sp|Q6ZKL8|P2C66_ORYSJ ----> Probable protein phosphatase 2C 66
Intron 1 GTAAGCTCTT ... TTGGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 37.5 | 15 | 12 | 6 |
| A2 | 30 | 7 | 5 | 1 |
| A3 | 22.22 | 21 | 12 | 0 |
| A4 | 7.32 | 19 | 3 | 0 |
| A5 | 30.77 | 9 | 6 | 2 |
| A6 | 22.08 | 30 | 8 | 9 |
| A7 | 17.02 | 39 | 12 | 4 |
| A8 | 19.1 | 36 | 12 | 5 |
| A9 | 24.53 | 20 | 8 | 5 |
| A10 | 17.65 | 21 | 7 | 2 |
>TRINITY_DN34042_c0_g1_i1 from sample A6 / Example spliced isoformCGAAAGCTCCGGGCGCCCTCGGCCACCAGCTCTTCGTTACACAACAGTACCATGTGCCGTCGCTTCCGCGTCACCGAGTGTACTGCAAACAGAAGTGAGCAGCGGTGGGGCCTTCTAGAAGTCATTACGTTGTCAAATCAAATTAATACTAACACCGACAATGGCTCTCGGGTATTGCTGACCTCCCTTTAGAACCAGGG
TTTGAAAGAGTATATGCATTCTTCTGCAGTGCAAATACGTCGCGGGGAGTATTTTTATCTTCGACGCTTTGATTTTAGCAGCAGAGACGTTTATTCCGGTGAAAACCCTGTCGATGAAGCTCAGCGCGGAGGCATTCGATGATTCACTGAAATTCTGAGTGTTTAGCTCCCGACGTCGTATGTCTTCATGTCTGACATAT
CGGCTGTAGTCTGGTTCTCATTCTTCGAAAAGGACATGTTCTGTTTGAAATTCTATAAAAGTTTCTGAAAGTGTTCCTTTGAAGGTCTAGCTCGATTTCTCTACAAACTTTCCGGTTAGTGCGCAATCTCTTCGGTCGGTACTCGGCAGTCAGTACTTAGGTTGGATAAGATAAGCATTTAGCTTTATTGAGCCTTTCTT
GTCGGAGTCCCATTGGCACTGCGTTTGAGCTAAAAATAGTAGAAGGAAACATGAAGTTTAAAGCTTCTTTACTACCTAATGGACAAGTGTGAAGTAATGGAAAGATCGCAAGTCAGCGAAGCTATCCGAGTATAATGCATTGTTACCGTGAATCTTTTTCATGAAGAGAGAAATATGAAAATTACAAGGTTTTTGACCCT
TCAATGCTACCGTAAGATTGTAAAATGGTCATATTGCAACCTGTAAGCCTTCACAGACTTGCATAATGTTCCTCTTCTATTAATTTACGAAGCGATTAGCCTGAAATCTTTTACTATTCTTGACAGTTGAATCCTACTTTAAGATGTATGCATTCCACTAGCCGTGCAAAACGTGTTAAATGTACCGAGTTTATTCTGTT
TTCTGAAGCGAAATTCAAGTCTGGGGTTTGATTCAGCCATGCTGGAGGGGATTCGCCACAAAATCCTTGTACAGAGTTCATTCTCTGCCCTCTTTTAAGCATTTGATCACGGCAACATCCGAAATAGCTATATTTATATTTCTTTTGAGGTCTAGATCACAGTGGATTACTTGGGGAACAGTTCTCTGGCCCTCAGTATG
GGGTCCTGCTTGTCTACATGCGATGGAGTTGCTGATAACTTGCCCAGGAGACAACCTCTAGAAAAAGAGGCTTTAGAAGCTTTGGAAACAGAGGCAAAGATGGATGAGCAGCTGGCTTGTCTTCCCCGCAGAATGTGTGTAAATGGATCGAGTGATATTGCATCAATTTACTCGCAACAAGGGAAGAAGGGAGTCAACCA
GGATTGCATGGTTGTTTGGGAGGATTTTGGATCTCGTGAAGATATAGTCTTCTGTGGTGTTTTTGATGGCCACGGTCCATATGGACATTTGGTGTCAAGAAGAGTCAGAGACTCGTTACCTTCAACATTAATAGATCAATGGCACGAGCTTATTTCAGAGGAATCTAGCTTTTCCAAGGGGGACTTATCCGAGGATCCTG
ACAAAGACTGTGAAAGCAAATTAAAAGATGATTCGGGTTCTTGCAAGGATGAATCACAAATGTTTGCCGTATGGAAGGAGTCACATCTGAGAGCTTTTAAAGTTATGGATAAAGAGCTCAAATTGCATCCTACTTTGGATTGCTTTTGCAGTGGAACAACTGCTGTAACTGTCGTTAAGCAGGGCCAGGATCTTGCAATT
GCAAATGTTGGAGATTCTCGGGCAGTTTTGGGAACAATGTCTGCTGATAACAGGCTGATGGCCGTTCAGTTGACCGTTGATTTAAAGCCAAATCTACCTAAGGAGGAAGAACGGATAAGGCAGTGTGGAGGTCGAGTGTTTGCTTTAGAAGATGAGCCCGAGGTTCACAGAGTATGGTTACCTGATGATGACTCCCCAGG
TCTTGCTATGGCTCGAGCCTTCGGAGACTTCTGTCTGAAAGACTTCGGAGTCATTGCTGTTCCAGAAGTCACATACAGACGTCTTACAAATGGAGACCAATTTATTGTGCTTGCAACGGACGGGGTTTGGGATGTTCTGTCAAACCAAGAAGTTGTTAGCATCGTTTCTTCTGCACCTTCTAGGGTAACTGCAGCAAAAG
TGGTCGTTGAGACAGCTGTTCGTGCATGGAAGCGTAAATTCCCAACCTCGAGGGCCGATGACTGTGCTGCTGTATGCTTGTATGTCGACTCAAAATCTTTAGTCTCTCTTGCAAATGGCAACTCTGATCATTCACTAAAAGATGTAAATGCTAAAGAAATACAAGAGGTATGTGATGCCTCTAAGAACAATGCTGAAAGT
