NA ----> NA
Intron 1 GTTAATCAAA ... GTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 81.65 | 10 | 39 | 50 |
| A2 | 67.82 | 14 | 35 | 24 |
| A3 | 75.61 | 10 | 33 | 29 |
| A4 | 61.9 | 12 | 20 | 19 |
| A5 | 67.74 | 5 | 6 | 15 |
| A6 | 65.96 | 48 | 96 | 90 |
| A7 | 71.36 | 58 | 138 | 151 |
| A8 | 67.23 | 77 | 167 | 149 |
| A9 | 64.89 | 46 | 85 | 85 |
| A10 | 63.27 | 36 | 63 | 61 |
>TRINITY_DN40698_c0_g2_i5 from sample A9 / Example spliced isoformTCTGCAATTAATTATTATCTAGAAGGATGGTTAAGAAAAACTAACTTAAAGCTTGAATGTCAACATTGTTAAAGGAAATATCATTTAAGTTTGCTCCAAAATAATGACACAAAAGCCAGGTTATCTCAACTACTGTTGCATCATATCTTTACTGGGTTTTCATTCCAACAAGATGCAGAGAATCTACATGAGAATACCGC
GTCACCAAGTATGGAGAGTTCACCATAGATCATGGGTGCAGTTCGCCACACTGCAGGAAATACATAACAGAATTTGCCATCAGACAACACATCACCAGGTTGTTGAGAACCCTAAAGGAGTTAGAGCTACCTTCCGAGCTCAGTTATCTCTCAAGATTCGCGCCTGATGGATCGTCTGTGATAGAGATGCTATAAAGATG
AATAATTGCAAAGATTACGGTGACAATTACCTTGTTGAAAATGTAAAACGCCAAGGATTGAAGCAGTTTTACCTCAAGGATTGAAGCAGTTTTACCTCATCACATGGCGAAAGGATCTAAACTCAATTGGCGAAAGCGTTCAATATGCAATATGATAGCGCAAGATTTTACTAGCTTCTGCCAGGTCACAAAGTTACCAG
ATCGCCAGACTGCGAGGATTGCTGCTAGGATAAACGCATCAGCTTAACCAATTAACAAGAACGGAGAATTTTTTGTGCAGTTGGAGAGGATAAGGGTGATCGAACTGTTTCAGAAGGCGAGGGAAGTTCTAGTATTTTCTTGGATGGTCTATATAAGTAGTAGCAAGTCGACTTCTAGGAGGGAGGGGAGGAACGTTCCA
GGAAACTGGACAAACTTATTTTTCCTTTTG
>TRINITY_DN40698_c0_g2_i7 from sample A9 / Example unspliced isoform:TCTGCAATTAATTATTATCTAGAAGGATGGTTAAGAAAAACTAACTTAAAGCTTGAATGTCAACATTGTTAAAGGAAATATCATTTAAGTTTGCTCCAAAATAATGACACAAAAGCCAGGTTATCTCAACTACTGTTGCATCATATCTTTACTGGGTTTTCATTCCAACAAGATGCAGAGAATCTACATGAGAATACCGC
GTCACCAAGTATGGAGAGTTCACCATAGATCATGGGTGCAGTTCGCCACACTGCAGGAAATACATAACAGAATTTGCCATCAGACAACACATCACCAGGTTGTTGAGAACCCTAAAGGAGTTAGAGCTACCTTCCGAGCTCAGTTATCTCTCAAGATTCGCGCCTGATGGATCGTCTGTGATAGAGATGCTATAAAGATG
AATAATTGCAAAGATTACGGTGACAATTACCTTGTTGAAAATGTAAAACGCCAAGGATTGAAGCAGTTTTACCTCAAGGATTGAAGCAGTTTTACCTCATCACATGGCGAAAGGATCTAAACTCAgttaatcaaattggcagcaccgggttgtatacctccataacattgcactatgtcaagacagaatgatatcaattc
gagaggatatctctataattttctttaccttcgtgataatttttttttttctaaacaaaattctgtcattttgttttaaggtaatgaatacttttgtttttgcagATTGGCGAAAGCGTTCAATATGCAATATGATAGCGCAAGATTTTACTAGCTTCTGCCAGGTCACAAAGTTACCAGATCGCCAGACTGCGAGGATT
GCTGCTAGGATAAACGCATCAGCTTAACCAATTAACAAGAACGGAGAATTTTTTGTGCAGTTGGAGAGGATAAGGGTGATCGAACTGTTTCAGAAGGCGAGGGAAGTTCTAGTATTTTCTTGGATGGTCTATATAAGTAGTAGCAAGTCGACTTCTAGGAGGGAGGGGAGGAACGTTCCAGGAAACTGGACAAACTTATT
TTTCCTTTTGCTGTATGTTTCTCTGCTAGGGATGGTCTCCATAAACCAGAGAGATGACTGTGTTTCTCTTTCTGTTCTCTTGTTCTTATGCAAAACTGAATTTTTCTCAAGGAAACAGAGATGGAGGTGTTTCCTCAGGCTGATATATTAAAACTCTTTTGAAGCTATGGTGCTTTGAATGAACATTGGAACCTGTTCTC
ACAGCTTTGTAAAATTTCTTTTATGGAGTAATTGAAACAGATTACTTTTTCT