sp|Q5YDB6|CPL1_ARATH ----> RNA polymerase II C-terminal domain phosphatase-like 1
Intron 1 GTAAGCAATA ... CGATTCTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 46.15 | 7 | 5 | 7 |
| A4 | 100 | 0 | 2 | 3 |
| A5 | 55.56 | 2 | 4 | 1 |
| A6 | 33.33 | 4 | 1 | 3 |
| A7 | 64.29 | 5 | 5 | 13 |
| A8 | 73.33 | 2 | 7 | 4 |
| A9 | 27.78 | 13 | 10 | 0 |
| A10 | 43.59 | 11 | 14 | 3 |
>TRINITY_DN48918_c0_g4_i1 from sample A7 / Example spliced isoformTGTCTCCATTAATACTTACAGCGACCAGACCAAGCACATACGCCGTTGTGAGGGAGACAGAGCGAACCCAAAATATTTGTCAGCAGGGGAAAGTTGTATGAAAATCCAATTGAACCTGCGTTGTTCCAGGGAAGGAGGCTCTACAGTAGCCTCTCTTTCTAACCATTCAGTACTCATCACTTCAAGTTGGACCTGCAGTA
GTCTGGTTGATACTACTGCAACCCCCGGCACTACTCAGCACTACTCCAGCGAAAACGGTGGTCTCCCGTGATCAATTTGCAGGCACGAAAATGCGTTGGAGATGATAAGGGAGATACGCCGACATGCAGCAGAAGTTTACAACATCATTCAAAAAAATAACAACACTTACAGGAAATTGTTTATAAGTTACTGCACTGGT
AATTGATGACCAACTGAAGGTTTGGGAGGACAAAGATCAACCTCGTGTTCATGTTGTTCCAGCTTTTGCACCATACTATGCTCCATTGGAAGAGAAAGGTCAACCTGTACCAATATTGTGTA
>TRINITY_DN48918_c0_g4_i2 from sample A7 / Example unspliced isoform:TGTCTCCATTAATACTTACAGCGACCAGACCAAGCACATACGCCGTTGTGAGGGAGACAGAGCGAACCCAAAATATTTGTCAGCAGGGGAAAGTTGTATGAAAATCCAATTGAACCTGCGTTGTTCCAGGGAAGGAGGCTCTACAGTAGCCTCTCTTTCTAACCATTCAGTACTCATCACTTCAAGTTGGACCTGCAGTA
GTCTGGTTGATACTACTGCAACCCCCGGCACTACTCAGCACTACTCCAGCGAAAACGGTGGTCTCCCGTGATCAATTTGCAGGCACGAAAATGCGTTGGAGATGATAAGGGAGATACGCCGACATGCAGCAGgtaagcaataccactaccaaggtctggaattattctatgtcggaaacctagacttcatggtatccaat
atctctctcgcctattaaatggcgtgctaaacccaggaggcttcttcagtaagcccagggttcaacccattccgtgagagaagaaaaaatagatgggttactactctgtttcttctgggcttagaccctcgacttgaaaaaaaatagaaccgaagtcctttctgtagtaaatttttctcttccactgcgtatgctatagt
ttaagcctgtaactgttcacctcataatgagggttcatcaagtagggtttagaaacagttagggttttaaattacataaagacttgtatcttatggtgttatccaaatggactgtgtttgaacctaaaatttaatctgagcgttatcctcagctctatgttctctctttgggagaagtataagtgaaataatacaaataa
aatttccaaagatggatttcgagtttttaaggatttaacttctaaataaaacctctattataatttttttaccggtaattatgtattgtatttggttaaatagaaaaataccgacccattctcagtctttgcataattcttttaaagaaaaacgccccctatcacagagagttaatcttagggttttctagttgaaaaat
taaaaaccggtataatcttggtggaagtaacaaaaggcccaacccagaacccgaatgggtgaaaaatgtaagcctatacaggaaactcgtttggactcttcctattgtatttcttttatctatgtatcgaaattctggaaagcataaagcatttaattctaaaatatacaggaatttaattctaaaatgtaagcctatac
aggaaactcgtttggactcttcctattgtatcattaactgttttcttttgtttcttttatctatgtatcaaaattctggaaagcataaagcatttaattctaaaatatacaggaatttatgtattttacttgactaatactctgatcctgtgcctaacgcgattcttagAAGTTTACAACATCATTCAAAAAAATAACAA
CACTTACAGGAAATTGTTTATAAGTTACTGCACTGGTAATTGATGACCAACTGAAGGTTTGGGAGGACAAAGATCAACCTCGTGTTCATGTTGTTCCAGCTTTTGCACCATACTATGCTCCATTGGAAGAGGTACTTCTCATTTATACTGTTTTGATCTGTTAGTATTATGAGAGATAATCATATCTTCGAGGAGTCCAA