ATTGGTACAAGTACTAACAATACAGATTTACAAAAGCAAACTGAAAACCTATCCGAAGAAGAGAGGCATGATGGCAAAGATGCCCGTCGGAGCCTTGCTGAATGTATTGCTACAGACCAATGGTCGGCTCTAGATGGTCTGACCAGAGTGAATTCTCTTTTAAGCTTACCCAGATTTATGATGGGGTACAAGAAAGATGA
TGGATCAAAAAGGAGGCGACGGCGGCTCTGTTGAATTGAAGAATACTCCTGGTAAAATTGCATGCAACTTTCTTCAAATCTCATATTGAGAGATTGTACACTGTTGTTTTATTTGAAAACCTTCTTGTATTGTACGAAGGCCATGCACTGAAATTATAGGGAACTAAGAATAAAGCTTTTCTTACCGAAACCAACTTCCG
GTGAGGCCCAACTCTCTGTATCTACTGACTTGCTTTATTTATAGAAAAAATGCAATTACTCTTATACCG
>TRINITY_DN34042_c0_g1_i2 from sample A6 / Example unspliced isoform:CGAAAGCTCCGGGCGCCCTCGGCCACCAGCTCTTCGTTACACAACAGTACCATGTGCCGTCGCTTCCGCGTCACCGAGTGTACTGCAAACAGAAGTGAGCAGCGGTGGGGCCTTCTAGAAGTCATTACGTTGTCAAATCAAATTAATACTAACACCGACAATGGCTCTCGGGTATTGCTGACCTCCCTTTAGAACCAGGG
TTTGAAAGAGTATATGCATTCTTCTGCAGTGCAAATACGTCGCGGGGAGTATTTTTATCTTCGACGCTTTGATTTTAGCAGCAGAGACGTTTATTCCGGTGAAAACCCTGTCGATGAAGCTCAGCGCGGAGGCATTCGATGATTCACTGAAATTCTGAGTGTTTAGCTCCCGACGTCGTATGTCTTCATGTCTGACATAT
CGGCTGTAGTCTGGTTCTCATTCTTCGAAAAGGACATGTTCTGTTTGAAATTCTATAAAAGTTTCTGAAAGTGTTCCTTTGAAGGTCTAGCTCGATTTCTCTACAAACTTTCCGGTTAGTGCGCAATCTCTTCGGTCGGTACTCGGCAGTCAGTACTTAGGTTGGATAAGATAAGCATTTAGCTTTATTGAGCCTTTCTT
GTCGGAGTCCCATTGGCACTGCGTTTGAGCTAAAAATAGTAGAAGGAAACATGAAGTTTAAAGCTTCTTTACTACCTAATGGACAAGTGTGAAGTAATGGAAAGATCGCAAGTCAGCGAAGCTATCCGAGTATAATGCATTGTTACCGTGAATCTTTTTCATGAAGAGAGAAATATGAAAATTACAAGGTTTTTGACCCT
TCAATGCTACCGTAAGATTGTAAAATGGTCATATTGCAACCTGTAAGCCTTCACAGACTTGCATAATGTTCCTCTTCTATTAATTTACGAAGCGATTAGCCTGAAATCTTTTACTATTCTTGACAGTTGAATCCTACTTTAAGATGTATGCATTCCACTAGCCGTGCAAAACGTGTTAAATGTACCGAGTTTATTCTGTT
TTCTGAAGCGAAATTCAAGTCTGGGGTTTGATTCAGCCATGCTGGAGGGGATTCGCCACAAAATCCTTGTACAGAGTTCATTCTCTGCCCTCTTTTAAGCATTTGATCACGGCAACATCCGAAATAGCTATATTTATATTTCTTTTGAGGTCTAGATCACAGTGGATTACTTGGGGAACAGTTCTCTGGCCCTCAGTATG
GGGTCCTGCTTGTCTACATGCGATGGAGTTGCTGATAACTTGCCCAGGAGACAACCTCTAGAAAAAGAGGCTTTAGAAGCTTTGGAAACAGAGGCAAAGATGGATGAGCAGCTGGCTTGTCTTCCCCGCAGAATGTGTGTAAATGGATCGAGTGATATTGCATCAATTTACTCGCAACAAGGGAAGAAGGGAGTCAACCA
GGATTGCATGGTTGTTTGGGAGGATTTTGGATCTCGTGAAGATATAGTCTTCTGTGGTGTTTTTGATGGCCACGGTCCATATGGACATTTGGTGTCAAGAAGAGTCAGAGACTCGTTACCTTCAACATTAATAGATCAATGGCACGAGCTTATTTCAGAGGAATCTAGCTTTTCCAAGGGGGACTTATCCGAGGATCCTG
ACAAAGACTGTGAAAGCAAATTAAAAGATGATTCGGGTTCTTGCAAGGATGAATCACAAATGTTTGCCGTATGGAAGGAGTCACATCTGAGAGCTTTTAAAGTTATGGATAAAGAGCTCAAATTGCATCCTACTTTGGATTGCTTTTGCAGTGGAACAACTGCTGTAACTGTCGTTAAGCAGGGCCAGGATCTTGCAATT
GCAAATGTTGGAGATTCTCGGGCAGTTTTGGGAACAATGTCTGCTGATAACAGGCTGATGGCCGTTCAGTTGACCGTTGATTTAAAGCCAAATCTACCTAgtaagctctttactgttttttatcgacaaccaaggtatttttcaggtgttttggtgctaaaaaagtagttttgcaccattcgtcgttcttgctttatgcc
tctgtaatttgaagttcatgaaattgcgaattagcatatcataaatttttgctttcagaatgcaagaaaattaggatgatcaacttaggagaaatttatactgtcgttgctgaatttagggaagagcatgtaatttttctaaccttccaatgcacttgaagatgcaggatgggagttctttaaagttggaatacatagtt
ttattgctttctagatatatatggaatattgcatttcacatggccagctgagattaagtgccttggtttcagAGGAGGAAGAACGGATAAGGCAGTGTGGAGGTCGAGTGTTTGCTTTAGAAGATGAGCCCGAGGTTCACAGAGTATGGTTACCTGATGATGACTCCCCAGGTCTTGCTATGGCTCGAGCCTTCGGAGAC
