sp|O80644|ACR9_ARATH ----> ACT domain-containing protein ACR9

Intron 1 GTAAGTGGTC ... TATCATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	16.17	267	27	76
A2	16.03	165	19	44
A3	15.1	208	14	60
A4	15.57	160	16	43
A5	11.11	104	12	14
A6	16.07	350	45	89
A7	14.1	591	57	137
A8	18.01	485	76	137
A9	11.42	628	41	121
A10	13.14	608	39	145

>TRINITY_DN48900_c1_g1_i5 from sample A7 / Example spliced isoform

AGCAGGTCTTCTAAATGACGTATCTCAAGTACTGTGGGATATCGAGCTTGTTGTTCAGAAAGTGAAGGTTTCGACAACTCCTGAAGGCAAAGTGATGGACATCTTCTTCATCATTGATAACAGATTCCAATAGTTTACAAGCTAAGAGCACCCTCATCAACAATGTTTCTGTTACAAGTAATAATTCATTAAGCCCTGCC
CATACCTTGCTACAAATATCATGCAAAGATTGCAGGGGCCTTCTTTATGATGTTCTGAGAACCTTGAATAGCTACAATATTCATATATGATATGGACGTTTCTCTACAAATCCCAAAGGAATCTGTGAGGTGGATTTATTTGCCTTGCAAGCTGACGGAAGGAAGATAATAGACCCACAAAAGCAAAGTTCTCTTTGTGG
ATGCCTGCAAAAGGAAATTTCCCACCCCATACGAATGATGGTTGTTGATTGTGGTCTTGATACAGAGTTTCTGCCATCTGGTTGCATCTGAAATAGAGTTATTTGGAAGGGATAGACTCAGAAACTGCGGCCTTGTACTCCCTATCTTTCTTTGCAAGTTGTTCTATGAATTTCTTATCAATTATTTTATTAATATCATT
TTTAACTCATGCTGCTACTTCAACATCAACGTGCAGAGTGTTTTCTCACTTGTTTGCTCTTGACAATTCCCAACAAACATCAATATGGGAAGGCAACAATCATTTGTTGCCAATTTAGTATTCAATTTATG

>TRINITY_DN48900_c1_g1_i7 from sample A7 / Example unspliced isoform:

CAGGATTTTGAAGTGCGTTATTATTACTTGATTAGAAGTTGTGTTTTGAATGATCACCATTTCTACAAATGTTTCTTTAGACAAATAGTTTGCTTTGGCAAATGGAAACCGCAATGACATGGCTTGACACTGTTCCTGTTTACATCAATCTGGATAACCATTGAACATGCTATTTAGTCAAGTAGAAATATTTACTTTTA
TCTTCAGGGATCTGTTGCATATTACAAAGAAACAAGAAGATGCTTGTGATAATTTAAAATCTGTCATTGGTGAATCCAGTACTCATTTTGAACTCCGTTTTGCTCCTCTTGAGCTTTTGGTACCGGAATATGCATTGATTTTTTTTACTCTCGCCGTCAATTGTCCCTGAGTTATTCACCTCTGAATTAACGCAATTTCA
AGCAGATTCCAATAGTTTACAAGCTAAGAGCACCCTCATCAACAATGTTTCTGTTACAAGTAATAATTCATTAAGCCCTGCCCATACCTTGCTACAAATATCATGCAAAGATTGCAGGGGCCTTCTTTATGATGTTCTGAGAACCTTGAATAGCTACAATATTCATgtaagtggtcattttattgtgcattgtaactttg
taagtgtgcttgttttagatgatttgtttatttggtttgtttttcttattttactatcatgcagATATGATATGGACGTTTCTCTACAAATCCCAAAGGAATCTGTGAGGTGGATTTATTTGCCTTGCAAGCTGACGGAAGGAAGATAATAGACCCACAAAAGCAAAGTTCTCTTTGTGGATGCCTGCAAAAGGAAATTT
CCCACCCCATACGAATGATGGTTGTTGATTGTGGTCTTGATACAGAGTTTCTGCCATCTGGTTGCATCTGAAATAGAGTTATTTGGAAGGGATAGACTCAGAAACTGCGGCCTTGTACTCCCTATCTTTCTTTGCAAGTTGTTCTATGAATTTCTTATCAATTATTTTATTAATATCATTTTTAACTCATGCTGCTACTT
CAACATCAACGTGCAGAGTGTTTTCTCACTTGTTTGCTCTTGACAATTCCCAACAAACATCAATATGGGAAGGCAACAATCATTTGTTGCCAATTTAGTATTCAATTTATG

Intron 2 GTCAGGATTT ... TATCGTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	13.85	252	42	39
A2	14.94	168	34	25
A3	17.23	185	45	32
A4	13.48	199	22	40
A5	17.45	97	25	16
A6	31.63	214	151	47
A7	23.92	431	211	60
A8	43.86	297	378	86
A9	27.89	340	199	64
A10	23.09	358	147	68

