sp|A0A059TC02|CCR1_PETHY ----> Cinnamoyl-CoA reductase 1
Intron 1 GTGAGCATTT ... TTGAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 2 | 0 | 0 |
| A2 | 33.33 | 1 | 1 | 0 |
| A3 | 27.27 | 8 | 0 | 6 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 50 | 1 | 1 | 1 |
| A6 | 25.71 | 13 | 1 | 8 |
| A7 | 25.58 | 16 | 5 | 6 |
| A8 | 14.29 | 12 | 1 | 3 |
| A9 | 21.43 | 22 | 3 | 9 |
| A10 | 20 | 4 | 0 | 2 |
>TRINITY_DN38903_c0_g1_i4 from sample A6 / Example spliced isoformGGGAGAGACTGTAAACAGAGGTCTGTGTGTGGATTTCAGCTAAAATGGGGGAGGTGGTGTGTGTGACTGGAGCCAGTGGATTCATTGGATCTTGGGTCGTTCGTTTGTTGTTGGAACGTGGTTATACCGTGCATGCCACTGTTCAAGATCTTGGAAATTGGAAGGAGACTAAACATCTAGAAGCAATGGAAGGAGCGAAA
GAGAGGCTCAAGTTATTTAAAATGGATTTAATGGATTATCAGTCTATCCAAGATGCCATTGATGGGTGTTCTGGTGTCTTTCATTTAGCCATGCCTAATACTATTGAGGCAGTGGAAGATCCTCAAAAGCAACTGCTGGATCCAGGCATTAAGGGCACACTGAACGTGCTGGAAGCAGCACACAAAGCCAAAGTGAGGCG
TGTGGTATTGACCTCTTCGGTGTCTGCCATAATTCCCAACCCCAAATGGCCTGTAGGCAAGCCCTTGGACGAAAGCTGCTGGACAGATCTAGATTACTGCAGAGAGAATGGAATTTGGTATACAGTTGCAAAAACATTGGCTGAAAAGGCAGCATGGGATTTTTCCAAGGAGAAGGGTTTGGATGTAGTTGCTATCAACC
CAGGGACTGCTCTGGGACCAATATTGCCACCTGATATGAATGCCAGCATGGCCATGATTGTCAAACTCCTTCAAGGTAATAAAGAAGAATATCGAAATTTTTTTATGGGCTGTGCAAATGTAAAGGATATTGCAAAAGGTCAGATATTACTTTATGAAACGCCTTCAGCCTCTGGGAGGCACCTTTGTGTCGAGTCTATA
GCCCATTGGAGCGACTTTGCCGAATTGACAGCGAAACTATATCCTGAATATAATGTGCACAAGTTTACAACTGTCACACAACCTAACTTGGTACGTGTTAAGAATGCACCAAAGAAATTGATTGACCTTGGGCTTCAATTCACATCCATGGAAGGGATAATCAAAGATTGTGTTTCCACACTAAGTGAGAAAGGATTTTT
GGATGGATTGCCATAGAATAGGCAAATGCTTTTCTAAATAAGTTTTAAGTCATAAAACTATATATCTACATAACTAAGCATTTCTAGTAAGTTTTTGAGTTTTAACGGATATATGATATTATCTTTTTATAATAATGAACATCAAGTTCCTTCTTAAATATTTGTTGGAAAGAAAC
>TRINITY_DN38903_c0_g1_i3 from sample A6 / Example unspliced isoform:GGGAGAGACTGTAAACAGAGGTCTGTGTGTGGATTTCAGCTAAAATGGGGGAGGTGGTGTGTGTGACTGGAGCCAGTGGATTCATTGGATCTTGGGTCGTTCGTTTGTTGTTGGAACGTGGTTATACCGTGCATGCCACTGTTCAAGATCTTGGAAATTGGAAGGAGACTAAACATCTAGAAGCAATGGAAGGAGCGAAA
GAGAGGCTCAAGTTATTTAAAATGGATTTAATGGATTATCAGTCTATCCAAGATGCCATTGATGGGTGTTCTGGTGTCTTTCATTTAGCCATGCCTAATACTATTGAGGCAGTGGAAGATCCTCAAAAGCAACTGCTGGATCCAGGCATTAAGGGCACACTGAACGTGCTGGAAGCAGCACACAAAGCCAAAGTGAGGCG
TGTGGTATTGACCTCTTCGGTGTCTGCCATAATTCCCAACCCCAAATGGCCTGTAGGCAAGCCCTTGGACGAAAGCTGCTGGACAGATCTAGATTACTGCAGAGAGAATGGAgtgagcatttcttttaaaatattaggattaataaatggattgattcacttttataaaagttcaatcttaagcaagtctgtctcttgga
