NA ----> NA
Intron 1 GTATCGCTCC ... TTAGTTAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 2 | 1 | 2 |
| A2 | 40 | 12 | 1 | 8 |
| A3 | 22.22 | 7 | 0 | 2 |
| A4 | 35.71 | 9 | 0 | 5 |
| A5 | 38.46 | 8 | 5 | 5 |
| A6 | 40 | 3 | 0 | 2 |
| A7 | 13.33 | 13 | 2 | 2 |
| A8 | 50 | 1 | 0 | 1 |
| A9 | 0 | 1 | 0 | 0 |
| A10 | 33.33 | 2 | 0 | 1 |
>TRINITY_DN42598_c1_g1_i2 from sample A9 / Example spliced isoformAAATTGCAGACTTTGACTGTACAATCCGATTCAGCAACATCGAAAACCCCTTCTCCATTGAGATATTGTGCAATGAATGCATCTCATGCCAGCAATTTCATCAAATGAAAAATATTCTGCTGGATATCCGTCCAAAATTGCCAGTTAATGGAAGATGTAGTATACAAAACCGGCATACATTTGGCAAAAGAGAGTTTTCT
TGCTTTTGGAGCTCTGGCAACTGTGGACAGACAGGTGACAGAGCATTATTTTATCTTTCTTCCACTCTTTTCCCATTGCAACGGAAGAAAGCTCATCAGCTGCACAAAGTAGAACACCCATTTTGAATCATAAACTCCCCACAACAGTGCCAAAAGAATCCCAAAACAAAGAATGCCAAGAAGCAAAGAAGGCTTTTGAA
GCTAGGTTATGGGAAACTGTAAAATGCACTCAGTCATAAAGCGAAGGAACGAGTGGGACAACTGGTTCAAAGATTTGGTTTTGCTCTTACTGTAAGATCCAGCAGTCAGGGATTGTAGCAAGAGTTCAATGGCATTTACTTGGAATGGAGAAAAATGAACAAATCTGTTTATGCACCAACGTGCCTATTACAGAGAAAAC
ATCAAGACTAAAACAATTTCATGAACTTGAAAAGTTGAGACAGGTTGCTGAAGGTTCAATGCAAACCAATAACAATCCTACTAGATCGATACCTGGTGGTCCACAAACTTCTTCTAGACTTCACACTTCTGTTTCCCAGCTTGACAAACTATGGGATATAAAAGGGAGGGGAAATCTTGATGCTTCTGTTGGGCTGTTTT
TTTTTTTGCAAATGGCATAGCTTTTAATGTTTGTAGGTCTCCTTATTGGAAGGAGATAGTCAGAGATCTAGTTAACATTGCCCCTAAAGGTTACAAACCTCCCAGCTATGAAAATATGAGGACAACGGTGTTGTTTGAAGAGAGGGCTCAGATTGAAGCTAAACTTCATGATATTAAAGATAGCTGGAAGGACTCCGGAG
TCTCCATTTTTTCAGATGGTTGGACAGATGTCAATCATCGTCCTCTTATCAATATTTTGGTTTCTAGCCTGAAATGAGTTATGTTCTTAAAATGCCATGATACTAGAGGGAAAACAAAAGATGGTCCATATTTGATGGGTCTCTTTAAAGAGGTAGTAGATGAGGTTGGAAGAGAAAATGTGGTCCAAATTGTTAGAAAT
AGTGCCTCAAACAATGTGCTTGCTGGGGGTTTAATTGAGGATGAATACCCAACAATTTTTTGGACTCCTTGTTCCGTGCATTGCATCAACCTCCTCAAAGATATCAACAACATTGCATGGGTCAGCAAAACTTTGTGAAGCAAAGATGCTACAGATTTTTATCATTAATCATGCAACATCCATAGCAATTTATAGGAAAC
ATTCCAATCTGCAACTTCTTCAATGTGTCGAGACTAGATTTGCATCTGCATTCATTATGTTACAACACTTCATCAAAGTGCATCAATCTTTGAGGGAGATGGTGGTATCAATAGATTGGCAGAGGTGGAAGGGTTCTCATGTTGGAGATGGTCCATGAGTTGAGGACATTATTATTGGCCGTTCTTCAGAGAGTTTTTGG