>TRINITY_DN48900_c1_g1_i10 from sample A7 / Example spliced isoform

GGTTTGCTGATGTAGACGTATCTCAAGTACTGTGGGATATCGAGCTTGTTGTTCAGAAAGTGAAGGTTTCGACAACTCCTGATGGCAAAGTGATGAACCTCTTCTTCATTATTGATAACAGGGATCTGTTGCATTCTACAAAGAGGCAAGAAGATGTCTGTGATAATTTAAAATCTGTCATTGGTGAATCCAGTACTCAT
TGTGAACTTCAGTTAAGTGGTCACCAGAATATGCACCGATTTCTTTACTCTCACCGTCAATTGTCGCTGAGTTATTCAACTTAGAATTAACGCAATTTCAGGCAGATTCTAATAGTTTACAAGCTAGGAACACTCTCATCAACAAAGTTTCTGTTACAATGGATAATTCATTAAGCCCTGCCCATACCTTGCTACAAATA
TCATGCAAAGATCGCAGGGGCCTTCTTTAGGATGTTCTCAGAACCTTGAAGGACTACAATATTCAGGAATTCAACAGCAGAACAAATCAAGATCCAGAATCTAAGGGAAGGCATGGGGAGTCTAAAAATGAGTTGGCAGGATTTGTGG

>TRINITY_DN48900_c1_g1_i2 from sample A7 / Example unspliced isoform:

TGTTCAGAAAGTGAAGGTTTCGACAACTCCTGATGGCAAAGTGATGGACCTCTTCTTCATTATTGATAACAGgtcaggattttgaagtgcattattattacttgattagtagttgtattttgaacgatcagcatttccacaaatgtttctttagacaaatagtttgctttggcaaatccaaacctcaatgacatggcttg
acactgttcctgtttacatcaatctggataaccattgaacatgctatttagtcaagtggaaatattttatgtttaaacaattacttttatcgtacagGGATCTGTTGCATTCTACAAAGAGGCAAGAAGATGTCTGTGATAATTTAAAATCTGTCATTGGTGAATCCAGTACTCATTGTGAACTTCAGTTAAGTGGTCAC
CAGAATATGCACCGATTTCTTTACTCTCACCGTCAATTGTCGCTGAGTTATTCAACTTAGAATTAACGCAATTTCAGGCAGATTCTAATAGTTTACAAGCTAGGAACACTCTCATCAACAAAGTTTCTGTTACAATGGATAATTCATTAAGCCCTGCCCATACCTTGCTACAAATATCATGCAAAGATCGCAGGGGCCTT
CTTTAGGATGTTCTCAGAACCTTGAAGGACTACAATATTCAGGAATTCAACAGCAGAACAAATCAAGATCCAGAATCTAAGGGAAGGCATGGGGAGTCTAAAAATGAGTTGGCAGGATTTGTGG

Intron 3 GTCAGGATTT ... TATCGTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	17.11	252	52	32
A2	18.05	168	37	22
A3	22.27	185	53	27
A4	11.56	199	26	34
A5	21.77	97	27	19
A6	44.56	214	172	28
A7	37.35	431	257	44
A8	59.03	297	428	27
A9	42.28	340	249	35
A10	33.83	358	183	51

>TRINITY_DN48900_c1_g1_i10 from sample A7 / Example spliced isoform

GGTTTGCTGATGTAGACGTATCTCAAGTACTGTGGGATATCGAGCTTGTTGTTCAGAAAGTGAAGGTTTCGACAACTCCTGATGGCAAAGTGATGAACCTCTTCTTCATTATTGATAACAGGGATCTGTTGCATTCTACAAAGAGGCAAGAAGATGTCTGTGATAATTTAAAATCTGTCATTGGTGAATCCAGTACTCAT
TGTGAACTTCAGTTAAGTGGTCACCAGAATATGCACCGATTTCTTTACTCTCACCGTCAATTGTCGCTGAGTTATTCAACTTAGAATTAACGCAATTTCAGGCAGATTCTAATAGTTTACAAGCTAGGAACACTCTCATCAACAAAGTTTCTGTTACAATGGATAATTCATTAAGCCCTGCCCATACCTTGCTACAAATA
TCATGCAAAGATCGCAGGGGCCTTCTTTAGGATGTTCTCAGAACCTTGAAGGACTACAATATTCAGGAATTCAACAGCAGAACAAATCAAGATCCAGAATCTAAGGGAAGGCATGGGGAGTCTAAAAATGAGTTGGCAGGATTTGTGG

>TRINITY_DN48900_c1_g1_i3 from sample A7 / Example unspliced isoform:

ATCGAGCTTGTTGTTCAGAAAGTGAAGGTTTCGACAACTCCTGATGGCAAAGTGATGAACCTCTTCTTCATTATTGATAACAGgtcaggattttgaagtgcattattattacttgattagtagttgtattttgaacgatcaacatttctacaaatgtttctttagacaattaatttgctttggaaaaatccaaacagcaa
tgacatgggacttgacactgttcatgtttccatcaatctaagtggaaatattttatgtttaaacaattacttttatcgtacagGGATCTGTTGCATTCTACAAAGAGGCAAGAAGATGTCTGTGATAATTTAAAATCTGTCATTGGTGAATCCAGTACTCATTGTGAACTTCAGTTAAGTGGTCACCAGAATATGCACCG
ATTTCTTTACTCTCACCGTCAATTGTCGCTGAGTTATTCAACTTAGAATTAACGCAATTTCAGGCAGATTCTAATAGTTTACAAGCTAGGAACACTCTCATCAACAAAGTTTCTGTTACAATGGATAATTCATTAAGCCCTGCCCATACCTTGCTACAAATATCATGCAAAGATCGCAGGGGCCTTCTTTAGGATGTTCT
CAGAACCTTGAAGGACTACAATATTCAGGAATTCAACAGCAGAACAAATCAAGATCCAGAATCTAAGGGAAGGCATGGGGAGTCTAAAAATGAGTTGGCAGGATTTGTGG