NA ----> NA
Intron 1 GCTATTTTCT ... CTTACTAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 76.74 | 10 | 32 | 34 |
| A2 | 72.88 | 8 | 20 | 23 |
| A3 | 79.71 | 7 | 29 | 26 |
| A4 | 57.14 | 15 | 23 | 17 |
| A5 | 81.82 | 1 | 4 | 5 |
| A6 | 64.71 | 6 | 9 | 13 |
| A7 | 76.15 | 13 | 40 | 43 |
| A8 | 71.03 | 21 | 43 | 60 |
| A9 | 72.15 | 11 | 27 | 30 |
| A10 | 73.33 | 12 | 29 | 37 |
>TRINITY_DN42498_c0_g2_i4 from sample A6 / Example spliced isoformCTGTGAGTCCTCGCGGAAAAGGAAAGGAAACAGGAATTTCCCTCCTTTTGCCACCTAGTCAGATTGCTCAAAACAACCAATCTCTTGCTTCTCTCAAGGCATCCCCTTTTGCAAGAACCAGTGGGAGTATTAAATACCAAAGTTGTGGTATAGGATGCAGCAAAGTGAATAGTAATAATGGAAGGGAAGAAGTGTCTTTA
TCTGAATGGGAAATCGAAGATAATAAAATAAATGTGGTGTGTGAGTCTGGGTTGACAACGGGTTCCTTTGGACATCATATGTCAGGAGAGGAACATCTTTACTGTGCAGGTATCTCTGTCAAGGATCTCACAGCATGTAGTGAAACACACTTCATGAATGCTGTTCATAATTGGACTCAGACAGGAGAAGAGGAGTTTTC
AGATACTTTTCAAGGTTTTCTTTTCAATAATCCCATAATCAAGAGCTGCTTCTCTGGGATTTTGGATGTAAACTGTGTCAAACTTCTTGAAGAAAATTTACAAGGGATGTTGCAATACTTGAGGATCAATGCAGACAACCTTATTCAGGCATCACTGTGGTATCAAGATTTGCAGAAGAAAACTGAGAATAATGCTATAC
TAGATTTGCAAAGCATCGAGTACGGGGATTACAATTTCATAGCTGGAGAGAGGCTTGAGAATATGGCAAAACTTGTTTGTCTTTCGAGGAATGAAAGGTCGAAAGAGAGCATGGTTATAGTAACAAAGAGATTGCAACAAAGTTCGCAAGAAAAAAAATGGCACCGGAGCAACAGAAGGCCTTTAATCTGCAAGTTTGTA
CTTCACCCGAGAAAAAAAAAGTAATGGTCATGAGGAGTGCAATAGATGTTTTACATGTGCGGGAGAGCCATCTATAGAGTTTTCTATCACAACTTATTGTATTTCTTTGCAGCAGTGGACATGTTTACTTTACAGAGGAAGCACAACATGCTCTTAAGTCCAAATGGAATTTTTTCTAGAATTAGGAGATATTGTAGAAC
ATATTAGTTATATAATCAAGATTTCCAAATTTTCCAACCTTCTCTGATTTTTGTAAACATCGTTCCTTTGCAGTTGAAATGCTTAAAATGATGGATTCACTGGGGATTATTGATTCTTGTATTTATTTTCTGTTGTCTCTAGCAGAGACACGGGTATGTAATAAGGTCTGGTGGATGTAATATTGATCTGCATGAGAGCA
TAATGTTGAGTCACTTGAATATTGAGCTTATAAAGGCGGCCAGCATGTTTTTCAATGAACCTGCATCTTCTCACCCACTCTCCAGGCAGAGGATTCAATCTTTGTATAGTGTGTTTGAGACAACCTTCAAGTTGCGAGAAGTTCTGGAAATTCAATTTTGTATTGAAATAGCATGGTTTTCAATGACTAATACTTAGGCA
GCTATTGGCGTTCGTTCTCACACGATGCTGAATTATTCTTTGGGTAGAGATTTGAAGCCTAATCATGTGGAATCAATTGAAAGACTTACAGTCATTCAATATAAGGTCCCATATCAAACTGTAATATTTGTTGCCACTCTAGTCGGAGCAAGATACATGTAATCCAACTCCTCATCTTGATTGGGTTATCTCTAAAGCAT
AGTTTGTGCTGTAATTACTCACATAACTGAATGCCTAATCATCAACAAAGCCAAAGGATATCACAAGGAATTAGATAGAATATTATTACACTGATAGGCATTTATATCTTAGAATTTTGGGGTGGACTACCATCTATGTTTTTCCTAGATTAAAGGAGGAAGGGACAAGTGTACTGCCCAGATTGA