AGGAGAGTGAAGGATATTGTCACCCTTATCACACCTATTGTTTCCACCCTTTGCATGTTTGATTATGATCAACCATGCTTAGGAGATGCGTTTGAGAGTATGGATCAAATGAGAGAGAAGCTTTGTGACATAATGGAAGATGCAAATTCTAGTATCATTAGGGACACCTGGAATGAGTTGTGGGATCTTAGCCTTACAAG
GAGAAAAATGCTTCAAAGTCCTCTTCATTCAATTGCATTTCTCCTCAACCCCAAATGGTTTCACAAGAAACCATCTTCAGATGTAGAGGTGATGCAGATTCAGAACACCTTTATAAGTAGATGTTATGATCGTGATGATTGCACTGCTTTACGGCTTGAGTTGGGAAAGTTCTTGAGATCTGAGGGACACTTTGCAAATG
AAGATTGTGCATATAACAAAGAAAAACTTGGACCCATAGATTTTGGATGCAATATGGTACAGGGACTCCCTTGCTTCACAAGTTGGCTATTTGTTTGCTTTCACAGGTGACTAGTTCATCTGCATGTGGGAGAAATTTGAGTGAATATGCTTTTATTCATTTGGCAAAGAGAAATCGATTAGGGATACAAAAGGCACAAG
ATTTGGTGTTTGTACATTCTACACCTGATATCTCGACAACAACTAGAGTACCAAACAGGATCCACTAGGATGTGGGATTATGGTGGTTCACAAGATGATGGAGATGATGATCTTCCACTTGAGGTGTTTCAAGTTTCAACTCAACGTTGAAGACATGCTAGAGAACACCAGGCATCATGTTGACCAAAGTAGTGGCTCTG
TAATTGGCTTAAGCTCAACAGCCATTATAGTGAATGAGCTGGACCATCTAAATTATTAGGTTTATTTGTATTTTGGCATTATGCATAGAACTTGCTAGAAGGAACTTTTGAGATGTACCTTCAATCACAAGAATACATGTAGTTATTAATACTGTAAATCTTTTATTCTCATAAGTTTTTGTTTCTTTTTTGTCATATGA
GCAATTGGCTAAAAGTTCATACTTTCAATGTATGGACAAAGAAAATATATAATTTTTTTCCTTTACTAATTTCTTATGACAGAATTTGTTCATTACAGTTTCACCTATGTGATGAATTTTGATGATGAATGCTTTATTTTAATTAAATTTATCAAAGAAATAAAAACCGGCACACCAAAGGGTGA
>TRINITY_DN42598_c1_g1_i1 from sample A9 / Example unspliced isoform:AAATTGCAGACTTTGACTGTACAATCCGATTCAGCAACATCGAAAACCCCTTCTCCATTGAGATATTGTGCAATGAATGCATCTCATGCCAGCAATTTCATCAAATGAAAAATATTCTGCTGGATATCCGTCCAAAATTGCCAGTTAATGGAAGATGTAGTATACAAAACCGGCATACATTTGGCAAAAGAGAGTTTTCT
TGATTTTGGATCTCTGGAAACTGTGGACAGACAGGTGACAGgtatcgctccatcacaccatacagcttgttatttagttagagAGCATTATTTTATCTTTCTTCCACTCTTTTCCCATTGCAACGGAAGAAAGCTCATCAGCTGCACAAAGTAGAACACCCATTTTGAATCATAAACTCCCCACAACAGTGCCAAAAGAA
TCCCAAAACAAAGAATGCCAAGAAGCAAAGAAGGCTTTTGAAGCTAGGTTATGGGAAACTGTAAAATGCACTCAGTCATAAAGCGAAGGAACGAGTGGGACAACTGGTTCAAAGATTTGGTTTTGCTCTTACTGTAAGATCCAGCAGTCAGGGATTGTAGCAAGAGTTCAATGGCATTTACTTGGAATGGAGAAAAATGA
ACAAATCTGTTTATGCACCAACGTGCCTATTACAGAGAAAACATCAAGACTAAAACAATTTCATGAACTTGAAAAGTTGAGACAGGTTGCTGAAGGTTCAATGCAAACCAATAACAATCCTACTAGATCGATACCTGGTGGTCCACAAACTTCTTCTAGACTTCACACTTCTGTTTCCCAGCTTGACAAACTATGGGATA
