NA ----> NA
Intron 1 GTGAATTTTC ... TTCCTGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.7 | 5 | 14 | 9 |
| A2 | 100 | 0 | 9 | 5 |
| A3 | 90 | 1 | 5 | 13 |
| A4 | 100 | 0 | 9 | 5 |
| A5 | 76.47 | 2 | 9 | 4 |
| A6 | 66.67 | 3 | 3 | 9 |
| A7 | 81.82 | 1 | 0 | 9 |
| A8 | 74.19 | 4 | 10 | 13 |
| A9 | 78.57 | 3 | 10 | 12 |
| A10 | 100 | 0 | 2 | 1 |
>TRINITY_DN48037_c0_g5_i3 from sample A7 / Example spliced isoformTTCATGTCGTTGACCACTCCAGTTTCCATGGCTAATGGGTTCCCATCATCTTGATCTTTCTCAATCAATATGCTGTGTATCTCTCCAACCATAAGTTTTGTTATTACCTTGCATGTGATAAAGGCTTCAAAGGCCCTAGTTTTCATGACCCGAGGGGGAAAATGTTTGCTTCTGATGAGTGGACTAGTCTTAGTGGTGCA
GCAAGGGTGATGGGAAGGAAATTTGCAAGAAAAAATTTGATATCTATTTTTGGTCTAGAGCAGCAAATATTGTCAAAGCATTGTGGAGAATGGATGGGGATAAGTTGGCCATTTGATCACGTCAAATATCATTTAAGGGCAACAAACAAGAAGAAAAAAATAAGTATCCACCTCTTTGGAAGATCGTTGGTAATTAATGG
AACAACCAACTTCGTTGGCCTAAACATGCCATTGTTTGTTTTCTAAACCTAAGGTACCATTACACAACCATCATTGGAAAAGATGAACTTGGGGAGGTCAAAGATGGATTCTGTACACTTGCCTGGAGGGCATGGTTCCTGATCAAAAAGTTCAGTTGGAAATACACACACAGGTCAATTTTGTCAGTAAAAGTGCAGGT
ACCTTTGGCAAGAACCTAATTTTTCTTGCAAGAGATGAAGACCAACCATTGAATTGGTGGGAATCATTTGGCAACCGAGGCCCTCAACTACAAAAGTTTGCAATTCAAATCTTGGAATAAAGGAGTATTATGTGCCATCGAGAAAAGTGAAAACTCTTGTAGAAGAAGCAAAACCTAAGACCTTGAATAGAGTGGAGGTG
CGAAGGATGGAATGAAGAGGTCCCTGGATGAAGGATTTCTCAAGTCGGCCTCAGCCACACCTTTGTTGATTAAAGATGATGTAGTCAAGGTTGAAGTTTTGGCTCTCAACTGCCCCTTATTTTGTCACTCAATCAATTTTTTTCTTTGAAGAAAAATACTTGGCCTGATAAATCTGAAGTTGAC
>TRINITY_DN48037_c0_g5_i7 from sample A7 / Example unspliced isoform:TTCATGTCGTTGACCACTCCAGTTTCCATGGCTAATGGGTTCCCATCATCTTGATCTTTCTCAATCAATATGCTGTGTATCTCTCCAACCATAAGTTTTGTTATTACCTTGCATGTGATAAAGGCTTCAAAGGCCCTAGTTTTCATGACCCGAGGGGGAAAATGTTTGCTTCTGATGAGTGGACTAGTCTTAGTGGTGCA
GCAAGGGTGATGGGAAGGAAATTTGCAAGAAAAAATTTGATATCTATTTTTGGTCTAGAGCAGCAAATATTGTCAAAGCATTGTGGAGAATGGATGGGGATAAGTTGGCCATTTGATCACGTCAAATATCATTTAAGGGCAACAAACAAGAAGAAAAAAATAAGTATCCACCTCTTTGGAAGATCGTTGGTAATTAATGG
AACAACCAACTTCGTTGGCCTAAACATGCCATTGTTTGTTTTCTAAACCTAAGGTACCATTACACAACCATCATTGGAAAAGATGAACTTGGGGAGGTCAAAGATGGATTCTGTACACTTGCCTGGAGGGCATGGTTCCTGATCAAAAAGTTCAGTTGGAAATACACACACAGGTCAATTTTGTCAGTAAAAGTGCAGGT
ACCTTTGGCAAGAACCTAATTTTTCTTGCAAGAGATGAAGACCAACCATTGAATTGGTGGGAATCATTTGGCAACCGAGGCCCTCAACTACAAAAGTTTGCAATTCAAATCTTGGAATAAAGGAGTATTATGTGCCATCGAGAAAAGTGAAAACTCTTGTAGAAGAAGCAAAACCTAAGACCTTGAATAGAGTGGAGGTG
