sp|Q9FKT8|COX15_ARATH ----> Cytochrome c oxidase assembly protein COX15

Intron 1 GTACTCTCTG ... TATTTTGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	86.66	1	8	3
A2	55.56	2	2	3
A3	100	0	2	4
A4	64.71	3	6	5
A5	100	0	6	8
A6	44.62	18	10	19
A7	60	8	13	11
A8	37.23	13.5	8	8
A9	61.11	7	10	12
A10	41.18	5	3	4

>TRINITY_DN39909_c0_g1_i3 from sample A8 / Example spliced isoform

GGAGAACACGGTTTTGCCTGGGGCTGAAAACCCTAGACGAGGGCTATAAATACAATTTCCTGCAATCTCTCTTGCACTGCGTGAAGGTTATGCTGCCTTTTGCTCACGGCATCGCGCGTTTTCAGTTTAGGATGCTCTGCATTATTTGGAAATGCTATAATGGGTGAAATGGGAGACCAAGCTGTAGATTTGCATTTTTG
GTGCTGGGTAGTCAACGACCTCTGCGTTTGATTTCTCTTTACAGTAAGGGTTTTCATTTTCCATGTAATTGTCCGATTTTTTTAATGATTTAGTTATATGTGGGAGGTAATTTAGGGGTTTTGATTTTAGAATGGATGCAGGCCCTGTGTACAGCACTATGCATGTGCATATTTGCTGAAGGGGGCTCTGCAAAATCATT
TTAGGGCGAATGGGCAGTCGAGTTTCAATGTTGATTGATTCCTTGACAATCATTTTCCCAACATTCATACCATCATTACTCTATATGTGCTGAGACTGTCGTTTAGGTTTTGGATGAATATTTTTGATCTTCAGGTTCTTTATGTGCGAATATATGTTCGTTAAGCTCTGTTAGTATTAAATATCTACTAGAAGTCATGA
GTAGTGAATTCTTTATATGGACTCGAAACCAGATCTACCAATTTGAAATCAAACCAGGTCCAAAACGATTGTGAAAATGCTGGGGGGCTCTGCAAAATCATTTTAGGGCGAATGGGCAGTCGAGTTTCA

>TRINITY_DN39909_c0_g1_i1 from sample A8 / Example unspliced isoform:

GGAGAACACGGTTTTGCCTGGGGCTGAAAACCCTAGACGAGGGCTATAAATACAATTTCCTGCAATCTCTCTTGCTGCGTGAAGGTTATGCTGCCTTTTGCTCACGGCATCGCGCGTTTTCAGTgtactctctgatgtcctatttttggctttttgaatgtttttgaatgtagtttcctctccaatcttagggtatttac
acaacgaactgtatgggtttattattttgtagTTAGGATGCTCTGCATTATTTGGAAATGCTATAATGGGTGAAATGGGAGACCAAGCTGTAGATTTGCATTTTTGGTGCTGGGTAGTCAACGACCTCTGTGTTTGATTACTCTTTACAGTAAGGGTTTTCATTTTCCATGTAATTGTCCGATTTTTTTAATGATTTAGT
TATATGTGGGAGGTAATTTAGGGGTTTTGATTTTAGAATGGATGCAGGCCCTGTGTACAGCACTATGCATGTGCATATTTGCTGAAGGGGGCTCTGCAAAATCATTTTAGGGCGAATGGGCAGTCGAGTTTCAATGTTGATTGATTCCTTGACAATCATTTTCCCAACATTCATACCATCATTACTCTATATGTGCTGAG
ACTGTCGTTTAGGTTTTGGATGAATATTTTTGATCTTCAGGTTCTTTATGTGCGAATATATGTTCGTTAAGCTCTGTTAGTATTAAATATCTACTAGAAGTCATGAGTAGTGAATTCTTTATATGGACTCGAAACCAGATCTACCAATTTGAAATCAAACCAGGTCCAAAACGATTGTGAAAATGCTGGGTGGAAATTAT
TCATATTATATAGAATTTGCCGCCTAGCTTCCATCACTGTACTGATAAAGTGGCCTTCATCAGTCTCTCTTAGTTATCAAGTTCCTCCACCTCAAGCATTCCAGTTATTCTATATTTGCATCATTGTTTACCGATGTGGCATCTCTTCAGCTTCACATGATGCAGTGATGTTTTTAATTTCTTTCAAGAATAAAGTCCCT
TGGATATATTTTGGGAACCTGGATTTGTGAAATGCAGGATGTAGGTATTTTCTATTATGTCCCATAGTTTGTAACTAGTTATGTCAATGTTTTACAGTTTATAACTCTTTAAATTAATTACAGTACATCTAGGCTGATGAATTTACTATTCT

