sp|Q9LK32|Y3721_ARATH ----> Uncharacterized protein At3g27210

Intron 1 GTAAGCCCGA ... TGATGTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	23.26	66	20	20
A2	12.36	78	5	17
A3	15.48	71	10	16
A4	24.14	22	4	10
A5	8.77	26	2	3
A6	11.63	38	2	8
A7	10.97	138	16	18
A8	12.1	109	19	11
A9	12.88	115	20	14
A10	13.67	120	18	20

>TRINITY_DN109011_c1_g2_i4 from sample A4 / Example spliced isoform

GTTGGCAGGTGGCAACCTGTCAGCCCAGTAGATGCCAGTGACCGCCGGTAAACCGACAGACTGGTGTGGTGTGCAGAGATGCATGGAGAATAGAATAAAGGTTGCAGAGCTAAAAAAAAAGAACAGATTCTATTGCTTTGCTTGGAGAGCAAATAAAGGCTCGATGCCTTCGGAATTCGGCTTCTGTTCTCTAACAGGAC
CTCGTCGGCGGTTTTCTTGCGAAATTTGGTGGAGAATGAAGGTGCTCTAAAATTGGTGGTTTTGATTCAAAATTATGCTACAATTGGTAACTTTGGAGAGAAATAAGGAGAAATTGGCTTTGTATGTTATTTGAAGCGGCTACAGCATTTGTGCCATAAGTATAGCTATAAAAATCCTTAAACAGAATGGGAGCTTGTTT
CTCAGTTGAGGAAAGCAAGTCTAGTACAGACGGCAAATGCCAATCTTCAAAATTAAAGAAAGGGAGGGGAAAAACTGTTACTCCTGTTCCAGGTGCACCTCTTACAAACACAAAGAAAGAAGAAGCTAATGGATTCAAGCATTCTTCAGCAGAAGCTAACGGATTCAGGCATTCTTCAGCAGAAACTAATGGATTCAGGC
ATTCTTCAGCAGAAACTACTATTCACAATCTTGTGCACCTGAGTTCAGACAGGTCTGTAATGGCACACAGCAAACCTGAAGTTGCAAGTGTGAACTTCCATGTCAGTGAGGTTGAAACGGGCCATACTCGAACAGAGTCTTACGCAGGAAGTAAGGAGGAGTCATATTTTGATTCTGTAGCTTTCATAGAATCTGACTGT
GATGAAGACTTCTTAAGTGTCAATGGAGACTTTTCACTTTCAGCAGGAAACACCTGGAGTCTTTCAAACAGCACCCAAGTAACACCTCGGCCCAGTATTGCATCGCTGAAAGATAGAATCACTAAACTTGAAGATTTGAGTAGCAATAAGCCAACTTTGATCCATGTTCAAAAAGAAGGGAAGGAAGGAGATTTTATAGT
CACAGAAGCTATTCCAAGATGCCAGAGAAAAATGAAACTGAAAGAGTTCTTTATGGAAAAGTCATCAAATGAAGATGATACTGTGGGTTTGGATCATTCTGTTTCTTTAGAGCCACAAGCAAATGGGGTTCCTGGGTCAAAGGATGATTATAATGCAGCTGCTGATGTAAAATATGCACTCTCAAAAGGTCACGGGGGGA
ATTCAAATCTGTTAATAGATACAGCAGAAAACAATGATGAAAATAAGTCACACAAGCAGCATGAGAGGCAGATGAGCAAATGTTGCCTGCCCCGCCCGGTGATGAATGTTAGCTTTAGTGAGAAAAGGAGATCATCGAGCCTGAATCACAGTCCCAAAGAAGAAAAGAAGAATTAGTCGAGTTCTATGTTAAGCAGTGAT
CCACAGGTCGACACTACAAGCTCATTCCATGTGAGTATGCCCTCTTTGTCGATTTCCATACAAATACAAGCTATGATTTCCATGTAAACTATGGGAAGCATTATGCATATGGAACAGATCTTGGAAAGACCTAGGCTGAATAGAATCACACTTGGAATGCTGTTTTATTTTTGTTAAAAATGGTGAACCCAATACCTTTT
ACTTCAGATATTAATAAATTGGGGTTTAAATAAAGTCAGCCGAGTGTAAGGTCTTTTAAGGACTGTGGGACATATCACCATAATGTGGGCCTTTTGAACGTTACATAACACTCACTTTTACATGTACAAAATCTTTATATGGACTTCAATATTCAGAGTTACAAACATACTTACAACAAAATTTTCACATGATCCAATCT
GGAAAAATCCTGCTCTACTACTATAAGCTCTCCTGCCTGGAGAAAAACTGCTGCTATGGCATTCTTGTCTGCAACTTTCTATTTGTCTTTGTCATGATAGATATGGCCTATATTGTCTCAATCATTAGCTTCTCAATTGACATGCGATACTTGAGTAACAATGTTGAAAACTATTTCTTTCAATTATTTATGAAAAGATG
ATCCATCTAGCTCCAAATGCAAACTAAATGTTCTCCAGTTGCAGCAGAGTTTGTAGTCCTAGTATCAAGAGATAATGTTTTCAATATCACTCTGAATGGAATCCACAGCTTTGCCG

