sp|O65278|ULP1B_ARATH ----> Putative ubiquitin-like-specific protease 1B
Intron 1 GTAAGTGCAT ... TTTGTTGCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 1 | 1 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 84.62 | 1 | 3 | 8 |
| A8 | 42.86 | 4 | 4 | 2 |
| A9 | 33.33 | 2 | 1 | 1 |
| A10 | 100 | 0 | 0 | 1 |
>TRINITY_DN44912_c0_g1_i4 from sample A7 / Example spliced isoformTGAAAATTTCCCGACATGTCACTTTTTCAATACATTTTTCTATACCTCGCTTGATAGGGATCTGAAAACAGAAAGCATAACATCAATTATGAGAAAGACTCGAAGGCTTCAGTACGAGTTAGTTAACTGTGATAAGATTTTTGTGCCCGTCAATGATAATGGGGATCATTGGGTAGTTGTTGTCATCGATATTCAACGGA
AGAAGATCCAGTATCTCGACTCCTTGTTAGGAGAAAATCGCAATGCTATGAAAGTAATAGCATGGTATATAAAGGAAGAAGCAAAGCAAAAGAGTAAAATAGATTTGGATCCTGAATCGTGGAAAATGGAATTTCCAAAGAATATTCCTACACAAAAAAATAATTATGATTGTGGAGTCTTTATGCTCAAGTATATTGAT
TTCCTCAGTCGCGGCCTGCCTCTGAATTTCCAGCAGGTGAATGTTTAAGCTCCGATAGTTTAAATTTCACAAGGATATTTGATTTCAGAAATTTGTTATTTTTCATGACAATTGATTCACTGCCATCACCTGTGAACAGAGTCATATTCCACTTTTCCGAGAAAAGTTGGTGTTAGAAATTCTAAATATACCTGGATGTT
CCAATAGAATTAAGCTAGAGTGAAGGACTCTGTACTTCATCTTTGTAAGCTAACTTTTCCAAGCTTTAGCC
>TRINITY_DN44912_c0_g1_i2 from sample A7 / Example unspliced isoform:AAGGAAGATCTGCTCCATAAGTGTGCAAGAGAGTAGCTGCAGCCGGAGGAAGACTTATATTTCGGGTTCTATCTTATCTTGTCTTTGTATCTTCTATTTTTGGAGCATCTTGTGAAGAGGGCAGGAGAGGGAAATGAATTATTGGGATGGCTGGAGAGAATCCCAAATTTGAAGACGGCACACGGAACAGCAAGCTTTCA
ATTGAAGGCCTACTTGAGCCTCTTAATGAGGCGGAGAAGGTTACTGTTCAATCTGCACTATGGAGAAAAAACAGATTTTTGTGCCCGTCAATGATAATGGGGATCATTGGGTAGTTGTTGTCATCGATATTCAACGGAAGAAGATCCAGTATCTCGACTCCTTGTTAGGAGAAAATCGCAATGCTATGAAAGTAATAgta
agtgcatgctgaaacttccctggatctcatcacaatgccaaatctcatgtaaaagatggggtaaatactgtgaaaattcagacttctccatgggcgataatacatatcaagacaatttcctttgttgcagGCATGGTATATAAAGGAAGAAGCAAAGCAAAAGAGTAAAATAGATTTGGATCCTGAATCGTGGAAAATGG
AATTTCCAAAGAATATTCCTACACAAAAAAATAAGTAAGATATCAGAACAAATCCTTCCCTGCATTCTTTTTGTACTAAATTACTAATATCTCTTCTCCTCTTCAATCATAAAAGAACCGGTTAAAATCCTAACACAAGTGGGATAATTATTCTACTGGACAGTTATGATTGTGGAGTCTTTATG
Intron 2 GTAAGATATC ... TACTGGACAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 1 | 0 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 0 | 4 | 0 | 0 |
| A7 | 85.71 | 1 | 6 | 1 |
| A8 | 100 | 0 | 3 | 0 |
| A9 | 20 | 4 | 1 | 0 |
| A10 | 50 | 2 | 2 | 0 |
>TRINITY_DN44912_c0_g1_i4 from sample A7 / Example spliced isoformTGAAAATTTCCCGACATGTCACTTTTTCAATACATTTTTCTATACCTCGCTTGATAGGGATCTGAAAACAGAAAGCATAACATCAATTATGAGAAAGACTCGAAGGCTTCAGTACGAGTTAGTTAACTGTGATAAGATTTTTGTGCCCGTCAATGATAATGGGGATCATTGGGTAGTTGTTGTCATCGATATTCAACGGA
AGAAGATCCAGTATCTCGACTCCTTGTTAGGAGAAAATCGCAATGCTATGAAAGTAATAGCATGGTATATAAAGGAAGAAGCAAAGCAAAAGAGTAAAATAGATTTGGATCCTGAATCGTGGAAAATGGAATTTCCAAAGAATATTCCTACACAAAAAAATAATTATGATTGTGGAGTCTTTATGCTCAAGTATATTGAT
TTCCTCAGTCGCGGCCTGCCTCTGAATTTCCAGCAGGTGAATGTTTAAGCTCCGATAGTTTAAATTTCACAAGGATATTTGATTTCAGAAATTTGTTATTTTTCATGACAATTGATTCACTGCCATCACCTGTGAACAGAGTCATATTCCACTTTTCCGAGAAAAGTTGGTGTTAGAAATTCTAAATATACCTGGATGTT
