NA ----> NA

Intron 1 GTAATTCTCT ... CATCCACAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	94.29	2	2	33
A2	94.44	1	1	17
A3	87.1	4	0	27
A4	95.45	1	0	21
A5	100	0	1	18
A6	91.3	6	0	63
A7	92.31	6	2	72
A8	100	0	3	60
A9	93.1	6	10	81
A10	88.89	8	9	64

>TRINITY_DN44872_c1_g2_i1 from sample A9 / Example spliced isoform

GTTGGAGACCATGTGGAGTCGTCCTTCTCTAAAATACCACACTACCCAACCTCACATTGACCACGGTTATGAATCAAATCGCTGAGGTAAAAAGAAATGGCTATCGAGAACTTTGTAGAAGGTCCTCGTTACTTCGTCACCACTATTGATCGATAATGGCATTGGATGAGAATCGATGCGTGACAGACCAGAGGCCTCGA
TATGACTGCCTTCTGTTTGATCTGGATGACACATTATATCC

>TRINITY_DN44872_c1_g2_i3 from sample A9 / Example unspliced isoform:

GTTGGAGACCATGTGGAGTCGTCCTTCTCTAAAATACCACACTACCCAACCTCACATTGACCACGGTTATGAATCAAATCGCTGAGGTAAAAAGAAATGGCTATCGAGAACTTTGTAGAAGGTCCTCGTTACTTCGTCACCACTgtaattctctctttgcggatttcccattgctggcatattccgtttcaacgtctaga
tatacattttaaacaaaaatggaaaacaatttaaccaaaacacaaacgtaatccacacgaggaaacgttttaaacgtgttggaggtcatccacaagATTGATCGATAATGGCATTGGATGAGAATCGATGCGTGACAGACCAGAGGCCTCGATATGACTGCCTTCTGTTTGATCTGGATGACACATTATATCCCTTAAGT
TCTGGACTTGCTGCAGCATGCACCAAGAACATCGGAGATTATGTGAATGAAAAGCTTGGAGTTGAAAAGAGCAGAATCCCAGGCTTGAGCAGAGAGCTGTATTTGACTTATGGGACAACCATGGCCGGGCTCAGGGCAACGGGCTATGAATTTGACTATGATGATTACCACAGTTTTGTTCACGGAAGATTGCCATATGA
GAATCTTAAACCAGATCCTATTTTGAAGAACTTGTTATTAAGCATGCCTCAGAGGAAAATTATATTTACAAACAGTGACAAAGTTCATGCTGCAAAGGTCCTTAAGAAGCTGGGGTTGGAAGATTGCTTTGAAGGCATAATATGCTTTGAGACACTTAATCCTCCTTCAAAAATTACTGAAAACAATAATGAAGGGAATA
TGCCCACTGTTAACTCTACAATCACGAAGACACCCATAATTTGCAAGCCCTCAAAAGAGGCCATGGAGCAGGCTCTTCGCATTGCAAATGCTGATCCACAAAGAACGATTTTTTTTGATGACAGTACCCGGAATATAGCCGGAGGAAAGCGTGC

Intron 2 GTATTCTTTA ... TGTATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	26	37	8	13
A2	25	48	13.5	16
A3	23.15	83	16.5	25
A4	36.67	38	9.5	22
A5	50	18	7.5	18
A6	20.83	133	25.5	35
A7	22.79	166	25	49
A8	25.69	107	19.5	37
A9	19.76	203	43	50
A10	21.21	156	24.5	42

>TRINITY_DN46280_c1_g5_i2 from sample A8 / Example spliced isoform

GGAAAGAATCCTCAAGAAATCACTTCTGACAACAAATGAATTTTAAATGACGGGTTCAAGTTCAACCATGACGCCTGCGCCTACATTACGGAAGATTCTCAGCAATTCATCTGAGTCGTTCGAAGATCTATTTAAGCCACACAATGTTCTCGTTCAATCCCCCCCTCCATTCCATCTCAAGCTCGTTAGCTTGCAATTGC
CCTTCTGTCTTGCATATATTCTCAGAATCCCCATTTGTTTCGATCTACATTGTCTCCCTCTTTGTTGCGTTCAGCCAGATAACTCCTTCCCAGATTCAACATATTTGATTGATCGATAATGGCATTGGATGAGAATCGATGCGTGACAGACCAGAGGCCTCGATATGACTGCCTTCTGTTTGATCTGGATGACACATTAT
ATCCCTTAAGTTCTGGACTTGCTGCAGCATGCACCAAGAACATCGGAGATTATGTGAATGAAAAGCTTGGAGTTGAAAAGAGCAGAATCCCAGGCTTGAGCAGAGAGCTGTATTTGACTTATGGGACAACCATGGCCGGGCTCAGGGCAACGGGCTATGAATTTGACTATGATGATTACCACAGTTTTGTTCACGGAAGA
TTGCCATATGAGAATCTTAAACCAGATCCTATTTTGAAGAACTTGTTATTAAGCATGCCTCAGAGGAAAATTATATTTACAAACAGTGACAAAGTTCATGCTGCAAAGGTCCTTAAGAAGCTGGGGTTGGAAGATTGCTTTGAAGGCATAATATGCTTTGAGACACTTAATCCTCCTTCAAAAATTACTGAAAACAATAA
TGAAGGGAATATGCCCACTGTTAACTCTACA

>TRINITY_DN46280_c1_g5_i1 from sample A8 / Example unspliced isoform:

TCAACATATTTGgtattctttacgggcaatcttcttagacagttctgaatttaatggggtttcaaaacagaaggactctttcttatgatattcttgttttgatgcctttgttatgcatatacttcagtgaatcggaatgagaatttgtgggtatgtgtattgcagATTGATCGATAATGGCATTGGATGAGAATCGATGC
GTGACAGACCAGAGGCCTCGATATGACTGCCTTCTGTTTGATCTGGATGACACATTATATCCCTTAAGTTCTGGACTTGCTGCAGCATGCACCAAGAACATCGGAGATTATGTGAATGAAAAGCTTGGAGTTGAAAAGAGCAGAATCCCAGGCTTGAGCAGAGAGCTGTATTTGACTTATGGGACAACCATGGCCGGGCT
CAGGGCAACGGGCTATGAATTTGACTATGATGATTACCACAGTTTTGTTCACGGAAGATTGCCATATGAGAATCTTAAACCAGATCCTATTTTGAAGAACTTGTTATTAAGCATGCCTCAGAGGAAAATTATATTTACAAACAGTGACAAAGTTCATGCTGCAAAGGTCCTTAAGAAGCTGGGGTTGGAAGATTGCTTTG
AAGGCATAATATGCTTTGAGACACTTAATCCTCCTTCAAAAATTACTGAAAACAATAATGAAGGGAATATGCCCACTGTTAACTCTACA