TTCTGTCTGAAAGACTTCGGAGTCATTGCTGTTCCAGAAGTCACATACAGACGTCTTACAAATGGAGACCAATTTATTGTGCTTGCAACGGACGGGGTTTGGGATGTTCTGTCAAACCAAGAAGTTGTTAGCATCGTTTCTTCTGCACCTTCTAGGGTAACTGCAGCAAAAGTGGTCGTTGAGACAGCTGTTCGTGCATG
GAAGCGTAAATTCCCAACCTCGAGGGCCGATGACTGTGCTGCTGTATGCTTGTATGTCGACTCAAAATCTTTAGTCTCTCTTGCAAATGGCAACTCTGATCATTCACTAAAAGATGTAAATGCTAAAGAAATACAAGAGGTATGTGATGCCTCTAAGAACAATGCTGAAAGTATTGGTACAAGTACTAACAATACAGATT
TACAAAAGCAAACTGAAAACCTATCCGAAGAAGAGAGGCATGATGGCAAAGATGCCCGTCGGAGCCTTGCTGAATGTATTGCTACAGACCAATGGTCGGCTCTAGATGGTCTGACCAGAGTGAATTCTCTTTTAAGCTTACCCAGATTTATGATGGGGTACAAGAAAGATGATGGATCAAAAAGGAGGCGACGGCGGCTC
TGTTGAATTGAAGAATACTCCTGGTAAAATTGCATGCAACTTTCTTCAAATCTCATATTGAGAGATTGTACACTGTTGTTTTATTTGAAAACCTTCTTGTATTGTACGAAGGCCATGCACTGAAATTATAGGGAACTAAGAATAAAGCTTTTCTTACCGAAACCAACTTCCGGTGAGGCCCAACTCTCTGTATCTACTGA
CTTGCTTTATTTATAGAAAAAATGCAATTACTCTTATACCG
Intron 2 GTAAGCTCTT ... GACAACCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.43 | 15 | 13 | 2 |
| A2 | 41.67 | 7 | 5 | 0 |
| A3 | 36.36 | 21 | 12 | 1 |
| A4 | 13.64 | 19 | 3 | 0 |
| A5 | 35.71 | 9 | 5 | 1 |
| A6 | 18.92 | 30 | 7 | 7 |
| A7 | 23.53 | 39 | 12 | 5 |
| A8 | 28 | 36 | 14 | 6 |
| A9 | 28.57 | 20 | 8 | 5 |
| A10 | 25 | 21 | 7 | 1 |
>TRINITY_DN37961_c0_g1_i3 from sample A8 / Example spliced isoformGCTTTCCACAAAATGACGTCACGAGTTCGAAAGCTCCGGGCGCCCTCGGCCACCAGCTCTTCGTTACACAACAGTACCATGTGCCGTCGCTTCCGCGTCACCGAGTGTACTGCAAACAGAAGTGAGCAGCGGTGGGGCCTTCTAGAAGTCATTACGTTGTCAAATCAAATTAATACTAACACCGACAATGGCTCTCGGGT
ATTGCTGACCTCCCTTTAGAACCAGGGTTTGAAAGAGTATATGCATTCTTCTGCAGTGCAAATACGTCGCGGGGAGTATTTTTATCTTCGACGCTTTGATTTTAGCAGCAGAGACGTTTATTCCGGTGAAAACCCTGTCGATGAAGCTCAGCGCGGAGGCATTCGATGATTCACTGAAATTCTGAGTGTTTAGCTCCCGA
CGTCGTATGTCTTCATGTCTGACATATCGGCTGTAGTCTGGTTCTCATTCTTCGAAAAGGACATGTTCTGTTTGAAATTCTATAAAAGTTTCTGAAAGTGTTCCTTTGAAGGTCTAGCTCGATTTCTCTACAAACTTTCCGGTTAGTGCGCAATCTCTTCGGTCGGTACTCGGCAGTCAGTACTTAGGTTGGATAAGATA
AGCATTTAGCTTTATTGAGCCTTTCTTGTCGGAGTCCCATTGGCACTGCGTTTGAGCTAAAAATAGTAGAAGGAAACATGAAGTTTAAAGCTTCTTTACTACCTAATGGACAAGTGTGAAGTAATGGAAAGATCGCAAGTCAGCGAAGCTATCCGAGTATAATGCATTGTTACCGTGAATCTTTTTCATGAAGAGAGAAA
TATGAAAATTACAAGGTTTTTGACCCTTCAATGCTACCGTAAGATTGTAAAATGGTCATATTGCAACCTGTAAGCCTTCACAGACTTGCATAATGTTCCTCTTCTATTAATTTACGAAGCGATTAGCCTGAAATCTTTTACTATTCTTGACAGTTGAATCCTACTTTAAGATGTATGCATTCCACTAGCCGTGCAAAACG
TGTTAAATGTACCGAGTTTATTCTGTTTTCTGAAGCGAAATTCAAGTCTGGGGTTTGATTCAGCCATGCTGGAGGGGATTCGCCACAAAATCCTTGTACAGAGTTCATTCTCTGCCCTCTTTTAAGCATTTGATCACGGCAACATCCGAAATAGCTATATTTATATTTCTTTTGAGGTCTAGATCACAGTGGATTACTTG
GGGAACAGTTCTCTGGCCCTCAGTATGGGGTCCTGCTTGTCTACATGCGATGGAGTTGCTGATAACTTGCCCAGGAGACAACCTCTAGAAAAAGAGGCTTTAGAAGCTTTGGAAACAGAGGCAAAGATGGATGAGCAGCTGGCTTGTCTTCCCCGCAGAATGTGTGTAAATGGATCGAGTGATATTGCATCAATTTACTC
GCAACAAGGGAAGAAGGGAGTCAACCAGGATTGCATGGTTGTTTGGGAGGATTTTGGATCTCGTGAAGATATAGTCTTCTGTGGTGTTTTTGATGGCCACGGTCCATATGGACATTTGGTGTCAAGAAGAGTCAGAGACTCGTTACCTTCAACATTAATAGATCAATGGCACGAGCTTATTTCAGAGGAATCTAGCTTTT
