sp|Q93VD3|CIPKN_ARATH ----> CBL-interacting serine/threonine-protein kinase 23
Intron 1 GTACTAATAT ... TATTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.67 | 11 | 4 | 1 |
| A2 | 40 | 6 | 4 | 0 |
| A3 | 39.13 | 14 | 9 | 0 |
| A4 | 0 | 7 | 0 | 0 |
| A5 | 0 | 5 | 0 | 0 |
| A6 | 14.06 | 55 | 9 | 0 |
| A7 | 20.69 | 69 | 18 | 1 |
| A8 | 13.7 | 63 | 10 | 1 |
| A9 | 23.08 | 30 | 9 | 0 |
| A10 | 18.97 | 47 | 11 | 0 |
>TRINITY_DN48153_c0_g2_i1 from sample A7 / Example spliced isoformCAATGATAAAGGTTACGATGGTGCCACTGCAGACTTGTGGTCGTGTGGTGTTATCCTGTTCGTTTTGATGGCAGGTTACTTGCCTTTTGAGGACTCAAATCTGATGACACTATACAAAAAAATTCATAAAGCCGATTTTGCCTTTCCTTCATGGTTTTCTTCAACTGCAAAAAATCTGATTTCACGAATTTTGGATCCAA
ACCCAAAGACACGTATCACAGTACCTGAGATATTAGAGAATGAATGGTTTAAGAAAGGTTACACACCACCCAAGTTCCAAGAAGATGAGGATATAAATCTGGATGACGTGGATGCTGTTTTTAATGACTCAGAGGACCATCTTGTCACAGAGAAGAAAGAGACACATCCCGTGTTAATGAATGCGTTTGAACTTATCTCC
ACGTCACAAGGTCTCAACCTTGGCAATTTGTTTGAGAACCATATGGGCCTGGTTAAGCGAGAAACAAGGTTCACATCCAAACACCCCGCGAAAGAGATAATATCAAAAATTGAAGAAGCTGCCGGACCCCTTGGATTCAATGTTAAAAAGAAGAATTATAAGATGAAACTGCAAGCTGCCAGGACTGGAAGAAAGGGGCA
CTTGTCAGTAGCTACAGAGATATTTGAAGTAGCCCCTTCTCTTTTCATGGTTGAGCTTCGTAAAGCTGGAGGTGACACATTGGAATTTCAGAAGTTTTACAAGAATCTTTCAAGCGGGATCAAGGACATTGTCTGGAAGTCTGAAGTGATCATGAATGAGTAGAATGAAATAGATCTAAAATCCCATTAGCTAATTAAAT
ATGGAGATTTTACAGACTACTGGTATTGATTATATTTTTATTCTAATTGCTAGCTATATGGAAATTGCTTGATTAGTTTTGATTGGACATGCAGTGGACTTTTCTGCAGTTTGTGTATTAGCCCCACAAGGGTGGGAAACCAGATTAATATGGAGTGATGCTATTTGACTACAACTTTTTATATTTTCATACTAAACATG
TTATGAGATAAAGACAAGTACTGTTCTGTAGTTTTACTTTTTTATATTTTAATACTAAACATATTATGAG
>TRINITY_DN48153_c0_g2_i2 from sample A7 / Example unspliced isoform:CAATGATAAAGGTTACGATGGTGCCACTGCAGACTTGTGGTCGTGTGGTGTTATCCTGTTCGTTTTGATGGCAGGTTACTTGCCTTTTGAGGACTCAAATCTGATGACACTATACAAAAAAATTCATAAAGCCGATTTTGCCTTTCCTTCATGGTTTTCTTCAACTGCAAAAAATCTGATTTCACGAATTTTGGATCCAA
ACCCAAAGACACGTATCACAGTACCTGAGATATTAGAGAATGAATGGTTTAAGAAAGGTTACACACCACCCAAGTTCCAAGAAGATGAGGATATAAATCTGGATGACGTGGATGCTGTTTTTAATGACTCAGAGGACCATCTTGTCACAGAGAAGAAAGAGACACATCCCGTGTTAATGAATGCGTTTGAACTTATCTCC