acacttaattcttaagcatttctccttagttgcacagtgtatacatttacataaatgtatatatatctttgtgataatattgaattgaatgcagatctatccatttttttaatattgaattgaatgcagATTTGGTATACAGTTGCAAAAACATTGGCTGAAAAGGCAGCATGGGATTTTTCCAAGGAGAAGGGTTTGGA
TGTAGTTGCTATCAACCCAGGGACTGCTCTGGGACCAATATTGCCACCTGATATGAATGCCAGCATGGCCATGATTGTCAAACTCCTTCAAGGTAATAAAGAAGAATATCGAAATTTTTTTATGGGCTGTGCAAATGTAAAGGATATTGCAAAAGGTCAGATATTACTTTATGAAACGCCTTCAGCCTCTGGGAGGCACC
TTTGTGTCGAGTCTATAGCCCATTGGAGCGACTTTGCCGAATTGACAGCGAAACTATATCCTGAATATAATGTGCACAAGTTTACAACTGTCACACAACCTAACTTGGTACGTGTTAAGAATGCACCAAAGAAATTGATTGACCTTGGGCTTCAATTCACATCCATGGAAGGGATAATCAAAGATTGTGTTTCCACACTA
AGTGAGAAAGGATTTTTGGATGGATTGCCATAGAATAGGCAAATGCTTTTCTAAATAAGTTTCAAGTCATAAAACTATATATCTGCATAACTAAGCATTTCTAGTAAGCTTTTGAGTTTTAACGGATATATGATATTATCTTTTTATAATAATGAACATCAAGTTCCTTCTTAAATATTTGTTGGAAAGAAAC
Intron 2 GTAAAGTATG ... TGGGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.33 | 5 | 1 | 7 |
| A2 | 60 | 2 | 1 | 3 |
| A3 | 52.94 | 8 | 2 | 9 |
| A4 | 50 | 8 | 0 | 8 |
| A5 | 75 | 2 | 3 | 6 |
| A6 | 50 | 16 | 1 | 16 |
| A7 | 50 | 7 | 2 | 7 |
| A8 | 36.36 | 7 | 0 | 4 |
| A9 | 61.29 | 12 | 7 | 19 |
| A10 | 48.65 | 19 | 0 | 18 |
>TRINITY_DN37643_c0_g1_i4 from sample A9 / Example spliced isoformCAGATTTGGGGGAGAGACTGTAAACAGGTGGGGTTTTCGTGATAAGAGGTCTGTGTGTGGATTTCAGCTAAAATGGGGGAGGTGGTGTGTGTGACTGGAGCCAGTGGATTCATTGGATCTTGGGTCGTTCGTTTGTTGTTGGAACGTGGTTATACCGTGCATGCCACTGTTCAAGATCTTGGAAATTGGAAGGAGACTAA
ACATCTAGAAGCAATGGAAGGAGCGAAAGAGAGGCTCAAGTTATTTAAAATGGATTTAATGGATTATCAGTCTATCCAAGATGCCATTGATGGGTGTTCTGGTGTCTTTCATTTAGCCATGCCTAATACTATTGAGGCAGTGGAAGATCCTCAAAAGCAACTGCTGGATCCAGGCATTAAGGGCACACTGAACGTGCTGG
AAGCAGCACACAAAGCCAAAGTGAGGCGTGTGGTATTGACCTCTTCGGTGTCTGCCATAATTCCCAACCCCAAATGGCCTGTAGGCAAGCCCTTGGACGAAAGCTGCTGGACAGATCTAGATTACTGCAGAGAGAATGGAATTTGGTATACAGTTGCAAAAACATTGGCTGAAAAGGCAGCATGGGATTTTTCCAAGGAG
AAGGGTTTGGATGTAGTTGCTATCAACCCAGGGACTGCTCTGGGACCAATATTGCCACCTGATATGAATGCCAGCATGGCCATGATTGTCAAACTCCTTCAAGGTAATAAAGAAGAATATCAAAATTTTTTTATGGGCTGTGCAAATGTAAAGGATATTGCAAAAGGTCAAATATTACTTTATGAAACGCCTTCAGCCTC
TGGGAGGCACCTTTGTGTCGAGTCTATAGCCCATTGGAGCGACTTTGCCGAATTGACAGCGAAACTATATCCTGAATATAATGTGCACAAGTTTACAACTGTCACACAACCTAACTTGGTACGTGTTAAGAATGCACCAAAGAAATTGATTGACCTTGGGCTTCAATTCACATCCATGGAAGGGATAATCAAAGATTGTG
