sp|O65709|FAO4A_ARATH ----> Long-chain-alcohol oxidase FAO4A
Intron 1 GTTACTAAAA ... GATCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 3 | 3 |
| A2 | 85.71 | 1 | 7 | 5 |
| A3 | 90.48 | 1 | 10 | 9 |
| A4 | 71.43 | 1 | 2 | 3 |
| A5 | 86.67 | 1 | 5 | 8 |
| A6 | 100 | 0 | 4 | 2 |
| A7 | 60 | 2 | 4 | 2 |
| A8 | 100 | 0 | 3 | 1 |
| A9 | 100 | 0 | 4 | 4 |
| A10 | 84.62 | 1 | 7 | 4 |
>TRINITY_DN42307_c0_g1_i3 from sample A9 / Example spliced isoformCAGGTCCCTGGAACTTTAAACGCCATTTTATTCCACTCCAGCTCAATTACAGTGGATTCTGATGGAATCCAGCGGGAAAACTCAGAGGCAAGATTCAGAAGATGTAGCAATCGATTTAAGTCAATCATCCAACGATGTTCATGAACTTCTCAGAGGTGGCAGACCCAATTACCAGAACAATATATTTTCAAAATCTCAGA
TGGAAGCTTTGACTAGTCTCTGTGATACTCTGGTGCCTTCGCTGGATTTCGATGGAATGTCAAGCAGTAATAATGCGCAGGATAATGATGAACTTCGATCGTTTTATGGAGTTTCGGCATCTTCTGCTGGAATCCCTGACCATCTTGCAGGATATATATCCGAACGCTTAATGCATGCAGCTGTGGGTCTGATGAAGTTT
TCTTTGTGGCTTCTATCTACATGGTATGGGACATTTATCATGTGTGGCAGATTGTCTCTGTGCAGTCATTTCCCTTTTTTTCAGAGATTTCCTCTGATTTTACAGCACCGGCGGGAGGAAATCATGCTTTCATGGTCACACAGCTCCTGGTATATCTATCGTCTTCTGTTCAAGGGCATCAAATTCTTGTGCTGCCTTTC
ATTCTACACAAAGGTGGATGGGAAGAATGAGAATCCTTCATGGAGAGCTATTGGTTACTGTGGACCAGATCCAGAGGTGACAAGATAATCAATACACTGCGTAACGCCGGCTGTAACGTTATAGAAGAGAGCTCTCAGCTTGAACATTTATGGAAGCAGAAGATGGGAAGTAAAAGTGATGGCAGAAAGAAGGCAATCAC
AATAAAATGTGACATAGTTGTAGTAGGGTCAGGCACTGGAGGAGGAGTAGTTGCAGGGGTCCTTGCAAAGGCTGGCTACAAAGTTTTAGTTCTTGAAAAAGGGAAGTACTTTGCCAGGAATAAACTGTCCCTACTGGAAGGTCCATCGTTGGATCAGATGTATGAGGGAGGAGGTCTTTTGGCTACAGATGACCTTGGGG
TTGTCCTCCTGGCGGGCTCAACAGTGGGTGGAGGGTCCTGTGTGAATTGGTCTGCTTCAATTCGCACCCCTGAACATGTCTTAAGAGAGTGGAGTGATAACCTGAAATTGACCCAATTTGCCACCAGGCAATACACAGAAGCCATGGATATCGTCTGCAGAAGAATGGGAGTGCAGGAAGAAATCTGCAGTGAGGGTTTC
ATGAACAAGGTTCTCAGAAAAGGTTGCCAGGAATTAGGGTATCCTGTCAATAACATACCGCGAAATGCAGGTTCTGATCATTTCTGTGGGTGGTGTTGCTTTGGATGCAAAGATGGTAAGAAACAAGGCACACATGAGACATGGCTAGTGGATGCAGTCTCTTCAAATGCTGTAATTCTTTCAGGATGCAAAGCCATAGG
GGTACTACAAGAGAAAAGTAATGACAGGAAAAGGAAAAAAAGAGCAGTGGGGGTTGTTTTCCAGACAGGGAATGGTTCTCAGAATATTTTTGTGGAGTCTAAAGTAACTGTTGTTGCATGTGGGGCACTCTGGAGCCCTGGTTTGTTAAGGAAAAGTGGACTCAAGAACCCTAATATTGGGAAAAATCTTCATCTTCATC