CCAATAGAATTAAGCTAGAGTGAAGGACTCTGTACTTCATCTTTGTAAGCTAACTTTTCCAAGCTTTAGCC
>TRINITY_DN44912_c0_g1_i2 from sample A7 / Example unspliced isoform:AAGGAAGATCTGCTCCATAAGTGTGCAAGAGAGTAGCTGCAGCCGGAGGAAGACTTATATTTCGGGTTCTATCTTATCTTGTCTTTGTATCTTCTATTTTTGGAGCATCTTGTGAAGAGGGCAGGAGAGGGAAATGAATTATTGGGATGGCTGGAGAGAATCCCAAATTTGAAGACGGCACACGGAACAGCAAGCTTTCA
ATTGAAGGCCTACTTGAGCCTCTTAATGAGGCGGAGAAGGTTACTGTTCAATCTGCACTATGGAGAAAAAACAGATTTTTGTGCCCGTCAATGATAATGGGGATCATTGGGTAGTTGTTGTCATCGATATTCAACGGAAGAAGATCCAGTATCTCGACTCCTTGTTAGGAGAAAATCGCAATGCTATGAAAGTAATAGTA
AGTGCATGCTGAAACTTCCCTGGATCTCATCACAATGCCAAATCTCATGTAAAAGATGGGGTAAATACTGTGAAAATTCAGACTTCTCCATGGGCGATAATACATATCAAGACAATTTCCTTTGTTGCAGGCATGGTATATAAAGGAAGAAGCAAAGCAAAAGAGTAAAATAGATTTGGATCCTGAATCGTGGAAAATGG
AATTTCCAAAGAATATTCCTACACAAAAAAATAAgtaagatatcagaacaaatccttccctgcattctttttgtactaaattactaatatctcttctcctcttcaatcataaaagaaccggttaaaatcctaacacaagtgggataattattctactggacagTTATGATTGTGGAGTCTTTATG
Intron 3 GTTCTCTGTC ... TGCTGACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 0 | 2 |
| A2 | 20 | 2 | 1 | 0 |
| A3 | 100 | 0 | 6 | 0 |
| A4 | 100 | 0 | 0 | 1 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 37.64 | 10 | 8 | 4 |
| A7 | 16.67 | 5 | 2 | 0 |
| A8 | 11.11 | 4 | 1 | 0 |
| A9 | 40.02 | 16.5 | 14 | 8 |
| A10 | 55.56 | 2 | 5 | 0 |
>TRINITY_DN41459_c12_g1_i1 from sample A9 / Example spliced isoformGGAAGATCTGCTCCATAAGTGTGCAAGAGAGTAGCTGCAGCCGGAGGAAGACTTATATTTCGGGTTCTATCTTATCTTGTCTTTGTATCTTCTATTTTTGGAGCATCTTGTGAAGAGGGCAGGAGAGGGAAATGAATTATTGGGATGGCTGGAGAGAATCCCAAATTTGAAGACGGCACACGGAACAGCAAGCTTTCAAT
TGAAGGCCTACTTGAGCCTCTTAATGAGGCGGAGAAGGTTACTGTTCAATCTGCACTATGGAGAAAAAACAGAGAAGTGGTGCTTATAAAACATCCCAATATCAGTGAAAGCATTACAGGAGGTCTATTGCAATGCCTTAGGCCAAATCAGTGGCTGTCTGGTGATGTAAGCAGAATTAAAAAAGCAATAGAAAAGATCC
AAACAGTGTATAATATTATGATTCATTTATTTCAATTTTTGTATAATATATGTTTCCAATCTCAAATACATACTTATCAAAAAGTTCTTACGTATTAATTTCACATTCAGAATTGCAGACATCTCC
>TRINITY_DN41459_c12_g1_i5 from sample A9 / Example unspliced isoform:GGAAGATCTGCTCCATAAGTGTGCAAGAGAGTAGCTGCAGCCGGAGGAAGACTTATATTTCGGGTTCTATCTTATCTTGTCTTTGTATCTTCTATTTTTGGAGCATCTTGTGAAGAGGGCAGGAGAGGGAAATGAATTATTGGGATGGCTGGAGAGAATCCCAAATTTGAAGACGGCACACGGAACAGCAAGCTTTCAAT
TGAAGGCCTACTTGAGCCTCTTAATGAGGCGGAGAAGGTTACTGTTCAATCTGCACTATGGAGAAAAAACAGgttctctgtctgaccctgtataattgtaacatcaatgtcaatcagaatcatataaatattttgattgtaaattggcccagaaaattgtgaacttattatagcatcgtaatgttcctttcaaaggatac
tatttaatttagatagatctaacatgttcctaagcttctggatttttttgctgaccagAGAAGTGGTGCTTATAAAACATCCCAATATCAGTGAAAGCATTACAGGAGGTCTATTGCAATGCCTTAGGCCAAATCAGTGGCTGTCTGGTGATGTAAGCAGAATTAAAAAAGCAATAGAAAAGATCCAAACAGTGTATAAT
ATTATGATTCATTTATTTCAATTTTTGTATAATATATGTTTCCAATCTCAAATACATACTTATCAAAAAGTTCTTACGTATTAATTTCACATTCAGAATTGCAGACATCTCC