TTTCCACACTAAGTGAGAAAGGATTTTTGGATGGATTGCCATAGAATAGGCAAATGCTTTTCTAAATAAGTTTTAAGTCATAAAACTATATATCTACATAACTAAGCATTTCTAGTAAGTTTTTGAGTTTTAACGGATATATGATATTATCTTTTTATAATAATGAACATCAAGTTCCTTCT
>TRINITY_DN37643_c0_g1_i2 from sample A9 / Example unspliced isoform:CAGATTTGGGGGAGAGACTGTAAACAGGTGGGGTTTTCGTGATAAGgtaaagtatgctcgttattggtttagagtagatgtgtgcagcgattaaaactgaattcttttttgggttgcagAGGTCTGTGTGTGGATTTCAGCTAAAATGGGGGAGGTGGTGTGTGTGACTGGAGCCAGTGGATTCATTGGATCTTGGGTCG
TTCGTTTGTTGTTGGAACGTGGTTATACCGTGCATGCCACTGTTCAAGATCTTGGAAATTGGAAGGAGACTAAACATCTAGAAGCAATGGAAGGAGCGAAAGAGAGGCTCAAGTTATTTAAAATGGATTTAATGGATTATCAGTCTATCCAAGATGCCATTGATGGGTGTTCTGGTGTCTTTCATTTAGCCATGCCTAAT
ACTATTGAGGCAGTGGAAGATCCTCAAAAGCAACTGCTGGATCCAGGCATTAAGGGCACACTGAACGTGCTGGAAGCAGCACACAAAGCCAAAGTGAGGCGTGTGGTATTGACCTCTTCGGTGTCTGCCATAATTCCCAACCCCAAATGGCCTGTAGGCAAGCCCTTGGACGAAAGCTGCTGGACAGATCTAGATTACTG
CAGAGAGAATGGAATTTGGTATACAGTTGCAAAAACATTGGCTGAAAAGGCAGCATGGGATTTTTCCAAGGAGAAGGGTTTGGATGTAGTTGCTATCAACCCAGGGACTGCTCTGGGACCAATATTGCCACCTGATATGAATGCCAGCATGGCCATGATTGTCAAACTCCTTCAAGGTAATAAAGAAGAATATCAAAATT
TTTTTATGGGCTGTGCAAATGTAAAGGATATTGCAAAAGGTCAAATATTACTTTATGAAACGCCTTCAGCCTCTGGGAGGCACCTTTGTGTCGAGTCTATAGCCCATTGGAGCGACTTTGCCGAATTGACAGCGAAACTATATCCTGAATATAATGTGCACAAGTTTACAACTGTCACACAACCTAACTTGGTACGTGTT
AAGAATGCACCAAAGAAATTGATTGACCTTGGGCTTCAATTCACATCCATGGAAGGGATAATCAAAGATTGTGTTTCCACACTAAGTGAGAAAGGATTTTTGGATGGATTGCCATAGAATAGGCAAATGCTTTTCTAAATAAGTTTTAAGTCATAAAACTATATATCTACATAACTAAGCATTTCTAGTAAGTTTTTGAG
TTTTAACGGATATATGATATTATCTTTTTATAATAATGAACATCAAGTTCCTTCT
Intron 3 GTGGGGTTTT ... TGGGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.33 | 5 | 0 | 7 |
| A2 | 60 | 2 | 1 | 3 |
| A3 | 52.94 | 8 | 1 | 9 |
| A4 | 50 | 8 | 0 | 8 |
| A5 | 75 | 2 | 2 | 6 |
| A6 | 50 | 16 | 1 | 16 |
| A7 | 50 | 7 | 2 | 7 |
| A8 | 36.36 | 7 | 0 | 4 |
| A9 | 61.29 | 12 | 5 | 19 |
| A10 | 48.65 | 19 | 0 | 18 |
>TRINITY_DN37643_c0_g1_i1 from sample A9 / Example spliced isoformCAGATTTGGGGGAGAGACTGTAAACAGAGGTCTGTGTGTGGATTTCAGCTAAAATGGGGGAGGTGGTGTGTGTGACTGGAGCCAGTGGATTCATTGGATCTTGGGTCGTTCGTTTGTTGTTGGAACGTGGTTATACCGTGCATGCCACTGTTCAAGATCTTGGAAATTGGAAGGAGACTAAACATCTAGAAGCAATGGAA