CGAAGgtgaattttccaaaagaattatgtggacatcaagaccagggaagttagaagcctctacaaatcaacaatattcgcaaatttttattgatgactcgccttgtaaaaggattggtctcaaccaccttgtaattttttcctgaaagGATGGAATGAAGAGGTCCCTGGATGAAGGATTTCTCAAGTCGGCCTCAGCCA
CACCTTTGTTGATTAAAGATGATGTAGTCAAGGTTGAAGTTTTGGCTCTCAACTGCCCCTTATTTTGTCACTCAATCAATTTTTTTCTTTGAAGAAAAATACTTGGCCTGATAAATCTGAAGTTGAC
Intron 2 GTAAGCAATT ... TTTATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 67.37 | 7 | 15 | 14 |
| A2 | 68.51 | 6.5 | 9 | 19.5 |
| A3 | 50.9 | 4.3 | 4 | 5 |
| A4 | 64.49 | 6.5 | 12 | 11.5 |
| A5 | 58.73 | 2.3 | 1 | 5.5 |
| A6 | 33.33 | 2 | 2 | 0 |
| A7 | 20 | 2 | 1 | 0 |
| A8 | 26.87 | 4.8 | 3 | 0.5 |
| A9 | 7.14 | 2.5 | 0 | 0.5 |
| A10 | 16.7 | 5.8 | 0 | 2.5 |
>TRINITY_DN116175_c8_g1_i2 from sample A1 / Example spliced isoformCTCTCCAACCATAAGTTTTGTTATTACCTTGCATGTGATAAAGGCTTCAAAGGCCCTAGTTTTCATGACCCGAGGGGGAAAATGTTTGCTTCTGATGAGTGGACTAGTCTTAGTGGTGCAGCAAGGGTGATGGGAAGGAAATTTGCAAGAAAAAATTTGATATCTATTTTTGGTCTAGAGCAGCAAATATTGTCAAAGCA
TTGTGGAGAATGGATGGGGATAAGTTGGCCATTTGATCACGTCAAATATCATTTAAGGGCAACAAACAAGAAGAAAAAAATAAGTATCCACCTCTTTGGAAGATCGTTGGTAATTAATGGAACAACCAACTTCGTTGGCCTAAACATGCCATTGTTTGTTTTCTAAACCTAAGGTACCATTACACAACCATCATTGGAAA
AGATGAACTTGGGGAGGTCAAAGATGGATTCTGTACACTTGCCTGGAGGGCATGGTTCCTGATCAAAAAGTTCAGTTGGAAATACACACACAGGTCAATTTTGTCAGTAAAAGTGCAGGTACCTTTGGCAAGAACCTAATTTTTCTTGCAAGAGATGAAGACCAACCATTGAATTGGTGGGAATCATTTGGCAACCGAGG
CCCTCAACTACAAAAGTTTGCAATTCAAATCTTGGGTATGCCAAACACGTACATGAGATAAACCTCTAGTATGTCAAATCTGATTAGTATGTCAAATCTGATTTCTTATGTTAAAGTCCTCTATTTCACCATCTCAAAATCATAATCAAATTAAAAAAAATAGCAC
>TRINITY_DN116175_c8_g1_i1 from sample A1 / Example unspliced isoform:CTCTCCAACCATAAGTTTTGTTATTACCTTGCATGTGATAAAGGCTTCAAAGGCCCTAGTTTTCATGACCCGAGGGGGAAAATGTTTGCTTCTGATGAGTGGACTAGTCTTAGTGGTGCAGCAAGGGTGATGGGAAGGAAATTTGCAAGAAAAAATTTGATATCTATTTTTGGTCTAGAGCAGCAAATATTGTCAAAGCA
TTGTGGAGAATGGATGGGGATAAGTTGGCCATTTGATCACGTCAAATATCATTTAAGGGCAACAAACAAGAAGAAAAAAATAAGTATCCACCTCTTTGGAAGATCGTTGGTAATTAATGGAACAACCAACTTCGTTGGCCTAAACATGCCATTGTTTGTTTTCTAAACCTAAGGTACCATTACACAACCATCATTGGAAA
AGATGAACTTGGGGAGGTCAAAGATGGATTCTGTACACTTGCCTGGAGGGCATGGTTCCTGATCAAAAAGTTCAGTTGGAAATACACACACAGGTCAATTTTGTCAGTAAAAGTGCAGGTACCTTTGGCAAGAACCTAATTTTTCTTGCAAGAGATGAAGACCAACCATgtaagcaattccaaagtatttaagctcaagt
attcattcttctaggctttgaacatttctagacaaagttaaaaactaatttcttgaattttatgactttgtctttgactcttatgatttattgcagTGAATTGGTGGGAATCATTTGGCAACCGAGGCCCTCAACTACAAAAGTTTGCAATTCAAATCTTGGGTATGTCAAACATGCACATGAGATAAATCTCTAGTATG
TCAAATCTGATTTCTTTGGGTGGTCATTGCTTTTGGG