>TRINITY_DN109011_c1_g2_i3 from sample A4 / Example unspliced isoform:

GTGCTCTAAAATTGGTGGTTTTGATTCAAAATTATGCTACAATTGGTAACTTTGGAGAGAAATAAGGAGAAATTGGCTTTGTATGTTATTTGAAGCGGCTACAGCATTTGTGCCATAAGTATAGCTATAAAAATCCTTAAACAGAATGGGAGCTTGTTTCTCAGTTGAGGAAAGCAAGTCTAGTACAGACGGCAAATGCC
AATCTTCAAAATTAAAGAAAGGGAGGGGAAAAACTGTTACTCCTGTTCCAGGTGCACCTCTTACAAACACAAAGAAAGAAGAAGCTAATGGATTCAAGCATTCTTCAGCAGAAGCTAACGGATTCAGGCATTCTTCAGCAGAAACTAATGGATTCAGGCATTCTTCAGCAGAAACTACTATTCACAATCTTGTGCACCTG
AGTTCAGACAGGTCTGTAATGGCACACAGCAAACCTGAAGTTGCAAGTGTGAACTTCCATGTCAGTGAGGTTGAAACGGGCCATACTCGAACAGAGTCTTACGCAGGAAGTAAGGAGGAGTCATATTTTGATTCTGTAGCTTTCATAGAATCTGACTGTGATGAAGACTTCTTAAGTGTCAATGGAGgtaagcccgatat
ttttatggaaaaatgattcattgcagttgtttataatattatatacaagttcaaaatcaccgatgtttgaaagttatgatttatcatgatacattgctgatgtacttctctgaaacttatttatttattttctttgtcacttaatctcagggaaataatggcatactattttggcctttctttaaattctttactttgtg
atgtgcagACTTTTCACTTTCAGCAGGAAACACCTGGAGTCTTTCAAACAGCACCCAAGTAACACCTCGGCCCAGTATTGCATCGCTGAAAGATAGAATCACTAAACTTGAAGATTTGAGTAGCAATAAGCCAACTTTGATCCATGTTCAAAAAGAAGGGAAGGAAGGAGATTTTATAGTCACAGAAGCTATTCCAAGAT
GCCAGAGAAAAATGAAACTGAAAGAGTTCTTTATGGAAAAGTCATCAAATGAAGATGATACTGTGGGTTTGGATCATTCTGTTTCTTTAGAGCCACAAGCAAATGGGGTTCCTGGGTCAAAGGATGATTATAATGCAGCTGCTGATGTAAAATATGCACTCTCAAAAGGTCACGGGGGGAATTCAAATCTGTTAATAGAT
ACAGCAGAAAACAATGATGAAAATAAGTCACACAAGCAGCATGAGAGGCAGATGAGCAAATGTTGCCTGCCCCGCCCGGTGATGAATGTTAGCTTTAGTGAGAAAAGGAGATCATCGAGCCTGAATCACAGTCCCAAAGAAGAAAAGAAGAATTAGTCGAGTTCTATGTTAAGCAGTGATCCACAGGTCGACACTACAAG
CTCATTCCATTGCTTTCTGTAGAAATTTGGTAGATGGAGCAATGGAGAATGCAAACTAAATGGATTTCTTGGGAGAAATACAGCTAATTACATGTTATTCCAGGACATAGGGTGTGGATAGTTTCTGGGTATTGTACTATTAGAATACAAGCTGAAAGGGCTTGGTACAGAGAAGATAGACAACTTTTTTTTGAAAAGGT
TAAAATAAGGACGACACATGTTTGGGGAAGGGATTTTCTTTTATGTGGGGATTAGTGTGTATATTGTATTATCGTGAACTGCCAAAAAAGTTATTGAAAGAGAAGCACATAGGAACAGATGAATCAGGGTAAGAATATTGTTTTTGTGACCATATTTAAAGCTAAGAAATATAATGCTATTTCCAAAGATAACTAGTCTT
CTGCTCGTGCAAGATAATTAGTAAACTTCATTATTTGGACCGGATGTGCAAAGTGGCGATGCACTTGAAATGTAGATAAGCTGGTTTTTATTTCTCATCCAGTCCCATTTTAACAGAATGTTGAAGCTGCTCAGAACTCAGTAGGCC