CTGTTCGGATGGCTTGGGGGTATTTTCCTGAATCAGAATGGCCACAGGGAAAGAGCTACGAGGGAGGAATAATGACTTCAATGTCTCCTATTTTTGACCCCTCTGGTTATGGAACCCTAATTCAAACGCCTTCATTGCATCCTGGCCTGTTTTCTGTGCTGATGCCATGGACTTCCGCTTTAGATATGAAGGAGAGAATG
TCCAGATTTGCTAGAACAGCTCATATATTTTCCTTGGCCAGGGATAAGGGCACAGGAACGGTGAACCTCCCTGGGCATCTCACTTACAGTTTGGATCCACATGACGAAAATAATCTTAAGAAAGGCATAGAGAAGGTGTTGAGAATAATGATTGCAGCTGGAGCAGAGGAAGTTGGTACTCACCATTGCTCTGGCGAGCG
TTTGAAGCCCAAAATATCCAATTCCGATGAGGTTGAGAATTTTATCAAGCGCGCAAGCTCCAAGAGCTTGAGAGGTTTATCAACTCCTTTGTGTTCTGCACACCAGATGGGTAGCTGTAGAATGGGCGTTGATAAGGGCCATTCGGTGGTTGATCCCAGAGGTGAGACCTGGGAAGTAGAGGGATTGTTTGTGGCTGATG
CTAGTGTCTTGCCTACAGCTCTTGGTGTCAATCCCATGGTCACTGTACAGGCTGTAGCTTATTGCATTGCAAAATTCGTTTTGGAATCGCTCACGACCAGAGAAGACGATTAGTTTACTCTTGTGTTCGTTTTAAAGAAAAGAGAATTGTTTTTAACAGTACTCATGTAAAGTGCGAAAAATATTGAACTTTGAAATTAA
ATTTTAAGTTAATTTTAC
>TRINITY_DN42307_c0_g1_i5 from sample A9 / Example unspliced isoform:CAGGTCCCTGGAACTTTAAACGCCATTTTATTCCACTCCAGCTCAATTACAGTGGATTCTGATGGAATCCAGCGGGAAAACTCAGAGGCAAGATTCAGAAGATGTAGCAATCGATTTAAGTCAATCATCCAACGATGTTCATGAACTTCTCAGAGGTGGCAGACCCAATTACCAGAACAATATATTTTCAAAATCTCAGA
TGGAAGCTTTGACTAGTCTCTGTGATACTCTGGTGCCTTCGCTGGATTTCGATGGAATGTCAAGCAGTAATAATGCGCAGGATAATGATGAACTTCGATCGTTTTATGGAGTTTCGGCATCTTCTGCTGGAATCCCTGACCATCTTGCAGGATATATATCCGAACGCTTAATGCATGCAGCTGTGGGTCTGATGAAGTTT
TCTTTGTGGCTTCTATCTACATGGTATGGGACATTTATCATGTGTGGCAGATTGTCTCTGTGCAGTCATTTCCCTTTTTTTCAGAGATTTCCTCTGATTTTACAGCACCGGCGGGAGGAAATCATGCTTTCATGGTCACACAGCTCCTGGTATATCTATCGTCTTCTGTTCAAGGGCATCAAATTCTTGTGCTGCCTTTC
ATTCTACACAAAGGTGGATGGGAAGAATGAGAATCCTTCATGGAGAGCTATTGGTTACTGTGGACCAGATCCAGAGgttactaaaaacatgaaaaatactcctcaatattctgatggtgctgatagtcctctccatgataaggtaattgatttagatcttgcagGTGACAAGATAATCAATACACTGCGTAACGCCGGCT
GTAACGTTATAGAAGAGAGCTCTCAGCTTGAACATTTATGGAAGCAGAAGATGGGAAGTAAAAGTGATGGCAGAAAGAAGGCAATCACAATAAAATGTGACATAGTTGTAGTAGGGTCAGGCACTGGAGGAGGAGTAGTTGCAGGGGTCCTTGCAAAGGCTGGCTACAAAGTTTTAGTTCTTGAAAAAGGGAAGTACTTT
GCCAGGAATAAACTGTCCCTACTGGAAGGTCCATCGTTGGATCAGATGTATGAGGGAGGAGGTCTTTTGGCTACAGATGACCTTGGGGTTGTCCTCCTGGCGGGCTCAACAGTGGGTGGAGGGTCCTGTGTGAATTGGTCTGCTTCAATTCGCACCCCTGAACATGTCTTAAGAGAGTGGAGTGATAACCTGAAATTGAC