TTTTGATATATCTACTAATTTCTTAGTTTTGTGCTCTAGAGAAAGTTCAACCTGTACCAATATTGTGTATTGCAAGAAATGTACCTTGTAATGTCAAAGGTGGTTTTTTTTAAAGATTTTGATGAGGGCCTTTCTCAAACAATGGCCAGAAT
Intron 2 GTAAGCAATA ... ACACTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 58.33 | 5 | 5 | 9 |
| A4 | 100 | 0 | 2 | 6 |
| A5 | 50 | 2 | 4 | 0 |
| A6 | 100 | 0 | 1 | 4 |
| A7 | 70 | 3 | 5 | 9 |
| A8 | 68.42 | 3 | 7 | 6 |
| A9 | 37.93 | 9 | 10 | 1 |
| A10 | 45.95 | 10 | 14 | 3 |
>TRINITY_DN48918_c0_g4_i3 from sample A7 / Example spliced isoformTGTCTCCATTAATACTTACAGCGACCAGACCAAGCACATACGCCGTTGTGAGGGAGACAGAGCGAACCCAAAATATTTGTCAGCAGGGGAAAGTTGTATGAAAATCCAATTGAACCTGCGTTGTTCCAGGGAAGGAGGCTCTACAGTAGCCTCTCTTTCTAACCATTCAGTACTCATCACTTCAAGTTGGACCTGCAGTA
GTCTGGTTGATACTACTGCAACCCCCGGCACTACTCAGCACTACTCCAGCGAAAACGGTGGTCTCCCGTGATCAATTTGCAGGCACGAAAATGCGTTGGAGATGATAAGGGAGATACGCCGACATGCAGCAGGAAATTGTTTATAAGTTACTGCACTGGTAATTGATGACCAACTGAAGGTTTGGGAGGACAAAGATCAA
CCTCGTGTTCATGTTGTTCCAGCTTTTGCACCATACTATGCTCCATTGGAAGAG
>TRINITY_DN48918_c0_g4_i2 from sample A7 / Example unspliced isoform:TGTCTCCATTAATACTTACAGCGACCAGACCAAGCACATACGCCGTTGTGAGGGAGACAGAGCGAACCCAAAATATTTGTCAGCAGGGGAAAGTTGTATGAAAATCCAATTGAACCTGCGTTGTTCCAGGGAAGGAGGCTCTACAGTAGCCTCTCTTTCTAACCATTCAGTACTCATCACTTCAAGTTGGACCTGCAGTA
GTCTGGTTGATACTACTGCAACCCCCGGCACTACTCAGCACTACTCCAGCGAAAACGGTGGTCTCCCGTGATCAATTTGCAGGCACGAAAATGCGTTGGAGATGATAAGGGAGATACGCCGACATGCAGCAGgtaagcaataccactaccaaggtctggaattattctatgtcggaaacctagacttcatggtatccaat
atctctctcgcctattaaatggcgtgctaaacccaggaggcttcttcagtaagcccagggttcaacccattccgtgagagaagaaaaaatagatgggttactactctgtttcttctgggcttagaccctcgacttgaaaaaaaatagaaccgaagtcctttctgtagtaaatttttctcttccactgcgtatgctatagt
ttaagcctgtaactgttcacctcataatgagggttcatcaagtagggtttagaaacagttagggttttaaattacataaagacttgtatcttatggtgttatccaaatggactgtgtttgaacctaaaatttaatctgagcgttatcctcagctctatgttctctctttgggagaagtataagtgaaataatacaaataa
aatttccaaagatggatttcgagtttttaaggatttaacttctaaataaaacctctattataatttttttaccggtaattatgtattgtatttggttaaatagaaaaataccgacccattctcagtctttgcataattcttttaaagaaaaacgccccctatcacagagagttaatcttagggttttctagttgaaaaat
taaaaaccggtataatcttggtggaagtaacaaaaggcccaacccagaacccgaatgggtgaaaaatgtaagcctatacaggaaactcgtttggactcttcctattgtatttcttttatctatgtatcgaaattctggaaagcataaagcatttaattctaaaatatacaggaatttaattctaaaatgtaagcctatac
aggaaactcgtttggactcttcctattgtatcattaactgttttcttttgtttcttttatctatgtatcaaaattctggaaagcataaagcatttaattctaaaatatacaggaatttatgtattttacttgactaatactctgatcctgtgcctaacgcgattcttagaagtttacaacatcattcaaaaaaataacaa
cacttacagGAAATTGTTTATAAGTTACTGCACTGGTAATTGATGACCAACTGAAGGTTTGGGAGGACAAAGATCAACCTCGTGTTCATGTTGTTCCAGCTTTTGCACCATACTATGCTCCATTGGAAGAGGTACTTCTCATTTATACTGTTTTGATCTGTTAGTATTATGAGAGATAATCATATCTTCGAGGAGTCCAA
TTTTGATATATCTACTAATTTCTTAGTTTTGTGCTCTAGAGAAAGTTCAACCTGTACCAATATTGTGTATTGCAAGAAATGTACCTTGTAATGTCAAAGGTGGTTTTTTTTAAAGATTTTGATGAGGGCCTTTCTCAAACAATGGCCAGAAT