Intron 2 GTACTCTCTG ... TATTTTGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	85.45	1.1	8	3
A2	55.56	2	2	3
A3	100	0	2	4
A4	64.71	3	6	5
A5	100	0	6	8
A6	46.87	17.8	12.5	19
A7	61.21	7.6	13	11
A8	37.97	13.1	8	8
A9	61.11	7	10	12
A10	41.18	5	3	4

>TRINITY_DN43502_c0_g1_i4 from sample A6 / Example spliced isoform

ATAATAGACTCGGAGTGGGAGAACACGGTTTTGCCTGGGGCTGAAAACCCTAGACGAGGGCTATAAATACAATTTCCTGCAATCTCACTTGCACTGCGTGAAGGTTATGCTGCCTTTTGCTCACGGCATCGCGCGTTTTCAGTTTAGGATGCTCTGCATTATTTGGAAATGCTATAATGGGTGAAATGGGAGACCAAGCT
GTAGATTTGCATTTTTGGTGCTGGGTAGTCAACGACCTCTGCGTTTGATTTCTCTTTACAGTAAGGGTTTTCATTTTCCATGTAATTGTCCGATTTTTTTAATGATTTAGTTATATGTGGGAGGTAATTTAGGGGTTTTGATTTTAGAATGGATGCAGGCCCTGTGTACAGCACTATGCATGTGCATATTTGCTGAAGGG
GGCTCTGCAAAATCATTTTAGGGCGAATGGGCAGTCGAGTTTCAATGTTGACAAGAAAAGAAAGAAGAAAAAAAGAAGAAAGTAAGGAAGAAAGAAACAGTAGAAAGAAAAAGAAAAGGG

>TRINITY_DN43502_c0_g1_i3 from sample A6 / Example unspliced isoform:

ATAATAGACTCGGAGTGGGAGAACACGGTTTTGCCTGGGGCTGAAAACCCTAGACGAGGGCTATAAATACAATTTCCTGCAATCTCACTTGCACTGCGTGAAGGTTATGCTGCCTTTTGCTCACGGCATCGCGCGTTTTCAGTgtactctctgatgtcctatttttggctttttgaatgtagtttcctctccaatcttag
ggtatttacacaacgaactgtatgggtttattattttgtagTTAGGATGCTCTGCATTATTTGGAAATGCTATAATGGGTGAAATGGGAGACCAAGCTGTAGATTTGCATTTTTGGTGCTGGGTAGTCAACGACCTCTGTGTTTGATTACTCTTTACAGTAAGGGTTTTCATTTTCCATGTAATTGTCCGATTTTTTTAA
TGATTTAGTTATATGTGGGAGGTAATTTAGGGGTTTTGATTTTAGAATGGATGCAGGCCCTGTGTACAGCACTATGCATGTGCATATTTGCTGAAGGGGGCTCTGCAAAATCATTTTAGGGCGAATGGGCAGTCGAGTTTCAATGTTGATTGATTCCTTGACAATCATTTTCCCAACATTCATACCATCATTACTCTATA
TGTGCTGAGACTGTCGTTTAGGTTTTGGATGAATATTTTTGATCTTCAGGTTCTTTATGTGCGAATATATGTTCGTTAAGCTCTGTTAGTATTAAATATCTACTAGAAGTCATGAGTAGTGAATTCTTTATATGGACTCGAAACCAGATCTACCAATTTGAAATCAAACCAGGTCCAAAACGATTGTGAAAATGCTGGGT
GGAAATTATTCATATTATATAGAATTTGCCGCCTAGCTTCCATCACTGTACTGATAAAGTGGCCTTCATCAGTCTCTCTTAGTTATCAAGTTCCTCCACCTCAAGCATTCCAGTTATTCTATATTTGCATCATTGTTTACCGATGTGGCATCTCTTCAGCTTCACATGATGCAGTGATGTTTTTAATTTCTTTCAAGAAT
AAAGTCCCTTGGATATATTTTGGGAACCTGGATTTGTGAAATGCAGGATGTAGGTATTTTCTATTATGTCCCATAGTTTGTAACTAGTTATG