CCAATTTGCCACCAGGCAATACACAGAAGCCATGGATATCGTCTGCAGAAGAATGGGAGTGCAGGAAGAAATCTGCAGTGAGGGTTTCATGAACAAGGTTCTCAGAAAAGGTTGCCAGGAATTAGGGTATCCTGTCAATAACATACCGCGAAATGCAGGTTCTGATCATTTCTGTGGGTGGTGTTGCTTTGGATGCAAAG
ATGGTAAGAAACAAGGCACACATGAGACATGGCTAGTGGATGCAGTCTCTTCAAATGCTGTAATTCTTTCAGGATGCAAAGCCATAGGGGTACTACAAGAGAAAAGTAATGACAGGAAAAGGAAAAAAAGAGCAGTGGGGGTTGTTTTCCAGACAGGGAATGGTTCTCAGAATATTTTTGTGGAGTCTAAAGTAACTGTT
GTTGCATGTGGGGCACTCTGGAGCCCTGGTTTGTTAAGGAAAAGTGGACTCAAGAACCCTAATATTGGGAAAAATCTTCATCTTCATCCTGTTCGGATGGCTTGGGGGTATTTTCCTGAATCAGAATGGCCACAGGGAAAGAGCTACGAGGGAGGAATAATGACTTCAATGTCTCCTATTTTTGACCCCTCTGGTTATGG
AACCCTAATTCAAACGCCTTCATTGCATCCTGGCCTGTTTTCTGTGCTGATGCCATGGACTTCCGCTTTAGATATGAAGGAGAGAATGTCCAGATTTGCTAGAACAGCTCATATATTTTCCTTGGCCAGGGATAAGGGCACAGGAACGGTGAACCTCCCTGGGCATCTCACTTACAGTTTGGATCCACATGACGAAAATA
ATCTTAAGAAAGGCATAGAGAAGGTGTTGAGAATAATGATTGCAGCTGGAGCAGAGGAAGTTGGTACTCACCATTGCTCTGGCGAGCGTTTGAAGCCCAAAATATCCAATTCCGATGAGGTTGAGAATTTTATCAAGCGCGCAAGCTCCAAGAGCTTGAGAGGTTTATCAACTCCTTTGTGTTCTGCACACCAGATGGGT
AGCTGTAGAATGGGCGTTGATAAGGGCCATTCGGTGGTTGATCCCAGAGGTGAGACCTGGGAAGTAGAGGGATTGTTTGTGGCTGATGCTAGTGTCTTGCCTACAGCTCTTGGTGTCAATCCCATGGTCACTGTACAGGCTGTAGCTTATTGCATTGCAAAATTCGTTTTGGAATCGCTCACGACCAGAGAAGACGATTA
GTTTACTCTTGTGTTCGTTTTAAAGAAAAGAGAATTGTTTTTAACAGTACTCATGTAAAGTGCGAAAAATATTGAACTTTGAAATTAAATTTTAAGTTAATTTTAC
Intron 2 GTCAGGAAAA ... CCTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 2 | 1 | 3 |
| A2 | 23.81 | 8 | 0 | 5 |
| A3 | 23.08 | 10 | 4 | 2 |
| A4 | 17.24 | 12 | 4 | 1 |
| A5 | 33.33 | 5 | 4 | 1 |
| A6 | 33.33 | 2 | 2 | 0 |
| A7 | 0 | 3 | 0 | 0 |
| A8 | 33.33 | 1 | 1 | 0 |
| A9 | 12 | 11 | 1 | 2 |
| A10 | 25 | 3 | 0 | 2 |
>TRINITY_DN41785_c0_g1_i2 from sample A6 / Example spliced isoformTGGCAGATTGTCTCTGTGCAGTCATTTCCCTTTTTTTCAGAGATTTCCTCTGATTTTACAGCACCGGCGGGAGGAAATCATGCTTTCATGGTCACACAGCTCCTGGTATATCTATCGTCTTCTGTTCAAGGGCATCAAATTCTTGTGCTGCCTTTCATTCTACACAAAGGTGGATGGGAAGAATGAGAATCCTTCATGGA
GAGCTATTGGTTACTGTGGACCAGATCCAGAGGTTACTAAAAACATGAAAAATACTCCTCAATATTCTGATGGTGCTGATAGTCCTCTCCATGATAAGGTAATTGATTTAGATCTTGCAGGTGACAAGATAATCAATACACTGCGTAACGCCGGCTGTAACGTTATAGAAGAGAGCTCTCAGCTTGAACATTTATGGAAG
