sp|Q6L4S0|DDB1_ORYSJ ----> DNA damage-binding protein 1

Intron 1 GTAAATTTCT ... ATATTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	-1	0	0	0
A2	46.67	4	4	3
A3	50	1	2	0
A4	33.33	1	0	1
A5	100	0	1	0
A6	29.41	6	3	2
A7	39.39	10	4	9
A8	35.71	9	7	3
A9	44.44	5	4	4
A10	25	3	1	1

>TRINITY_DN44849_c0_g1_i4 from sample A8 / Example spliced isoform

CCGATATCCTCAGGGATGAGTCGCTGGAAACATGATCGAAAGACATTCCATTCGACTTGGACGGTTTTGGACGAGCTGGAAAATTCTTGAGTCCAGTGATCTCAAGCTTTTGGAGAGGTTGGAATTCAATCACTCTCAGTTTGAATGCTTACACAAATCCTTTCACGATGGATCTTGGAGATTTAAAGACGAGTCTTGGT
TATTGTATTGGTGAGGATTGAGAAATGGTACAAGGCCTCAATCAATGATATTTGTGACAGGCTTGTCAATATTTATGACTTTAACACTAGCGCCCAAGTGGAATATCTGATTGTCACATTAGAAAAAATTTCAGACTTAGTTGGAGATATGCTTGTGATGGCAACATAGCAATGACTTTAAAACTTTGTACTTGGACAAC
AGATCTGGTAATCGACAACTTACAAACCTGTTGAGGTTGTCTTTAATGACCACTAATGTCAACAGAGCCATCCCATTTCTTATTCACATCAGTGTTTACTTTATTCATATTTCAATTACAATTAATATGTTTTAAGAAACCAGACTGCTTCTATCTTCTCCAATGTCATTGGCTAGAAACTGACATTAGAGCCATGTCAA
CAGAGCCATCCCATTTCTTATTCACATCAGTGTTTACTTTGTTCATATTTCAATTAGAATTAATATGTTTTAAGAAACCAGACTGCTTCTATCTTCTCCAATGTCATTGGCTAGAAACTGACATTAGAGCCATGTCAACAGAGCCATCCCATTT

>TRINITY_DN44849_c0_g1_i1 from sample A8 / Example unspliced isoform:

GGACCTACTATCTTGCTGTATTGTTTTGTCTTGGGACTTTTTTGAAAGCTTTGATACCAATTTGATTGACGGGTATTAAACCTTCTTTGGCTAGATGATTGTTTTCAAATTTTCCTCGAACTATATAATGATTCCAATTTCAGTGATCTCAAGCTTTTGGAGAGGTTGGAATTCAATCACTCTCAGTTTGAATGCTTACA
CAAATCCTTTCACGATGGATCTTGGAGATTTAAAGACGAGTCTTGGTTATTGTATTGGTGAGGATTGAGAAATGgtaaatttctcattcaatatctagattcatatttcaattgcaggctaggctacatcaaaatgcaactattaaggaattcatacaaatgactcaattatagcattggattcgttagcttcacaagct
ttcttgaaatattttcagGTACAAGGCCTCAATCAATGATATTTGTGACAGGCTTGTCAATATTTATGACTTTAACACTAGCGCCCAAGTGGAATATCTGATTGTCACATTAGAAAAAATTTCAGACTTAGTTGGAGATATGCTTGTGATGGCAACATAGCAATGACTTTAAAACTTTGTACTTGGACAACAGATCTGGT
AATCGACAACTTACAAACCTGTTGAGGTTGTCTTTAATGACCACTAATGTCAACAGAGCCATCCCATTTCTTATTCACATCAGTGTTTACTTTATTCATATTTCAATTACAATTAATATGTTTTAAGAAACCAGACTGCTTCTATCTTCTCCAATGTCATTGGCTAGAAACTGACATTAGAGCCATGTCAACAGAGCCAT
CCCATTTCTTATTCACATCAGTGTTTACTTTGTTCATATTTCAATTAGAATTAATATGTTTTAAGAAACCAGACTGCTTCTATCTTCTCCAATGTCATTGGCTAGAAACTGACATTAGAGCCATGTCAACAGAGCCATCCCATTT