CCAAGGGGGACTTATCCGAGGATCCTGACAAAGACTGTGAAAGCAAATTAAAAGATGATTCGGGTTCTTGCAAGGATGAATCACAAATGTTTGCCGTATGGAAGGAGTCACATCTGAGAGCTTTTAAAGTTATGGATAAAGAGCTCAAATTGCATCCTACTTTGGATTGCTTTTGCAGTGGAACAACTGCTGTAACTGTC
GTTAAGCAGGGCCAGGATCTTGCAATTGCAAATGTTGGAGATTCTCGGGCAGTTTTGGGAACAATGTCTGCTGATAACAGGCTGATGGCCGTTCAGTTGACCGTTGATTTAAAGCCAAATCTACCTAAGGAGGAAGAACGGATAAGGCAGTGTGGAGGTCGAGTGTTTGCTTTAGAAGATGAGCCCGAGGTTCACAGAGT
ATGGTTACCTGATGATGACTCCCCAGGTCTTGCTATGGCTCGAGCCTTCGGAGACTTCTGTCTGAAAGACTTCGGAGTCATTGCTGTTCCAGAAGTCACATACAGACGTCTTACAAATGGAGACCAATTTATTGTGCTTGCAACGGACGGGGTTTGGGATGTTCTGTCAAACCAAGAAGTTGTTAGCATCGTTTCTTCTG
CACCTTCTAGGGTAACTGCAGCAAAAGTGGTCGTTGAGACAGCTGTTCGTGCATGGAAGCGTAAATTCCCAACCTCGAGGGCCGATGACTGTGCTGCTGTATGCTTGTATGTCGACTCAAAATCTTTAGTCTCTCTTGCAAATGGCAACTCTGATCATTCACTAAAAGATGTAAATGCTAAAGAAATACAAGAGGTATGT
GATGCCTCTAAGAACAATGCTGAAAGTATTGGTACAAGTACTAACAATACAGATTTACAAAAGCAAACTGAAAACCTATCCGAAGAAGAGAGGCATGATGGCAAAGATGCCCGTCGGAGCCTTGCTGAATGTATTGCTACAGACCAATGGTCGGCTCTAGATGGTCTGACCAGAGTGAATTCTCTTTTAAGCTTACCCAG
ATTTATGATGGGGTACAAGAAAGATGATGGATCAAAAAGGAGGCGACGGCGGCTCTGTTGAATTGAAGAATACTCCTGGTAAAATTACATGCAACTTTCTTCAAATCTCATATTGAGAGATTGTACACTGTTGTTTTATTTGAAAACCTTCTTGTATTGTACGAAGGCCATGCACTGAAATTATAGGGAACTAAGAATAA
AGCTTTTCTTACCGAAACCAACTTCCGGTGAGGCCCAACTCTCTGTATCTACTGACTTGCTTTATTTATAGAAAAAATGCAATTACTCTTATACCGAAACCAACTTCCGGTGAG
>TRINITY_DN37961_c0_g1_i2 from sample A8 / Example unspliced isoform:GCTTTCCACAAAATGACGTCACGAGTTCGAAAGCTCCGGGCGCCCTCGGCCACCAGCTCTTCGTTACACAACAGTACCATGTGCCGTCGCTTCCGCGTCACCGAGTGTACTGCAAACAGAAGTGAGCAGCGGTGGGGCCTTCTAGAAGTCATTACGTTGTCAAATCAAATTAATACTAACACCGACAATGGCTCTCGGGT
ATTGCTGACCTCCCTTTAGAACCAGGGTTTGAAAGAGTATATGCATTCTTCTGCAGTGCAAATACGTCGCGGGGAGTATTTTTATCTTCGACGCTTTGATTTTAGCAGCAGAGACGTTTATTCCGGTGAAAACCCTGTCGATGAAGCTCAGCGCGGAGGCATTCGATGATTCACTGAAATTCTGAGTGTTTAGCTCCCGA
CGTCGTATGTCTTCATGTCTGACATATCGGCTGTAGTCTGGTTCTCATTCTTCGAAAAGGACATGTTCTGTTTGAAATTCTATAAAAGTTTCTGAAAGTGTTCCTTTGAAGGTCTAGCTCGATTTCTCTACAAACTTTCCGGTTAGTGCGCAATCTCTTCGGTCGGTACTCGGCAGTCAGTACTTAGGTTGGATAAGATA
AGCATTTAGCTTTATTGAGCCTTTCTTGTCGGAGTCCCATTGGCACTGCGTTTGAGCTAAAAATAGTAGAAGGAAACATGAAGTTTAAAGCTTCTTTACTACCTAATGGACAAGTGTGAAGTAATGGAAAGATCGCAAGTCAGCGAAGCTATCCGAGTATAATGCATTGTTACCGTGAATCTTTTTCATGAAGAGAGAAA
TATGAAAATTACAAGGTTTTTGACCCTTCAATGCTACCGTAAGATTGTAAAATGGTCATATTGCAACCTGTAAGCCTTCACAGACTTGCATAATGTTCCTCTTCTATTAATTTACGAAGCGATTAGCCTGAAATCTTTTACTATTCTTGACAGTTGAATCCTACTTTAAGATGTATGCATTCCACTAGCCGTGCAAAACG
TGTTAAATGTACCGAGTTTATTCTGTTTTCTGAAGCGAAATTCAAGTCTGGGGTTTGATTCAGCCATGCTGGAGGGGATTCGCCACAAAATCCTTGTACAGAGTTCATTCTCTGCCCTCTTTTAAGCATTTGATCACGGCAACATCCGAAATAGCTATATTTATATTTCTTTTGAGGTCTAGATCACAGTGGATTACTTG
GGGAACAGTTCTCTGGCCCTCAGTATGGGGTCCTGCTTGTCTACATGCGATGGAGTTGCTGATAACTTGCCCAGGAGACAACCTCTAGAAAAAGAGGCTTTAGAAGCTTTGGAAACAGAGGCAAAGATGGATGAGCAGCTGGCTTGTCTTCCCCGCAGAATGTGTGTAAATGGATCGAGTGATATTGCATCAATTTACTC
GCAACAAGGGAAGAAGGGAGTCAACCAGGATTGCATGGTTGTTTGGGAGGATTTTGGATCTCGTGAAGATATAGTCTTCTGTGGTGTTTTTGATGGCCACGGTCCATATGGACATTTGGTGTCAAGAAGAGTCAGAGACTCGTTACCTTCAACATTAATAGATCAATGGCACGAGCTTATTTCAGAGGAATCTAGCTTTT