GGAGCGAAAGAGAGGCTCAAGTTATTTAAAATGGATTTAATGGATTATCAGTCTATCCAAGATGCCATTGATGGGTGTTCTGGTGTCTTTCATTTAGCCATGCCTAATACTATTGAGGCAGTGGAAGATCCTCAAAAGCAACTGCTGGATCCAGGCATTAAGGGCACACTGAACGTGCTGGAAGCAGCACACAAAGCCAA
AGTGAGGCGTGTGGTATTGACCTCTTCGGTGTCTGCCATAATTCCCAACCCCAAATGGCCTGTAGGCAAGCCCTTGGACGAAAGCTGCTGGACAGATCTAGATTACTGCAGAGAGAATGGAATTTGGTATACAGTTGCAAAAACATTGGCTGAAAAGGCAGCATGGGATTTTTCCAAGGAGAAGGGTTTGGATGTAGTTG
CTATCAACCCAGGGACTGCTCTGGGACCAATATTGCCACCTGATATGAATGCCAGCATGGCCATGATTGTCAAACTCCTTCAAGGTAATAAAGAAGAATATCAAAATTTTTTTATGGGCTGTGCAAATGTAAAGGATATTGCAAAAGGTCAAATATTACTTTATGAAACGCCTTCAGCCTCTGGGAGGCACCTTTGTGTC
GAGTCTATAGCCCATTGGAGCGACTTTGCCGAATTGACAGCGAAACTATATCCTGAATATAATGTGCACAAGTTTACAACTGTCACACAACCTAACTTGGTACGTGTTAAGAATGCACCAAAGAAATTGATTGACCTTGGGCTTCAATTCACATCCATGGAAGGGATAATCAAAGATTGTGTTTCCACACTAAGTGAGAA
AGGATTTTTGGATGGATTGCCATAGAATAGGCAAATGCTTTTCTAAATAAGTTTTAAGTCATAAAACTATATATCTACATAACTAAGCATTTCTAGTAAGTTTTTGAGTTTTAACGGATATATGATATTATCTTTTTATAATAATGAACATCAAGTTCCTTCT
>TRINITY_DN37643_c0_g1_i2 from sample A9 / Example unspliced isoform:CAGATTTGGGGGAGAGACTGTAAACAGgtggggttttcgtgataaggtaaagtatgctcgttattggtttagagtagatgtgtgcagcgattaaaactgaattcttttttgggttgcagAGGTCTGTGTGTGGATTTCAGCTAAAATGGGGGAGGTGGTGTGTGTGACTGGAGCCAGTGGATTCATTGGATCTTGGGTCG
TTCGTTTGTTGTTGGAACGTGGTTATACCGTGCATGCCACTGTTCAAGATCTTGGAAATTGGAAGGAGACTAAACATCTAGAAGCAATGGAAGGAGCGAAAGAGAGGCTCAAGTTATTTAAAATGGATTTAATGGATTATCAGTCTATCCAAGATGCCATTGATGGGTGTTCTGGTGTCTTTCATTTAGCCATGCCTAAT
ACTATTGAGGCAGTGGAAGATCCTCAAAAGCAACTGCTGGATCCAGGCATTAAGGGCACACTGAACGTGCTGGAAGCAGCACACAAAGCCAAAGTGAGGCGTGTGGTATTGACCTCTTCGGTGTCTGCCATAATTCCCAACCCCAAATGGCCTGTAGGCAAGCCCTTGGACGAAAGCTGCTGGACAGATCTAGATTACTG
CAGAGAGAATGGAATTTGGTATACAGTTGCAAAAACATTGGCTGAAAAGGCAGCATGGGATTTTTCCAAGGAGAAGGGTTTGGATGTAGTTGCTATCAACCCAGGGACTGCTCTGGGACCAATATTGCCACCTGATATGAATGCCAGCATGGCCATGATTGTCAAACTCCTTCAAGGTAATAAAGAAGAATATCAAAATT
TTTTTATGGGCTGTGCAAATGTAAAGGATATTGCAAAAGGTCAAATATTACTTTATGAAACGCCTTCAGCCTCTGGGAGGCACCTTTGTGTCGAGTCTATAGCCCATTGGAGCGACTTTGCCGAATTGACAGCGAAACTATATCCTGAATATAATGTGCACAAGTTTACAACTGTCACACAACCTAACTTGGTACGTGTT
AAGAATGCACCAAAGAAATTGATTGACCTTGGGCTTCAATTCACATCCATGGAAGGGATAATCAAAGATTGTGTTTCCACACTAAGTGAGAAAGGATTTTTGGATGGATTGCCATAGAATAGGCAAATGCTTTTCTAAATAAGTTTTAAGTCATAAAACTATATATCTACATAACTAAGCATTTCTAGTAAGTTTTTGAG
TTTTAACGGATATATGATATTATCTTTTTATAATAATGAACATCAAGTTCCTTCT