CAGAAGATGGGAAGTAAAAGTGATGGCAGAAAGAAGGCAATCACAATAAAATGTGACATAGTTGTAGTAGGGTCAGGCACTGGAGGGGGAGTAGTTGCAGGGGTCCTTGCAAAGGCTGGCTACAAAGTTTTAGTTCTTGAAAAAGGAAAGTACTTTGCCAGGAATAAACTGTCCCTACTGGAAGGTCCATCGTTGGATCA
GATGTATGAGGGAGGAGGTCTTTTGGCTACAGATGACCTTGGGGTTGTCCTCCTGGCGGGCTCAACAGTGGGTGGAGGGTCCTGTGTGAATTGGTCTGCTTCAATTCGCACCCCTGAACATGTCTTAAGAGAGTGGAGTGATAACCTGAAATTGACCCAATTTGCCACCAGGCAATACACAGAAGCCATGGATATCGTCT
GCAGAAGAATGGGAGTGCAGGAAGAAATCTGCAGTGAGGGTTTCATGAACAAGGTTCTCAGAAAAGGTTGCCAGGAATTAGGGTATCCTGTCAATAACATACCGCGAAATGCAGGTTCTGATCATTTCTGTGGGTGGTGTTGCTTTGGATGCAAAGATGGTAAGAAACAAGGCACACATGAGACATGGCTAGTGGATGCA
GTCTCTTCAAATGCTGTAATTCTTTCAGGATGCAAAGCCATAGGGGTACTACAAGAGAAAAGTAATGACAGGAAAAGGAAAAAAAGAGCAGTGGGGGTTGTTTTCCAGACAGGGAATGGTTCTCAGAATATTTTTGTGGAGTCTAAAGTAACTGTTGTTGCATGTGGGGCACTCTGGAGCCCTGGTTTGTTAAGGAAAAG
TGGACTCAAGAACCCTAATATTGGGAAAAATCTTCATCTTCATCCTGTTCGGATGGCTTGGGGGTATTTTCCTGAATCAGAATGGCCACAGGGAAAGAGCTACGAGGGAGGAATAATGACTTCAATGTCTCCTATTTTTGACCCCTCTGGTTATGGAACCATAATTCAAACGCCTTCATTGCATCCTGGCCTGTTTTCTG
TGCTGATGCCATGGACTTCCGCTTTAGATATGAAGGAGAGAATGTCCAGATTTGCTAGAACAGCTCATATATTTTCCTTGGCCAGGGATAAGGGCACAGGAACGGTGAACCTCCCTGGGCATCTCACTTACAGTTTGGATCCACATGACGAAAATAATCTTAAGAAAGGCATAGAGAAGGTGTTGAGAATAATGATTGCA
GCTGGAGCAGAGGAAGTTGGTACTCACCATTGCTCTGGCGAGCGTTTGAAGCCCAAAATATCCAATTCCGATGAGGTTGAGAATTTTATCAAGCGCGCAAGCTCCAAGAGCTTGAGAGATTTATCAACTCCTTTGTGTTCTGCACACCAGATGGGTAGTTGTAGAATGGGCGTTGATAAGGGCCATTCGGTGGTTGATCC
CAGAGGTGAGACCTGGGAAGTAGAGGGATTGTTTGTGGCTGATGCTAGTGTCTTGCCTACAGCTCTTGGTGTCAATCCCATGATCACTGTACAGGCTGTAGCTTATTGCATTGCAAAATTCGTTTTGGAATCGCTCACGACCAGAGAAGACGATTAGTTTACTCTTGTGTTCGTTTTAAAGAAAAGAGAATTGTTTTTAA
CAGTACTCATGTAAAGTGCGAAAAATATTGAACTTTGAAATTAAATTTTAAGTTAATTTTACGATTAAAAATGAA
>TRINITY_DN41785_c0_g1_i3 from sample A6 / Example unspliced isoform:TGGCAGATTGTCTCTGTGCAGTCATTTCCCTTTTTTTCAGAGATTTCCTCTGATTTTACAGCACCGGCGGGAGGAAATCATGCTTTCATGGTCACACAGCTCCTGGTATATCTATCGTCTTCTGTTCAAGGGCATCAAATTCTTGTGCTGCCTTTCATTCTACACAAAGGTGGATGGGAAGAATGAGAATCCTTCATGGA