>TRINITY_DN42498_c0_g2_i1 from sample A6 / Example unspliced isoform:CTGTGAGTCCTCGCGGAAAAGGAAAGGAAACAGGAATTTCCCTCCTTTTGCCACCTAGTCAGATTGCTCAAAACAACCAATCTCTTGCTTCTCTCAAGGCATCCCCTTTTGCAAGAACCAGTGGGAGTATTAAATACCAAAGTTGTGGTATAGGATGCAGCAAAGTGAATAGTAATAATGGAAGGGAAGAAGTGTCTTTA
TCTGAATGGGAAATCGAAGATAATAAAATAAATGTGGTGTGTGAGTCTGGGTTGACAACGGGTTCCTTTGGACATCATATGTCAGGAGAGGAACATCTTTACTGTGCAGGTATCTCTGTCAAGGATCTCACAGCATGTAGTGAAACACACTTCATGAATGCTGTTCATAATTGGACTCAGACAGGAGAAGAGGAGTTTTC
AGATACTTTTCAAGGTTTTCTTTTCAATAATCCCATAATCAAGAGCTGCTTCTCTGGGATTTTGGATGTAAACTGTGTCAAACTTCTTGAAGAAAATTTACAAGGGATGTTGCAATACTTGAGGATCAATGCAGACAACCTTATTCAGGCATCACTGTGGTATCAAGATTTGCAGAAGAAAACTGAGAATAATGCTATAC
TAGATTTGCAAAGCATCGAGTACGGGGATTACAATTTCATAGCTGGAGAGAGGCTTGAGAATATGGCAAAACTTGTTTGTCTTTCGAGGAATGAAAGGTCGAAAGAGgctattttctgtggccttgacaaagcacagagcaagaatgaatctttccatgaaaattcaggccagatgttagaagagaaaataaaaggacca
gaaacagaggaaaatagagttgttaattgtattcattatgatgatagcactgttgctgctgaaagacctatgagtgcaacatttcttcctgaagcaaaggacctattatcagctttgctttactttgttctccaatcagggaagaagtcaatagcacatgattggaagagtcataatgtaaacagattagctgatttaca
gataatcgggatggatagaaaagtacaagcattggaagcagaactaatggaagtaaaacaacaaaacaagaaactagagagcttactaaagAGCATGGTTATAGTAACAAAGAGATTGCAACAAAGTTCGCAAGAAAAAAAATGGCACCGGAGCAACAGAAGGCCTTTAATCTGCAAGTTTGTACTTCACCCGAGAAAAA
AAAAGTAATGGTCATGAGGAGTGCAATAGATGTTTTACATGTGCGGGAGAGCCATCTATAGAGTTTTCTATCACAACTTATTGTATTTCTTTGCAGCAGTGGACATGTTTACTTTACAGAGGAAGCACAACATGCTCTTAAGTCCAAATGGAATTTTTTCTAGAATTAGGAGATATTGTAGAACATATTAGTTATATAAT
CAAGATTTCCAAATTTTCCAACCTTCTCTGATTTTTGTAAACATCGTTCCTTTGCAGTTGAAATGCTTAAAATGATGGATTCACTGGGGATTATTGATTCTTGTATTTATTTTCTGTTGTCTCTAGCAGAGACACGGGTATGTAATAAGGTCTGGTGGATGTAATATTGATCTGCATGAGAGCATAATGTTGAGTCACTT
GAATATTGAGCTTATAAAGGCGGCCAGCATGTTTTTCAATGAACCTGCATCTTCTCACCCACTCTCCAGGCAGAGGATTCAATCTTTGTATAGTGTGTTTGAGACAACCTTCAAGTTGCGAGAAGTTCTGGAAATTCAATTTTGTATTGAAATAGCATGGTTTTCAATGACTAATACTTAGGCAGCTATTGGCGTTCGTT
CTCACACGATGCTGAATTATTCTTTGGGTAGAGATTTGAAGCCTAATCATGTGGAATCAATTGAAAGACTTACAGTCATTCAATATAAGGTCCCATATCAAACTGTAATATTTGTTGCCACTCTAGTCGGAGCAAGATACATGTAATCCAACTCCTCATCTTGATTGGGTTATCTCTAAAGCATAGTTTGTGCTGTAATT
ACTCACATAACTGAATGCCTAATCATCAACAAAGCCAAAGGATATCACAAGGAATTAGATAGAATATTATTACACTGATAGGCATTTATATCTTAGAATTTTGGGGTGGACTACCATCTATGTTTTTCCTAGATTAAAGGAGGAAGGGACAAGTGTACTGCCCAGATTGA