NA ----> NA
Intron 1 GTTCGGCTTT ... CATTGGTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | 41.66 | 1 | 1 | 0.5 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 77.78 | 1 | 4 | 3 |
| A7 | 88.24 | 1 | 8 | 7 |
| A8 | 66.56 | 3 | 6 | 6 |
| A9 | 67 | 5 | 10.5 | 10 |
| A10 | 55 | 2 | 4.5 | 0.5 |
>TRINITY_DN42058_c1_g1_i5 from sample A8 / Example spliced isoformTATTTATTCGTTGAAGAGAGGCTATTTATTCGTTGAAGGGAGGCTATATATTTCAAATCTTACCCTCTTGTTCACATTTTCGTCCTCCTCGTCTACCTATTCTCTATTTTGTATGTCGCTCTGGTTGTATGTTCGAGTCTGTGTGTGGTTTTGGTTTGATTCGGAGTCTGTATGTGGTTTGAGAACGATTCTGAGTTGGA
GCCTGTGTGCCGTTTGAGAACGATTCTGGATGTAATGTGGTTTGTGTCTGGGTCTGTGTGTTGTTCAAGACCGAGTTTGTGTCTGAGTCTGTGTTTGTGTATGATAGAGGAGGAGATGGACTAACTTTCAGGCAACCGAATCCTCCGCTGGAGCAAAGACAGCTGAACTACTCAACGATCACTGCTTCTAACGAAGTCAA
GTTTTTCGATTTGATTCAGTCTTTCCAAACCCTTCTTCTTCAGTGAATTTGAGCCACAGTTTGAGTCTGTGTGTGGTTTGAGTTAGACGAGGAGGATGGACTGAATTTGAGGAGTCTGAATCATCAGCTGGAGCAAACAACTTCGAAGGAAAGGCACCCAAACTCCTCAACCATCACTGCTCTTTGGATGGTACATTTTG
TTATCTTTTGCTTTGCCATCTACTACTCTCAGAATACCTAGTTCCTTTTTTAAAATTCTCTCATCTGTTCTTTTCAATCCATCAATTTGATGGAAAATATTTTAGGTTGGGCTCTGTTTTGTTCAGATGCAAACTGCCATGGGTTGGAATACGAGCCTTCAATGTGATTGAGGGCTTCCAAACCCTTCTTCAACTAATTT
GAGCAATTTAATATGTGCCTTCATGTGCCTTATCTTTCATTAACGGCAATTTAATATGTATGTG
>TRINITY_DN42058_c1_g1_i4 from sample A8 / Example unspliced isoform:TATTTATTCGTTGAAGAGAGGCTATTTATTCGTTGAAGGGAGGCTATATATTTCAAATCTTACCCTCTTGTTCACATTTTCGTCCTCCTCGTCTACCTATTCTCTATTTTGTATGTCGCTCTGGTTGTATGTTCGAGTCTGTGTGTGGTTTTGGTTTGATTCGGAGTCTGTATGTGGTTTGAGAACGATTCTGAGTTGGA
GCCTGTGTGCCGTTTGAGAACGATTCTGGATGTAATGTGGTTTGTGTCTGGGTCTGTGTGTTGTTCAAGACCGAGTTTGTGTCTGAGTCTGTGTTTGTGTATGATAGAGGAGGAGATGGACTAACTTTCAGGCAACCGAATCCTCCGCTGGAGCAAAGACAGCTGAACTACTCAACGATCACTGCTTCTAACGgttcggc
tttgttctgttcaaatgcaacctgccattggttagAAGTCAAGTTTTTCGATTTGATTCAGTCTTTCCAAACCCTTCTTCTTCAGTGAATTTGAGCCACAGGTATGTATGGCACTGACTTTTCTTCCCTTTACCTTACAAATGTAAAATCTTGATGACATTCCTCTGGCCATGGCCGCAGGGATCCACC
Intron 2 GTACATTTTG ... AATATTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 0 | 2 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 50 | 1 | 1 | 1 |
| A7 | 63.64 | 2 | 3 | 4 |
| A8 | 91.3 | 1 | 10 | 11 |
| A9 | 77.14 | 4 | 11 | 16 |
| A10 | 77.78 | 1 | 5 | 2 |
>TRINITY_DN37843_c0_g2_i1 from sample A9 / Example spliced isoformCTTTGGTTGTATGTCTGAGTCTGTGGTTGGATGTATGTGGCTGTGTGTAGTTTGAGTCTGTGTGTGGTTTGAGTTAGACGAGGAGGATGGACTGAATTTGAGGAGTCTGAATCATCAGCTGGAGCAAACAACTTCGAAGGAAAGGCACCCAAACTCCTCAACCATCACTGCTCTTTGGATGGTTGGGCTCTGTTTTGTTC
AGATGCAAACTGCCATGGGTTGGAATACGAGCCTTCAATGTGATTGAGGGCTTCCAAACCCTTCTTCAACTAATTTGAGC
>TRINITY_DN37843_c0_g2_i3 from sample A9 / Example unspliced isoform:GAAAGGAAAAAGGCAGGGAACTATTTATTCGTTGAGGAGAGGCTATTTATTCGTTGAAGGGAGGCTATATATTTCAAATCTTACCCTCTTGTTCACATTTTCGTCCTCCTCGTCTACCTATTCTCTATTTTGTATGTCGCTCTGGTTGTATGTTCGAGTCTGTGTGTGGTTTTGGTTTGATTCGGAGTCTGTATGTGGTT
TGAGAACGATTCTGAGTTGGAGCCTGTGTGCCGTTTGAGAACGATTCTGGATGTAATGTGGTTTGTGTCTGGGTCTGTGTGTTGTTCAAGACCGAGTTTGTGTCTGAGTCTGTGTTTGTGTATGATAGAGGAGGAGATGGACTAACTTTCAGGCAACCGAATCCTCCGCTGGAGCAAAGACAGCTGAACTACTCAACGAT
CACTGCTTCTAACGGTTCGGCTTTGTTCTGTTCAAATGCAACCTGCCATTGGTTAGAAGTCAAGTTTTTCGATTTGATTCAGTCTTTCCAAACCCTTCTTCTTCAGTGAATTTGAGCCACAGTTTGAGTCTGTGTGTGGTTTGAGTTAGACGAGGAGGATGGACTGAATTTGAGGAGTCTGAATCATCAGCTGGAGCAAA
CAACTTCGAAGGAAAGGCACCCAAACTCCTCAACCATCACTGCTCTTTGGATGgtacattttgttatcttttgctttgccatctactactctcagaatacctagttccttttttaaaattctctcatctgttcttttcaatccatcaatttgatggaaaatattttagGTTGGGCTCTGTTTTGTTCAGATGCAAACTGC
CATGGGTTGGAATACGAGCCTTCAATGTGATTGAGGGCTTCCAAACCCTTCTTCAACTAATTTGAGCAATTTAATATGTGCCTTCATGTGCCTTATCTTTCATTAACGGCAATTTAATATGTATGTGTTATCTTTCTTTTAACTCGTAG