGTGATTCTTATACGGGACCATGCTCTTTGGCTGTACATCAAACAAACTTATGGATCAGAAAACTGGTTTAAGGATGTTGCTGTTACAGACCGTCTTTCTGTGAAGGATGCTTTGAAGTTGTCACTGACCAAAACACTGGAAGACTTA
CTGGGAAAAAATTCAGACACAAATTCATCATTTCGGATTGCGTTGGTTTACAAGCATACGGAAGCATCTTTAGAACTTGATTTTGTTCATGGTTCAAAGGAAAATAATCTAAAACGAAGAAAAATAGGGGAAAACACTGGCATTCATAATGGTAACCTTGCAGCAATCAATGCAGCCAGGACAACATCTAATGCTGGTGA
ATCTTTTGCAGCAGTTCAGCGTACTCTGAATTCCATGTCTGAAGATGATTTTGCTAAAAAATATGAATGTCCTCCAAAGAAGCTTTATGAACCATGCCAAATTACATCTTTATGCTATCGGACATCCATATACATTGGTGGGAGATATTTAAAGTACTCAAGAAATGTGAGCCAGACATGTTGGATGATTGACGATGAAA
GAATGGGAGAAGCCTCAGTAGAGGAGCTAATAGGAAATGCCATACTTCCATACTTAAGAGGCGACAAATATAAGTTTCATGCGGCTGGCAGAGAAGACATTGATGTTCGGATGTTGGGTTCAGGGCGACCCTTTCTTTTTGAAGTCCTGAATGCTCGTTTTATCCCAACAAATGCTGATATAATGGAACTGGAGACTAAG
ATCAATAATTCAAAAGATGGAATTGTAAAGGTGAGGGAGCTAAAGGGGGTTGGGAGTGATGCTTGGAATCTAATGCGGGAAGGGGAAGCTGAAAAACAGAAGCAGTATGCTGCAGTAGTCTGGATTTCTCGCACCCTTACTGATGAAGACTTTAAACGCATATCTGAGATAAAAGAGCTGGAAATTGAACAAAAGACTCC
AATTAGAGTGCTTCATCGCCGTAGTCCTTTAGTACGGAAGCGACTAATACACTGGATGAAGGCCGAAGGCATTAAAGGAAGCAGTCAATATTTCTTGCTGCATCTATGTACTCAGGCTGGGACTTATATCAAGGAATTTGTACATGGCGATCTTGGACGC