TAAAAGGGAGGGGAAATCTTGATGCTTCTGTTGGGCTGTTTTTTTTTTTGCAAATGGCATAGCTTTTAATGTTTGTAGGTCTCCTTATTGGAAGGAGATAGTCAGAGATCTAGTTAACATTGCCCCTAAAGGTTACAAACCTCCCAGCTATGAAAATATGAGGACAACGGTGTTGTTTGAAGAGAGGGCTCAGATTGAAG
CTAAACTTCATGATATTAAAGATAGCTGGAAGGACTCCGGAGTCTCCATTTTTTCAGATGGTTGGACAGATGTCAATCATCGTCCTCTTATCAATATTTTGGTTTCTAGCCTGAAATGAGTTATGTTCTTAAAATGCCATGATACTAGAGGGAAAACAAAAGATGGTCCATATTTGATGGGTCTCTTTAAAGAGGTAGTA
GATGAGGTTGGAAGAGAAAATGTGGTCCAAATTGTTAGAAATAGTGCCTCAAACAATGTGCTTGCTGGGGGTTTAATTGAGGATGAATACCCAACAATTTTTTGGACTCCTTGTTCCGTGCATTGCATCAACCTCCTCAAAGATATCAACAACATTGCATGGGTCAGCAAAACTTTGTGAAGCAAAGATGCTACAGATTT
TTATCATTAATCATGCAACATCCATAGCAATTTATAGGAAACATTCCAATCTGCAACTTCTTCAATGTGTCGAGACTAGATTTGCATCTGCATTCATTATGTTACAACACTTCATCAAAGTGCATCAATCTTTGAGGGAGATGGTGGTATCAATAGATTGGCAGAGGTGGAAGGGTTCTCATGTTGGAGATGGTCCATGA
GTTGAGGACATTATTATTGGCCGTTCTTCAGAGAGTTTTTGGAGGAGAGTGAAGGATATTGTCACCCTTATCACACCTATTGTTTCCACCCTTTGCATGTTTGATTATGATCAACCATGCTTAGGAGATGCGTTTGAGAGTATGGATCAAATGAGAGAGAAGCTTTGTGACATAATGGAAGATGCAAATTCTAGTATCAT
TAGGGACACCTGGAATGAGTTGTGGGATCTTAGCCTTACAAGGAGAAAAATGCTTCAAAGTCCTCTTCATTCAATTGCATTTCTCCTCAACCCCAAATGGTTTCACAAGAAACCATCTTCAGATGTAGAGGTGATGCAGATTCAGAACACCTTTATAAGTAGATGTTATGATCGTGATGATTGCACTGCTTTACGGCTTG
AGTTGGGAAAGTTCTTGAGATCTGAGGGACACTTTGCAAATGAAGATTGTGCATATAACAAAGAAAAACTTGGACCCATAGATTTTGGATGCAATATGGTACAGGGACTCCCTTGCTTCACAAGTTGGCTATTTGTTTGCTTTCACAGGTGACTAGTTCATCTGCATGTGGGAGAAATTTGAGTGAATATGCTTTTATTC
ATTTGGCAAAGAGAAATCGATTAGGGATACAAAAGGCACAAGATTTGGTGTTTGTACATTCTACACCTGATATCTCGACAACAACTAGAGTACCAAACAGGATCCACTAGGATGTGGGATTATGGTGGTTCACAAGATGATGGAGATGATGATCTTCCACTTGAGGTGTTTCAAGTTTCAACTCAACGTTGAAGACATGC
TAGAGAACACCAGGCATCATGTTGACCAAAGTAGTGGCTCTGTAATTGGCTTAAGCTCAACAGCCATTATAGTGAATGAGCTGGACCATCTAAATTATTAGGTTTATTTGTATTTTGGCATTATGCATAGAACTTGCTAGAAGGAACTTTTGAGATGTACCTTCAATCACAAGAATACATGTAGTTATTAATACTGTAAA
TCTTTTATTCTCATAAGTTTTTGTTTCTTTTTTGTCATATGAGCAATTGGCTAAAAGTTCATACTTTCAATGTATGGACAAAGAAAATATATAATTTTTTTCCTTTACTAATTTCTTATGACAGAATTTGTTCATTACAGTTTCACCTATGTGATGAATTTTGATGATGAATGCTTTATTTTAATTAAATTTATCAAAGA
AATAAAAACCGGCACACCAAAGGGTGA