CCAAGGGGGACTTATCCGAGGATCCTGACAAAGACTGTGAAAGCAAATTAAAAGATGATTCGGGTTCTTGCAAGGATGAATCACAAATGTTTGCCGTATGGAAGGAGTCACATCTGAGAGCTTTTAAAGTTATGGATAAAGAGCTCAAATTGCATCCTACTTTGGATTGCTTTTGCAGTGGAACAACTGCTGTAACTGTC
GTTAAGCAGGGCCAGGATCTTGCAATTGCAAATGTTGGAGATTCTCGGGCAGTTTTGGGAACAATGTCTGCTGATAACAGGCTGATGGCCGTTCAGTTGACCGTTGATTTAAAGCCAAATCTACCTAgtaagctctttactgttttttatcgacaaccaagAGGAGGAAGAACGGATAAGGCAGTGTGGAGGTCGAGTGT
TTGCTTTAGAAGATGAGCCCGAGGTTCACAGAGTATGGTTACCTGATGATGACTCCCCAGGTCTTGCTATGGCTCGAGCCTTCGGAGACTTCTGTCTGAAAGACTTCGGAGTCATTGCTGTTCCAGAAGTCACATACAGACGTCTTACAAATGGAGACCAATTTATTGTGCTTGCAACGGACGGGGTTTGGGATGTTCTG
TCAAACCAAGAAGTTGTTAGCATCGTTTCTTCTGCACCTTCTAGGGTAACTGCAGCAAAAGTGGTCGTTGAGACAGCTGTTCGTGCATGGAAGCGTAAATTCCCAACCTCGAGGGCCGATGACTGTGCTGCTGTATGCTTGTATGTCGACTCAAAATCTTTAGTCTCTCTTGCAAATGGCAACTCTGATCATTCACTAAA
AGATGTAAATGCTAAAGAAATACAAGAGGTATGTGATGCCTCTAAGAACAATGCTGAAAGTATTGGTACAAGTACTAACAATACAGATTTACAAAAGCAAACTGAAAACCTATCCGAAGAAGAGAGGCATGATGGCAAAGATGCCCGTCGGAGCCTTGCTGAATGTATTGCTACAGACCAATGGTCGGCTCTAGATGGTC
TGACCAGAGTGAATTCTCTTTTAAGCTTACCCAGATTTATGATGGGGTACAAGAAAGATGATGGATCAAAAAGGAGGCGACGGCGGCTCTGTTGAATTGAAGAATACTCCTGGTAAAATTACATGCAACTTTCTTCAAATCTCATATTGAGAGATTGTACACTGTTGTTTTATTTGAAAACCTTCTTGTATTGTACGAAG
GCCATGCACTGAAATTATAGGGAACTAAGAATAAAGCTTTTCTTACCGAAACCAACTTCCGGTGAGGCCCAACTCTCTGTATCTACTGACTTGCTTTATTTATAGAAAAAATGCAATTACTCTTATACCGAAACCAACTTCCGGTGAG
Intron 3 GTTAGTGCGC ... TTTTCTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.14 | 9 | 11 | 14 |
| A2 | 45.83 | 13 | 15 | 7 |
| A3 | 57.14 | 15 | 29 | 11 |
| A4 | 59.04 | 17 | 30 | 19 |
| A5 | 100 | 0 | 5 | 1 |
| A6 | 66.67 | 3 | 6 | 6 |
| A7 | 60 | 7 | 13 | 8 |
| A8 | 84.62 | 1 | 7 | 4 |
| A9 | 60 | 5 | 7 | 8 |
| A10 | 62.5 | 9 | 13 | 17 |
>TRINITY_DN108485_c0_g1_i5 from sample A2 / Example spliced isoformGCTCCGGGCGCCCTCGGCCACCAGCTCTTCGTTACACAACAGTACCATGTGCCGTCGCTTCCGCGTCACCGAGTGTACTGCAAACAGAAGTGAGCAGCGGTGGGGCCTTCTAGAAGTCATTACGTTGTCAAATCAAATTAATACTAACACCGACAATGGCTCTCGGGTATTGCTGACCTCCCTTTAGAACCAGGGTTTGA
AAGAGTATATGCATTCTTCTGCAGTGCAAATACGTCGCGGGGAGTATTTTTATCTTCGACGCTTTGATTTTAGCAGCAGAGACGTTTATTCCGGTGAAAACCCTGTCGATGAAGCTCAGCGCGGAGGCATTCGATGATTCACTGAAATTCTGAGTGTTTAGCTCCCGACGTCGTATGTCTTCATGTCTGACATATCGGCT
GTAGTCTGGTTCTCATTCTTCGAAAAGGACATGTTCTGTTTGAAATTCTATAAAAGTTTCTGAAAGTGTTCCTTTGAAGGTCTAGCTCGATTTCTCTACAAACTTTCCGCGAAATTCAAGTCTGGGGTTTGATTCAGCCATGCTGGAGGGGATTCGCCACAAAATCCTTGTACAGAGTTCATTCTCTGCCCTCTTTTAAG
CATTTGATCACGGCAACATCCGAAATAGCTATATTTATATTTCTTTTGAGGTCTAGATCACAGTGGATTACTTGGGGAACAGTTCTCTGGCCCTCAGTATGGGGTCCTGCTTGTCTACATGCGATGGAGTTGCTGATAACTTGCCCAGGAGACAACCTCTAGAAAAAGAGGCTTTAGAAGCTTTGGAAACAGAGGCAAAG
ATGGATGAGCAGCTGGCTTGTCTTCCCCGCAGAATGTGTGTAAATGGATCGAGTGATATTGCATCAATTTACTCGCAACAAGGGAAGAAGGGAGTCAACCAGGATTGCATGGTTGTTTGGGAGGATTTTGGATCTCGTGAAGATTTGGTCTTCTGTGGTGTTTTTGATGGCCACGGTCCATATGGACATTTGGTGTCAAG
AAGAGTCAGAGACTCGTTACCTTCAACATTAATAGATCAATGGCACGAGCTTATTTCAGAGGAATCTAGCTTTTCCAAGGGGGACTTATCCGAGGATCCTGACAAAGACTGTGAAAGCAAATTAAAAGATGATTCGGGTTCTTGCAAGGATGAATCACAAATGTTTGCCGTATGGAAGGAGTCACATCTGAGAGCTTTTA