GAGCTATTGGTTACTGTGGACCAGATCCAGAGGTTACTAAAAACATGAAAAATACTCCTCAATATTCTGATGGTGCTGATAGTCCTCTCCATGATAAGGTAATTGATTTAGATCTTGCAGGTGACAAGATAATCAATACACTGCGTAACGCCGGCTGTAACGTTATAGAAGAGAGCTCTCAGCTTGAACATTTATGGAAG
CAGAAGATGGGAAGTAAAAGTGATGGCAGAAAGAAGGCAATCACAATAAAATGTGACATAGTTGTAGTAGGGTCAGgtcaggaaaaattttaacaattcatatttatcttttgatttggatatatgcataaattccacaaaattccaaggattttatctattcttttgaacatctcgactctatttaacataaataacta
tctttaaagatgaggaaatcgtgaaattaagctcatcaaatttttcctttttcagGCACTGGAGGGGGAGTAGTTGCAGGGGTCCTTGCAAAGGCTGGCTACAAAGTTTTAGTTCTTGAAAAAGGAAAGTACTTTGCCAGGAATAAACTGTCCCTACTGGAAGGTCCATCGTTGGATCAGATGTATGAGGGAGGAGGTCT
TTTGGCTACAGATGACCTTGGGGTTGTCCTCCTGGCGGGCTCAACAGTGGGTGGAGGGTCCTGTGTGAATTGGTCTGCTTCAATTCGCACCCCTGAACATGTCTTAAGAGAGTGGAGTGATAACCTGAAATTGACCCAATTTGCCACCAGGCAATACACAGAAGCCATGGATATCGTCTGCAGAAGAATGGGAGTGCAGG
AAGAAATCTGCAGTGAGGGTTTCATGAACAAGGTTCTCAGAAAAGGTTGCCAGGAATTAGGGTATCCTGTCAATAACATACCGCGAAATGCAGGTTCTGATCATTTCTGTGGGTGGTGTTGCTTTGGATGCAAAGATGGTAAGAAACAAGGCACACATGAGACATGGCTAGTGGATGCAGTCTCTTCAAATGCTGTAATT
CTTTCAGGATGCAAAGCCATAGGGGTACTACAAGAGAAAAGTAATGACAGGAAAAGGAAAAAAAGAGCAGTGGGGGTTGTTTTCCAGACAGGGAATGGTTCTCAGAATATTTTTGTGGAGTCTAAAGTAACTGTTGTTGCATGTGGGGCACTCTGGAGCCCTGGTTTGTTAAGGAAAAGTGGACTCAAGAACCCTAATAT
TGGGAAAAATCTTCATCTTCATCCTGTTCGGATGGCTTGGGGGTATTTTCCTGAATCAGAATGGCCACAGGGAAAGAGCTACGAGGGAGGAATAATGACTTCAATGTCTCCTATTTTTGACCCCTCTGGTTATGGAACCATAATTCAAACGCCTTCATTGCATCCTGGCCTGTTTTCTGTGCTGATGCCATGGACTTCCG
CTTTAGATATGAAGGAGAGAATGTCCAGATTTGCTAGAACAGCTCATATATTTTCCTTGGCCAGGGATAAGGGCACAGGAACGGTGAACCTCCCTGGGCATCTCACTTACAGTTTGGATCCACATGACGAAAATAATCTTAAGAAAGGCATAGAGAAGGTGTTGAGAATAATGATTGCAGCTGGAGCAGAGGAAGTTGGT
ACTCACCATTGCTCTGGCGAGCGTTTGAAGCCCAAAATATCCAATTCCGATGAGGTTGAGAATTTTATCAAGCGCGCAAGCTCCAAGAGCTTGAGAGATTTATCAACTCCTTTGTGTTCTGCACACCAGATGGGTAGTTGTAGAATGGGCGTTGATAAGGGCCATTCGGTGGTTGATCCCAGAGGTGAGACCTGGGAAGT
AGAGGGATTGTTTGTGGCTGATGCTAGTGTCTTGCCTACAGCTCTTGGTGTCAATCCCATGATCACTGTACAGGCTGTAGCTTATTGCATTGCAAAATTCGTTTTGGAATCGCTCACGACCAGAGAAGACGATTAGTTTACTCTTGTGTTCGTTTTAAAGAAAAGAGAATTGTTTTTAACAGTACTCATGTAAAGTGCGA
AAAATATTGAACTTTGAAATTAAATTTTAAGTTAATTTTACGATTAAAAATGAA