sp|Q9XF92|BRH1_ARATH ----> Brassinosteroid-responsive RING protein 1
Intron 1 GTGAGATGTC ... TAATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.94 | 11.4 | 13 | 18 |
| A2 | 68.75 | 5 | 13 | 9 |
| A3 | 67.19 | 9.8 | 25 | 15 |
| A4 | 79.28 | 1.6 | 5 | 7 |
| A5 | 76.47 | 2 | 5 | 8 |
| A6 | 18.53 | 66 | 9 | 21 |
| A7 | 18.58 | 52 | 4 | 19 |
| A8 | 13.93 | 105.4 | 3 | 31 |
| A9 | 11.82 | 67.4 | 6 | 12 |
| A10 | 20.1 | 65.8 | 21 | 12 |
>TRINITY_DN48892_c1_g1_i11 from sample A7 / Example spliced isoformTTCAACATATGGGTGAGGAAGGGACATCTGTCCCTGGTGTGGTACATACACCAGCTCGTCACCATGCAAGACCATCAACTAGTGCAGGACCATCAGGACCATCCACTAGTGGAGGACCATCAGCTATTCCCCATCCTAGTACTGATCCTCACGAGTGCACATCATGTGGTCGTCCCTGCTATGGTCTTGCCTCAGATGTT
GCCTTCAGTGGGTTTTTGAGAGAGTTCAACATATGGGTGAGGAAGGGACATCTGTCCCTGGTGTGGTACATACACCAGCTCGTCACCATGCAGGACCATCAGCTAGTATGTTGATGGTTAATTGTAATAAATTCTTCATTTATTTTCGTCGCTGCAGGACCATCAGGACCATCCTTGTACACATATATATAGTTTGAGCT
AATATATTAATTTTGTGAACTTGCAGTTGATGCTTTATGCCGGCAGAAATACTTCTGCAGGACCATCAGGACCATCCGCCCCAGAGACTAGTGGAGGACCATCAGCTATTCCCCATCCTAGTACTGATCCTCACGAGTGCACGTCATGTGGTCGTCCCTGCTATGGTATTGCATCAGATGTTGCCTTCAGTGGCTTTTTG
AGAGAGCCGTATCTTGATGGTTAATTGTAATAAATTCTTCATTTATTTTCGTCTTTGTACACATATATATAGTTTGAGCTAATATATTAATTTTGTGAACTTGCAGGGATGTTCTTGATGATGATTACCGGCAGTGACGCCCTAGAGCCGGATGTTCCAGACCAGACTCTTCGGCAGGCCCATCTTATATACCACCTATT
GCCGTATCTCACACCGAGATGGCAGATCCTTCACAGGGGCAAGGTAATGTGGAGGTAGTGCCCATGGTCATACCGTCCCCTGAAACGTCTGGGCTCCAGGCACCATCCGACACATCTGGCCCATTGCCTGTATTTGCATCTCCCTCCAGGCCATTCGTGAACAAGGGTCGTGTGTATGTGAGGCGTTCTACTCCGAGGAA
GACTCCAGCTGCCCACGACCATGGGCTTACTCACACCACGGAACCTGAGTTGTCTGCTGAGAACCTTGCATCGATGGTTGATGCAGCAGTTAGTGCCGCATCTGCAGTGGCGACTGATCACACACAGGTATGTAACTATTTCAACATTATCTTTACATAGTTTATTATTGTTGGACCTATTGTTTATTCATGCATTTCTA
ACTATTTCAACATTTTTTCATTGTAGCCACCACTAGCAGGAGCAGTGCCTGGCCCCCCTGGTTCAACCATCCTGGATGTTCAACCGACGGCTCCATCTGCTACACAAGCAACACAATCTCCTTTGTCAGTTGAGGATCCAGGGATGCACATTGATCCTAGGGATGTGCCTAGAGGATCAACGTCGGGAAAGAACAAGAGA
AAGCTTGAGTTTTGATAGTTTTGGATAGTTTTGGACACATGTGCTTTTGGATACTTTTGTATATATATGTACTTTTCGATAC
>TRINITY_DN48892_c1_g1_i22 from sample A7 / Example unspliced isoform:GTATGTAACTATTTCAACATTATCTTTACATAGTTTATTATTGTTGGACCTATTGTTTATTCATGCATTTCTAACTATTTCAACATTTTTTCATTGTAGCCACCACTAGCAGGAGCAGTGCCTGGCCCCCCTGGTTCAACCATCCTGGATGTTCAACCGACGGCTCCATCTGCTACACAAGCAACACAATCTCCTTTGTC
AGTTGAGgtgagatgtccttcagtgaccaagtgtttcatgcactttccatgcaccagttgataattgttgagataatgtattagtgtacatagttagttgaatttaacaattgatatttaatttgcagGATCCAGGGATGCACATTGATCCTAGGGATGTGCCTAGAGGATCAACGTCGGGAAAGAACAAGAGAAAGCTT
GAGTTTTGATAGTTTTGGATAGTTTTGGACACATGTGCTTTTGGATACTTTTGTATATATATGTACTTTTCGATAC
Intron 2 GTATGTAACT ... TTCATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44.05 | 20 | 15.5 | 16 |
| A2 | 71.78 | 5 | 16.5 | 9 |
| A3 | 81.26 | 6 | 33.5 | 19 |
| A4 | 60 | 2 | 2 | 4 |
| A5 | 71.71 | 3 | 8.5 | 7 |
| A6 | 15.91 | 50 | 3 | 16 |
| A7 | 10.91 | 78 | 10.5 | 9 |