AAGTTATGGATAAAGAGCTCAAATTGCATCCTACTTTGGATTGCTTTTGCAGTGGAACAACTGCTGTAACTGTCGTTAAGCAGGGCCAGGATCTTGCAATTGCAAATGTTGGAGATTCTCGGGCAGTTTTGGGAACAATGTCTGCTGATAACAGGCTGATGGCCGTTCAGTTGACCGTTGATTTAAAGCCAAATCTACCT
AAGGAGGAAGAACGGATAAGGCAGTGTGGAGGTCGAGTGTTTGCTTTAGAAGATGAGCCCGAGGTTCACAGAGTATGGTTACCTGATGATGACTCCCCAGGTCTTGCTATGGCTCGAGCCTTCGGAGACTTCTGTCTGAAAGACTTCGGAGTCATTGCTGTTCCAGAAGTCACATACAGACGTCTTACAAATGGAGACCA
ATTTATTGTGCTTGCAACGGACGGGGTTTGGGATGTTCTGTCAAACCAAGAAGTTGTTAGCATCGTTTCTTCTGCACCTTCTAGGGTAACTGCAGCAAAAGTGGTCGTTGAGACAGCTGTTCGTGCATGGAAGCGTAAATTCCCAACCTCGAGGGCCGATGACTGTGCTGCTGTATGCTTGTATGTCGACTCAAAATCTT
TAGTCTCTCTTGCAAATGGCAACTCTGATCATTCACTAAAAGATGTAAATGCTAAAGAAATACAAGAGGTATGTGATGCCTCTAAGAACAATGCTGAAAGTATTGGTACAAGTACTAACAATACAGATTTACAAAAGCAAACTGAAAACCTATCCGAAGAAGAGAGGCATGATGGCAAAGATGCCCGTCGGAGCCTTGCT
GAATGTATTGCTACAGACCAATGGTCGGCTCTAGATGGTCTGACCAGAGTGAATTCTCTTTTAAGCTTACCCAGATTTATGATGGGGTACAAGAAAGATGATGGATCAAAAAGGAGGCGACGGCGGCTCTGTTGAATTGAAGAATACTCCTGGTAAAATTGCATGCAACTTTCTTCAAATCTCATATTGAGAGATTGTAC
ACTGTTGTTTTATTTGAAAACCTTCTTGTATTGTACGAAGGCCATGCACTGAAATTATAGGGAACTAAGAATAAAGCTTTTCTTACCGAAACCAACTTCCGGTGAGGCCCAACTCTCTGTATCTACTGACTTGCTTTATTTATAGAAAAAATGCAATTACTCTTATACCGAAACCAACTTCCGGTGAGGCCCAACTCTCT
GTATCTACTGACTTGCTTTATTTATAGAAAAAATGCAATTACTCTTATACCGAAACCAACTTCCGGTGAG
>TRINITY_DN108485_c0_g1_i6 from sample A2 / Example unspliced isoform:GTAAATTTAGATTCTCTTTCATTTTCTTAAATCATGAAATTTTGATCCGTGATACGTTAAATTCTCCGTTGTTTGCAGCTCCCGACGTCGTATGTCTTCATGTCTGACATATCGGCTGTAGTCTGGTTCTCATTCTTCGAAAAGGACATGTTCTGTTTGAAATTCTATAAAAGTTTCTGAAAGTGTTCCTTTGAAGGTCT
AGCTCGATTTCTCTACAAACTTTCCGgttagtgcgcaatctcttcggtcggtactcggcagtcagtacttaggttggataagataagcatttagctttattgagcctttcttgtcggagtcccattggcactgcgtttgagctaaaaatagtagaaggaaacatgaagtttaaagcttctttactacctaatggacaagt
gtgaagtaatggaaagatcgcaagtcagcgaagctatccgagtataatgcattgttaccgtgaatctttttcatgaagagagaaatatgaaaattacaaggtttttgacccttcaatgctaccgtaagattgtaaaatggtcatattgcaacctgtaagccttcacagacttgcataatgttcctcttctattaatttac
gaagcgattagcctgaaatcttttactattcttgacagttgaatcctactttaagatgtatgcattccactagccgtgcaaaacgtgttaaatgtaccgagtttattctgttttctgaagCGAAATTCAAGTCTGGGGTTTGATTCAGCCATGCTGGAGGGGATTCGCCACAAAATCCTTGTACAGAGTTCATTCTCTGC
CCTCTTTTAAGCATTTGATCACGGCAACATCCGAAATAGCTATATTTATATTTCTTTTGAGGTCTAGATCACAGTGGATTACTTGGGGAACAGTTCTCTGGCCCTCAGTATGGGGTCCTGCTTGTCTACATGCGATGGAGTTGCTGATAACTTGCCCAGGAGACAACCTCTAGAAAAAGAGGCTTTAGAAGCTTTGGAAA
CAGAGGCAAAGATGGATGAGCAGCTGGCTTGTCTTCCCCGCAGAATGTGTGTAAATGGATCGAGTGATATTGCATCAATTTACTCGCAACAAGGGAAGAAGGGAGTCAACCAGGATTGCATGGTTGTTTGGGAGGTATTTGGCCTTCATTTCCACTCCTCTTATACTCTTGGATGCAAAATTCAAGTAATTCTTTCAGTT
AAGCAATTAAATGAAGCGAAATAGTTTCATAATCATTAAAAATGTCTATTTTAACTGGTTGAACGATAGATGTTTTTATCATGACCCTATAAAAACATGTGAATAATTTGGGGATATTTCACATGTTCGGTTTTAAGAACATTTGGGCCTCTGC
Intron 4 GTGAGCAGCG ... TCTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.27 | 9 | 14 | 17 |
| A2 | 100 | 0 | 4 | 2 |
| A3 | 64.71 | 6 | 5 | 17 |
| A4 | 72.97 | 5 | 9 | 18 |