Intron 2 GTGAGGATTG ... ATATTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	-1	0	0	0
A2	38.46	4	2	3
A3	100	0	2	0
A4	33.33	1	0	1
A5	40	3	4	0
A6	30.43	8	5	2
A7	33.33	14	5	9
A8	30.43	8	4	3
A9	33.33	8	4	4
A10	27.27	4	2	1

>TRINITY_DN44849_c0_g1_i5 from sample A8 / Example spliced isoform

CCGATATCCTCAGGGATGAGTCGCTGGAAACATGATCGAAAGACATTCCATTCGACTTGGACGGTTTTGGACGAGCTGGAAAATTCTTGAGTCCAGTGATCTCAAGCTTTTGGAGAGGTTGGAATTCAATCACTCTCAGTTTGAATGCTTACACAAATCCTTTCACGATGGATCTTGGAGATTTAAAGACGAGTCTTGGT
TATTGTATTGGTACAAGGCCTCAATCAATGATATTTGTGACAGGCTTGTCAATATTTATGACTTTAACACTAGCGCCCAAGTGGAATATCTGATTGTCACATTAGAAAAAATTTCAGACTTAGTTGGAGATATGCTTGTGATGGCAACATAGCAATGACTTTAAAACTTTGTACTTGGACAACAGATCTGGTAATCGACA
ACTTACAAACCTGTTGAGGTTGTCTTTAATGACCACTAATGTCAACAGAGCCATCCCATTTCTTATTCACATCAGTGTTTACTTTATTCATATTTCAATTACAATTAATATGTTTTAAGAAACCAGACTGCTTCTATCTTCTCCAATGTCATTGGCTAGAAACTGACATTAGAGCCATGTCAACAGAGCCATCCCATTTC
TTATTCACATCAGTGTTTACTTTGTTCATATTTCAATTAGAATTAATATGTTTTAAGAAACCAGACTGCTTCTATCTTCTCCAATGTCATTGGCTAGAAACTGACATTAGAGCCATGTCAACAGAGCCATCCCATTT

>TRINITY_DN44849_c0_g1_i1 from sample A8 / Example unspliced isoform:

GGACCTACTATCTTGCTGTATTGTTTTGTCTTGGGACTTTTTTGAAAGCTTTGATACCAATTTGATTGACGGGTATTAAACCTTCTTTGGCTAGATGATTGTTTTCAAATTTTCCTCGAACTATATAATGATTCCAATTTCAGTGATCTCAAGCTTTTGGAGAGGTTGGAATTCAATCACTCTCAGTTTGAATGCTTACA
CAAATCCTTTCACGATGGATCTTGGAGATTTAAAGACGAGTCTTGGTTATTGTATTGgtgaggattgagaaatggtaaatttctcattcaatatctagattcatatttcaattgcaggctaggctacatcaaaatgcaactattaaggaattcatacaaatgactcaattatagcattggattcgttagcttcacaagct
ttcttgaaatattttcagGTACAAGGCCTCAATCAATGATATTTGTGACAGGCTTGTCAATATTTATGACTTTAACACTAGCGCCCAAGTGGAATATCTGATTGTCACATTAGAAAAAATTTCAGACTTAGTTGGAGATATGCTTGTGATGGCAACATAGCAATGACTTTAAAACTTTGTACTTGGACAACAGATCTGGT
AATCGACAACTTACAAACCTGTTGAGGTTGTCTTTAATGACCACTAATGTCAACAGAGCCATCCCATTTCTTATTCACATCAGTGTTTACTTTATTCATATTTCAATTACAATTAATATGTTTTAAGAAACCAGACTGCTTCTATCTTCTCCAATGTCATTGGCTAGAAACTGACATTAGAGCCATGTCAACAGAGCCAT
CCCATTTCTTATTCACATCAGTGTTTACTTTGTTCATATTTCAATTAGAATTAATATGTTTTAAGAAACCAGACTGCTTCTATCTTCTCCAATGTCATTGGCTAGAAACTGACATTAGAGCCATGTCAACAGAGCCATCCCATTT