| A8 | 15.9 | 95 | 12.5 | 24 |
| A9 | 9.8 | 78 | 4 | 13 |
| A10 | 16.17 | 75 | 8 | 21 |
>TRINITY_DN48892_c1_g1_i18 from sample A7 / Example spliced isoformTTCAACATATGGGTGAGGAAGGGACATCTGTCCCTGGTGTGGTACATACACCAGCTCGTCACCATGCAAGACCATCAACTAGTGCAGGACCATCAGGACCATCCACTAGTGGAGGACCATCAGCTATTCCCCATCCTAGTACTGATCCTCACGAGTGCACATCATGTGGTCGTCCCTGCTATGGTCTTGCCTCAGATGTT
GCCTTCAGTGGGTTTTTGAGAGAGTTCAACATATGGGTGAGGAAGGGACATCTGTCCCTGGTGTGGTACATACACCAGCTCGTCACCATGCAGGACCATCAGCTACTGCAGGACCATCAGGACCATCCACTTCTGCAGGACCATCAGGACCATCCACTAGTGGAGGACCATCAGCTATTCCCCATCCTAGTACTGATCCT
CACGAGTGCACGTCATGTGGTCGTCCCTGCTATGGTATTGCATCAGATGTTGCCTTCAGTGGCTTTTTGAGAGAGTTGATGATGATTACCGGCAGTGACGCCCTAGAGCCGGATGTTCCAGACTCGGCAGGCCCATCTTATATACCACCTATTGCCGTATCTCACACCGAGATGGCAGATCCTTCACAGGGGCAAGGTAA
TGTGGAGGTAGTGCCCATGGTCATACCGTCCCCTGAAACGTCTGGGCTCCAGGCACCATCCGACACATCTGGCCCATTGCCTGTATTTGCATCTCCCTCCAGGCCATTCGTGAACAAGGGTCGTGTGTATGTGAGGCGTTCTACTCCGAGGAAGACTCCAGCTGCCCACGACCATGGGCTTACTCACACCACGGAACCTG
AGTTGTCTGCTGAGAACCTTGCATCGATGGTTGATGCAGCAGTTAGTGCCGCATCTGCAGTGGCGACTGATCACACACAGCCACCACTAGCAGGAGCAGTGCCTGGCCCCCCTGGTTCAACCATCCTGGATGTTCAACCGACGGCTCCATCTGCTACACAAGCAACACAATCTCCTTTGTCAGTTGAGGATCCAGGGATG
CACATTGATCCTAGGGATGTGCCTAGAGGATCAACGTCGGGAAAGAACAAGAGAAAGCTTGAGTTTTGATAGTTTTGGATAGTTTTGGACACATGTGCTTTTGGATACTTTTGTATATATATGTACTTTTCGATAC
>TRINITY_DN48892_c1_g1_i11 from sample A7 / Example unspliced isoform:TTCAACATATGGGTGAGGAAGGGACATCTGTCCCTGGTGTGGTACATACACCAGCTCGTCACCATGCAAGACCATCAACTAGTGCAGGACCATCAGGACCATCCACTAGTGGAGGACCATCAGCTATTCCCCATCCTAGTACTGATCCTCACGAGTGCACATCATGTGGTCGTCCCTGCTATGGTCTTGCCTCAGATGTT
GCCTTCAGTGGGTTTTTGAGAGAGTTCAACATATGGGTGAGGAAGGGACATCTGTCCCTGGTGTGGTACATACACCAGCTCGTCACCATGCAGGACCATCAGCTAGTATGTTGATGGTTAATTGTAATAAATTCTTCATTTATTTTCGTCGCTGCAGGACCATCAGGACCATCCTTGTACACATATATATAGTTTGAGCT
AATATATTAATTTTGTGAACTTGCAGTTGATGCTTTATGCCGGCAGAAATACTTCTGCAGGACCATCAGGACCATCCGCCCCAGAGACTAGTGGAGGACCATCAGCTATTCCCCATCCTAGTACTGATCCTCACGAGTGCACGTCATGTGGTCGTCCCTGCTATGGTATTGCATCAGATGTTGCCTTCAGTGGCTTTTTG
AGAGAGCCGTATCTTGATGGTTAATTGTAATAAATTCTTCATTTATTTTCGTCTTTGTACACATATATATAGTTTGAGCTAATATATTAATTTTGTGAACTTGCAGGGATGTTCTTGATGATGATTACCGGCAGTGACGCCCTAGAGCCGGATGTTCCAGACCAGACTCTTCGGCAGGCCCATCTTATATACCACCTATT
GCCGTATCTCACACCGAGATGGCAGATCCTTCACAGGGGCAAGGTAATGTGGAGGTAGTGCCCATGGTCATACCGTCCCCTGAAACGTCTGGGCTCCAGGCACCATCCGACACATCTGGCCCATTGCCTGTATTTGCATCTCCCTCCAGGCCATTCGTGAACAAGGGTCGTGTGTATGTGAGGCGTTCTACTCCGAGGAA
GACTCCAGCTGCCCACGACCATGGGCTTACTCACACCACGGAACCTGAGTTGTCTGCTGAGAACCTTGCATCGATGGTTGATGCAGCAGTTAGTGCCGCATCTGCAGTGGCGACTGATCACACACAGgtatgtaactatttcaacattatctttacatagtttattattgttggacctattgtttattcatgcatttcta
actatttcaacattttttcattgtagCCACCACTAGCAGGAGCAGTGCCTGGCCCCCCTGGTTCAACCATCCTGGATGTTCAACCGACGGCTCCATCTGCTACACAAGCAACACAATCTCCTTTGTCAGTTGAGGATCCAGGGATGCACATTGATCCTAGGGATGTGCCTAGAGGATCAACGTCGGGAAAGAACAAGAGA
AAGCTTGAGTTTTGATAGTTTTGGATAGTTTTGGACACATGTGCTTTTGGATACTTTTGTATATATATGTACTTTTCGATAC