| A5 | 100 | 0 | 5 | 2 |
| A6 | 86.67 | 1 | 6 | 7 |
| A7 | 72 | 7 | 11 | 25 |
| A8 | 100 | 0 | 2 | 1 |
| A9 | 75 | 3 | 7 | 11 |
| A10 | 60.98 | 8 | 14 | 11 |
>TRINITY_DN118790_c0_g2_i6 from sample A1 / Example spliced isoformGTCACGAGTTCGAAAGCTCCGGGCGCCCTCGGCCACCAGCTCTTCGTTACACAACAGTACCATGTGCCGTCGCTTCCGCGTCACCGAGTGTACTGCAAACAGAATGCAAATACGTCGCGGGGAGTATTTTTATCTTCGACGCTTTGATTTTAGCAGCAGAGACGTTTATTCCGGTGAAAACCCTGTCGATGAAGCTCAGC
GCGGAGGCATTCGATGATTCACTGAAATTCTGAGTGTTTAGCTCCCGACGTCGTATGTCTTCATGTCTGACATATCGGCTGTAGTCTGGTTCTCATTCTTCGAAAAGGACATGTTCTGTTTGAAATTCTATAAAAGTTTCTGAAAGTGTTCCTTTGAAGGTCTAGCTCGATTTCTCTACAAACTTTCCGGTTAGTGCGCA
ATCTCTTCGGTCGGTACTCGGCAGTCAGTACTTAGGTTGGATAAGATAAGCATTTAGCTTTATTGAGCCTTTCTTGTCGGAGTCCCATTGGCACTGCGTTTGAGCTAAAAATAGTAGAAGGAAACATGAAGTTTAAAGCTTCTTTACTACCTAATGGACAAGTGTGAAGTAATGGAAAGATCGCAAGTCAGCGAAGCTAT
CCGAGTATAATGCATTGTTACCGTGAATCTTTTTCATGAAGAGAGAAATATGAAAATTACAAGGTTTTTGACCCTTCAATGCTACCGTAAGATTGTAAAATGGTCATATTGCAACCTGTAAGCCTTCACAGACTTGCATAATGTTCCTCTTCTATTAATTTACGAAGCGATTAGCCTGAAATCTTTTACTATTCTTGACA
GTTGAATCCTACTTTAAGATGTATGCATTCCACTAGCCGTGCAAAACGTGTTAAATGTACCGAGTTTATTCTGTTTTCTGAAGCGAAATTCAAGTCTGGGGTTTGATTCAGCCATGCTGGAGGGGATTCGCCACAAAATCCTTGTACAGAGTTCATTCTCTGCCCTCTTTTAAGCATTTGATCACGGCAACATCCGAAAT
AGCTATATTTATATTTCTTTTGAGGTCTAGATCACAGTGGATTACTTGGGGAACAGTTCTCTGGCCCTCAGTATGGGGTCCTGCTTGTCTACATGCGATGGAGTTGCTGATAACTTGCCCAGGAGACAACCTCTAGAAAAAGAGGCTTTAGAAGCTTTGGAAACAGAGGCAAAGATGGATGAGCAGCTGGCTTGTCTTCC
CCGCAGAATGTGTGTAAATGGATCGAGTGATATTGCATCAATTTACTCGCAACAAGGGAAGAAGGGAGTCAACCAGGATTGCATGGTTGTTTGGGAGGATTTTGGATCTCGTGAAGATATAGTCTTCTGTGGTGTTTTTGATGGCCACGGTCCATATGGACATTTGGTGTCAAGAAGAGTCAGAGACTCGTTACCTTCAA
CATTAATAGATCAATGGCACGAGCTTATTTCAGAGGAATCTAGCTTTTCCAAGGGGGACTTATCCGAGGATCCTGACAAAGACTGTGAAAGCAAATTAAAAGATGATTCGGGTTCTTGCAAGGATGAATCACAAATGTTTGCCGTATGGAAGGAGTCACATCTGAGAGCTTTTAAAGTTATGGATAAAGAGCTCAAATTG
CATCCTACTTTGGATTGCTTTTGCAGTGGAACAACTGCTGTAACTGTCGTTAAGCAGGGCCAGGATCTTGCAATTGCAAATGTTGGAGATTCTCGGGCAGTTTTGGGAACAATGTCTGCTGATAACAGGCTGATGGCCGTTCAGTTGACCGTTGATTTAAAGCCAAATCTACCTAAGGAGGAAGAACGGATAAGGCAGTG
TGGAGGTCGAGTGTTTGCTTTAGAAGATGAGCCCGAGGTTCACAGAGTATGGTTACCTGATGATGACTCCCCAGGTCTTGCTATGGCTCGAGCCTTCGGAGACTTCTGTCTGAAAGACTTCGGAGTCATTGCTGTTCCAGAAGTCACATACAGACGTCTTACAAATGGAGACCAATTTATTGTGCTTGCAACGGACGGGG
TTTGGGATGTTCTGTCAAACCAAGAAGTTGTTAGCATCGTTTCTTCTGCACCTTCTAGGGTAACTGCAGCAAAAGTGGTCGTTGAGACAGCTGTTCGTGCATGGAAGCGTAAATTCCCAACCTCGAGGGCCGATGACTGTGCTGCTGTATGCTTGTATGTCGACTCAAAATCTTTAGTCTCTCTTGCAAATGGCAACTCT
GATCATTCACTAAAAGATGTAAATGCTAAAGAAATACAAGAGGTATGTGATGCCTCTAAGAACAATGCTGAAAGTATTGGTACAAGTACTAACAATACAGATTTACAAAAGCAAACTGAAAACCTATCCGAAGAAGAGAGGCATGATGGCAAAGATGCCCGTCGGAGCCTTGCTGAATGTATTGCTACAGACCAATGGTC
GGCTCTAGATGGTCTGACCAGAGTGAATTCTCTTTTAAGCTTACCCAGATTTATGATGGGGTACAAGAAAGATGATGGATCAAAAAGGAGGCGACGGCGGCTCTGTTGAATTGAAGAATACTCCTGGTAAAATTGCATGCAACTTTCTTCAAATCTCATATTGAGAGATTGTACACTGTTGTTTTATTTGAAAACCTTCT
TGTATTGTACGAAGGCCATGCACTGAAATTATAGGGAACTAAGAATAAAGCTTTTCTTACCGAAACCAACTTCCGGTGAGGCCCAACTCTCTGTATCTAC