Intron 2 GTTGTCAGTG ... CTATGAGAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	21.47	75	7	34
A2	25.55	102	22	48
A3	22.93	79	18	29
A4	28.33	86	20	48
A5	24	38	6	18
A6	21.84	34	7	12
A7	24.75	114	14	61
A8	22.99	72	15	28
A9	26.95	122	17	73
A10	29.85	161	36	101

>TRINITY_DN42087_c0_g5_i2 from sample A9 / Example spliced isoform

GTCACAACTTACAATGGTTGGCAGGTGGCAACCTGTCAGCCCAGTAGATGCCAGTGACCGCCGGTAAACCGACAGACTGGTGTGGTGTGCAGAGATGCATGGAGAATAGAATAAAGGTTGCAGAGCTAAAAAAAAAGAACAGATTCTATTGCTTTGCTTGGAGAGCAAATAAAGGCTCGATGCCTTCGGAATTCGGCTTC
TGTTCTCTAACAGGACCTCGTCGGCGGTTTTCTTGCGAAATTTGGTGGAGAATGAAGGTGCTCTAAAATTGGTGGTTTTGATTCAAAATTATGCTACAATTGGTAACTTTGGAGAGAAATAAGGAGAAATTGGCTTTGTATGTTATTTGAAGCGGCTACAGCATTTGTGCCATAAGTATAGCTATAAAAATCCTTAAACA
GAATGGGAGCTTGTTTCTCAGTTGAGGAAAGCAAGTCTAGTACAGACGGCAAATGCCAATCTTCAAAATTAAAGAAAGGGAGGGGAAAAACTGTTACTCCTGTTCCAGGTGCACCTCTTACAAACACAAAGAAAGAAGAAGCTAATGGATTCAAGCATTCTTCAGCAGAAGCTAACGGATTCAGGCATTCTTCAGCAGAA
ACTAATGGATTCAGGCATTCTTCAGCAGAAACTACTATTCACAATCTTGTGCACCTGAGTTCAGACAGGTCTGTAATGGCACACAGCAAACCTGAAGTTGCAAGTGTGAACTTCCATGTCAGTGAGGTTGAAACGGGCCATACTCGAACAGAGTCTTACGCAGGAAGTAAGGAGGAGTCATATTTTGATTCTGTAGCTTT
CATAGAATCTGACTGTGATGAAGACTTCTTAAGTGTCAATGGAGACTTTTCACTTTCAGCAGGAAACACCTGGAGTCTTTCAAACAGCACCCAAGTAACACCTCGGCCCAGTATTGCATCGCTGAAAGATAGAATCACTAAACTTGAAGATTTGAGTAGCAATAAGCCAACTTTGATCCATGTTCAAAAAGAAGGGAAGG
AAGGAGATTTTATAGTCACAGAAGCTATTCCAAGATGCCAGAGAAAAATGAAACTGAAGGAGATTTTATAGTCACAGAAGCTATTCCAAGATGCCAGAGAAAAATGAAACTGAAAGAGTTCTTTATGGAAAAGTCATCAAATGAAGATGATACTGTGGGTTTGGATCATTCTGTTTCTTTAGAGCCACAAGCAAATGGGG
TTCCTGGGTCAAAGGATGATTATAATGCAGCTGCTGATGTAAAATATGCACTCTCAAAAGGTCACGGGGGGAATTCAAATCTGTTAATAGATACAGCAGAAAACAATGATGAAAATAAGTCACACAAGCAGCATGAGAGGCAGATGAGCAAATGTTGCCTGCCCCGCCCGGTGATGAATGTTAGCTTTAGTGAGAAAAGG
AGATCATCGAGCCTGAATCACAGTCCCAAAGAAGAAAAGAAGAATTAGTCGAGTTCTATGTTAAGCAGTGATCCACAGGTCGACACTACAAGCTCATTCCATGTGAGTATGCCCTCTTTGTCGATTTCCATACAAATACAAGCTATGATTTCCATGTAAACTATGGGAAGCATTATGCATATGGAACAGATCTTGGAAAG
ACCTAGGCTGAATAGAATCACACTTGGAATGCTGTTTTATTTTTGTTAAAAATGGTGAACCCAATACCTTTTACTTCAGATATTAATAAATTGGGGTTTAAATAAAGTCAGCCGAGTGTAAGGTCTTTTAAGGACTGTGGGACATATCACCATAATGTGGGCCTTTTGAACGTTACATAACACTCACTTTTACATGTACA
AAATCTTTATATGGACTTCAATATTCAGAGTTACAAACATACTTACAACAAAATTTTCACATGAT

>TRINITY_DN42087_c0_g5_i4 from sample A9 / Example unspliced isoform:

GTCACAACTTACAATGGTTGGCAGGTGGCAACCTGTCAGCCCAGTAGATGCCAGTGACCGCCGGTAAACCGACAGACTGGTGTGGTGTGCAGAGATGCATGGAGAATAGAATAAAGGTTGCAGAGCTAAAAAAAAAGAACAGATTCTATTGCTTTGCTTGGAGAGCAAATAAAGGCTCGATGCCTTCGGAATTCGGCTTC
TGTTCTCTAACAGGACCTCGTCGGCGGTTTTCTTGCGAAATTTGGTGGAGAATGAAGgttgtcagtgctatgatcgctatgagaagGTGCTCTAAAATTGGTGGTTTTGATTCAAAATTATGCTACAATTGGTAACTTTGGAGAGAAATAAGGAGAAATTGGCTTTGTATGTTATTTGAAGCGGCTACAGCATTTGTGCC
ATAAGTATAGCTATAAAAATCCTTAAACAGAATGGGAGCTTGTTTCTCAGTTGAGGAAAGCAAGTCTAGTACAGACGGCAAATGCCAATCTTCAAAATTAAAGAAAGGGAGGGGAAAAACTGTTACTCCTGTTCCAGGTGCACCTCTTACAAACACAAAGAAAGAAGAAGCTAATGGATTCAAGCATTCTTCAGCAGAAG
CTAACGGATTCAGGCATTCTTCAGCAGAAACTAATGGATTCAGGCATTCTTCAGCAGAAACTACTATTCACAATCTTGTGCACCTGAGTTCAGACAGGTCTGTAATGGCACACAGCAAACCTGAAGTTGCAAGTGTGAACTTCCATGTCAGTGAGGTTGAAACGGGCCATACTCGAACAGAGTCTTACGCAGGAAGTAAG
GAGGAGTCATATTTTGATTCTGTAGCTTTCATAGAATCTGACTGTGATGAAGACTTCTTAAGTGTCAATGGAGACTTTTCACTTTCAGCAGGAAACACCTGGAGTCTTTCAAACAGCACCCAAGTAACACCTCGGCCCAGTATTGCATCGCTGAAAGATAGAATCACTAAACTTGAAGATTTGAGTAGCAATAAGCCAAC
TTTGATCCATGTTCAAAAAGAAGGGAAGGAAGGAGATTTTATAGTCACAGAAGCTATTCCAAGATGCCAGAGAAAAATGAAACTGAAGGAGATTTTATAGTCACAGAAGCTATTCCAAGATGCCAGAGAAAAATGAAACTGAAAGAGTTCTTTATGGAAAAGTCATCAAATGAAGATGATACTGTGGGTTTGGATCATTC
TGTTTCTTTAGAGCCACAAGCAAATGGGGTTCCTGGGTCAAAGGATGATTATAATGCAGCTGCTGATGTAAAATATGCACTCTCAAAAGGTCACGGGGGGAATTCAAATCTGTTAATAGATACAGCAGAAAACAATGATGAAAATAAGTCACACAAGCAGCATGAGAGGCAGATGAGCAAATGTTGCCTGCCCCGCCCGG
TGATGAATGTTAGCTTTAGTGAGAAAAGGAGATCATCGAGCCTGAATCACAGTCCCAAAGAAGAAAAGAAGAATTAGTCGAGTTCTATGTTAAGCAGTGATCCACAGGTCGACACTACAAGCTCATTCCATTGCTTTCTGTAGAAATTTGGTAGATGGAGCAATGGAGAATGCAAACTAAATGGATTTCTTGGGAGAAAT
ACAGCTAATTACATGTTATTCCAGGACATAGGGTGTGGATAGTTTCTGGGTATTGTACTATTAGAATACAAGCTGAAAGGGCTTGGTACAGAGAAGATAGACAACTTTTTTTTGAAAAGGTTAAAATAAGGACGACACATGTTTGGGGAAGGGATTTTCTTTTATGTGGGGATTAGTGTGTATATTGTATTATCGTGAAC
TGCCAAAAAAGTTATTGAAAGAGAAGCACATAGGAACAGATGAATCAGGGTAAGAATATTGTTTTTGTGACCATATTTAAAGCTAAGAAATATAATGCTATTTCCAAAGATAACTAGTCTTCTGCTCGTGCAAGATAATTAGTAAACTTCATTATTTGGACCGGATGTGCAAAGTGGCGATGCACTTGAAATGTAGATAA
GCTGGTTTTTATTTCTCATCCAGTCCCATTTTAACAGAATGTTGAAGCTGCTCAGAACTCAGTAGGCATGTGATAACAGATCACTCTAATTTTAGCCCATTCTATTTAGATGATTAGGTAGTATAAGTGTTGCTTAAAGATCGCGTGCATCACCTTGGAGCTTTGTTTCAATGTTTGTGATGAAGTTACAATGTGCTGTG
CTAT