>TRINITY_DN118790_c0_g2_i4 from sample A1 / Example unspliced isoform:GTCACGAGTTCGAAAGCTCCGGGCGCCCTCGGCCACCAGCTCTTCGTTACACAACAGTACCATGTGCCGTCGCTTCCGCGTCACCGAGTGTACTGCAAACAGAAgtgagcagcggtggggccttctagaagtcattacgttgtcaaatcaaattaatactaacaccgacaatggctctcgggtattgctgacctcccttt
agaaccagggtttgaaagagtatatgcattcttctgcagTGCAAATACGTCGCGGGGAGTATTTTTATCTTCGACGCTTTGATTTTAGCAGCAGAGACGTTTATTCCGGTGAAAACCCTGTCGATGAAGCTCAGCGCGGAGGCATTCGATGATTCACTGAAATTCTGAGTGTTTAGCTCCCGACGTCGTATGTCTTCATG
TCTGACATATCGGCTGTAGTCTGGTTCTCATTCTTCGAAAAGGACATGTTCTGTTTGAAATTCTATAAAAGTTTCTGAAAGTGTTCCTTTGAAGGTCTAGCTCGATTTCTCTACAAACTTTCCGGTTAGTGCGCAATCTCTTCGGTCGGTACTCGGCAGTCAGTACTTAGGTTGGATAAGATAAGCATTTAGCTTTATTG
AGCCTTTCTTGTCGGAGTCCCATTGGCACTGCGTTTGAGCTAAAAATAGTAGAAGGAAACATGAAGTTTAAAGCTTCTTTACTACCTAATGGACAAGTGTGAAGTAATGGAAAGATCGCAAGTCAGCGAAGCTATCCGAGTATAATGCATTGTTACCGTGAATCTTTTTCATGAAGAGAGAAATATGAAAATTACAAGGT
TTTTGACCCTTCAATGCTACCGTAAGATTGTAAAATGGTCATATTGCAACCTGTAAGCCTTCACAGACTTGCATAATGTTCCTCTTCTATTAATTTACGAAGCGATTAGCCTGAAATCTTTTACTATTCTTGACAGTTGAATCCTACTTTAAGATGTATGCATTCCACTAGCCGTGCAAAACGTGTTAAATGTACCGAGT
TTATTCTGTTTTCTGAAGCGAAATTCAAGTCTGGGGTTTGATTCAGCCATGCTGGAGGGGATTCGCCACAAAATCCTTGTACAGAGTTCATTCTCTGCCCTCTTTTAAGCATTTGATCACGGCAACATCCGAAATAGCTATATTTATATTTCTTTTGAGGTCTAGATCACAGTGGATTACTTGGGGAACAGTTCTCTGGC
CCTCAGTATGGGGTCCTGCTTGTCTACATGCGATGGAGTTGCTGATAACTTGCCCAGGAGACAACCTCTAGAAAAAGAGGCTTTAGAAGCTTTGGAAACAGAGGCAAAGATGGATGAGCAGCTGGCTTGTCTTCCCCGCAGAATGTGTGTAAATGGATCGAGTGATATTGCATCAATTTACTCGCAACAAGGGAAGAAGG
GAGTCAACCAGGATTGCATGGTTGTTTGGGAGGATTTTGGATCTCGTGAAGATATAGTCTTCTGTGGTGTTTTTGATGGCCACGGTCCATATGGACATTTGGTGTCAAGAAGAGTCAGAGACTCGTTACCTTCAACATTAATAGATCAATGGCACGAGCTTATTTCAGAGGAATCTAGCTTTTCCAAGGGGGACTTATCC
GAGGATCCTGACAAAGACTGTGAAAGCAAATTAAAAGATGATTCGGGTTCTTGCAAGGATGAATCACAAATGTTTGCCGTATGGAAGGAGTCACATCTGAGAGCTTTTAAAGTTATGGATAAAGAGCTCAAATTGCATCCTACTTTGGATTGCTTTTGCAGTGGAACAACTGCTGTAACTGTCGTTAAGCAGGGCCAGGA
TCTTGCAATTGCAAATGTTGGAGATTCTCGGGCAGTTTTGGGAACAATGTCTGCTGATAACAGGCTGATGGCCGTTCAGTTGACCGTTGATTTAAAGCCAAATCTACCTAAGGAGGAAGAACGGATAAGGCAGTGTGGAGGTCGAGTGTTTGCTTTAGAAGATGAGCCCGAGGTTCACAGAGTATGGTTACCTGATGATG
ACTCCCCAGGTCTTGCTATGGCTCGAGCCTTCGGAGACTTCTGTCTGAAAGACTTCGGAGTCATTGCTGTTCCAGAAGTCACATACAGACGTCTTACAAATGGAGACCAATTTATTGTGCTTGCAACGGACGGGGTTTGGGATGTTCTGTCAAACCAAGAAGTTGTTAGCATCGTTTCTTCTGCACCTTCTAGGGTAACT
GCAGCAAAAGTGGTCGTTGAGACAGCTGTTCGTGCATGGAAGCGTAAATTCCCAACCTCGAGGGCCGATGACTGTGCTGCTGTATGCTTGTATGTCGACTCAAAATCTTTAGTCTCTCTTGCAAATGGCAACTCTGATCATTCACTAAAAGATGTAAATGCTAAAGAAATACAAGAGGTATGTGATGCCTCTAAGAACAA
TGCTGAAAGTATTGGTACAAGTACTAACAATACAGATTTACAAAAGCAAACTGAAAACCTATCCGAAGAAGAGAGGCATGATGGCAAAGATGCCCGTCGGAGCCTTGCTGAATGTATTGCTACAGACCAATGGTCGGCTCTAGATGGTCTGACCAGAGTGAATTCTCTTTTAAGCTTACCCAGATTTATGATGGGGTACA
AGAAAGATGATGGATCAAAAAGGAGGCGACGGCGGCTCTGTTGAATTGAAGAATACTCCTGGTAAAATTGCATGCAACTTTCTTCAAATCTCATATTGAGAGATTGTACACTGTTGTTTTATTTGAAAACCTTCTTGTATTGTACGAAGGCCATGCACTGAAATTATAGGGAACTAAGAATAAAGCTTTTCTTACCGAAA
CCAACTTCCGGTGAGGCCCAACTCTCTGTATCTAC