ACGTCACAAGGTCTCAACCTTGGCAATTTGTTTGAGAACCATATGGGCCTGGTTAAGCGAGAAACAAGGTTCACATCCAAACACCCCGCGAAAGAGATAATATCAAAAATTGAAGAAGCTGCCGGACCCCTTGGATTCAATGTTAAAAAGAAGAATTATAAGATGAAACTGCAAGCTGCCAGGACTGGAAGAAAGGGGCA
CTTGTCAGTAGCTACAGAGgtactaatatagttgataaatatgtgctcattgcattcaaggactggatatcaattacaagtcctataactgtaaacatcggccctcaagtctgagcttgtctatttttcagATATTTGAAGTAGCCCCTTCT
Intron 2 GTAAGTGAAC ... CCATTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.42 | 31 | 0 | 7 |
| A2 | 16.67 | 10 | 0 | 2 |
| A3 | 3.7 | 26 | 0 | 1 |
| A4 | 10.34 | 26 | 0 | 3 |
| A5 | 0 | 9 | 0 | 0 |
| A6 | 6.85 | 68 | 1 | 5 |
| A7 | 9.09 | 80 | 0 | 8 |
| A8 | 10.68 | 92 | 0 | 11 |
| A9 | 14.86 | 63 | 0 | 11 |
| A10 | 12.94 | 74 | 0 | 11 |
>TRINITY_DN44686_c0_g2_i2 from sample A8 / Example spliced isoformTCACATGTTGGATGACACATTTTCGCATGCTCCCTTCCCCGGTGTAACCCGTAATTGTTCCTTGAAACGAACGAGGACAACGTCATTTGCATCTGCGGTGTACAACAGACGAAATATTGAGTTGGCTTTATGTAAAGTCTAGTGCCACTGTTATGTGTCAGAGATTAGTCTAGAGGCTGGGTATGAGTATCGGCGGAAGT
GGAGGTGGCTACGATTTGGGATTTTTCATTCATGGGATGAATGGGTCGTGTTTGGGTTCTGAATTCCTGGAAGGTACTATATGTATCCGTTGTTTAAAGGCATAATAGCATCCAGAAATATGTTGAGCTTGGCAATTAGAAGTTGTTATCTGTGTGTGTTTGGATTTGGACTCTGAGGAACCACTGAGAAGGTGCTGCTG
CAATTTATTTTCCAATTTTCGGTTTCATTATTAGCAAGATGAATGTCGTAAAGTCACAGGTCTGGCAGCCTTGTAATCGTAAGCGTTAGCATACACAGAGGGAGGGACAAAGATCTACAGGCGAAGCCATCCTGTCCTATCCAGTCCTTTGAGTGTAGATCCAGAGGAAATCAATCCAGTCAAAAGTGAGGTTGTTTTTT
CTTCTTTGCACTGTGTGTGTATTGAGAGGGAATGAGCTTACAGAGCGTAAGAACTCGTGTGGGTAAGTATGAGTTGGGACGCACCCTTGGTGAGGGTAACTTTGCCAAGGTCAAATTTGCTAAAAATATGGAGACTGGTGAGATTGTGGCCATCAAGATCCTGGATAAAGAAAAACTCCTCAAACACAAGATGGTGGAGC
AGATGAAGCGAGAAATATCTACCATGAAGTTGATCAAGCATCCAAATGTCATACGGTTACATGAGGTCATGGCTAGTAAAATAAAGATCTATATTGTACTCGAGTTTGTAACTGGAGGCGAGCTTTTTGATAAAATTGCCAATCAGGGAAGATTGAGAGAAGATGAAGCAAGAAGATACTTCCAGCAACTCATCAATGCT
GTGGACTACTGCCATAGTAGGGGTGTGTTCCATAGAGACTTGAAGCCAGAAAATATGCTTCTAGATGCATATGGGAATCTGAAAGTTTCTGATTTTGGCTTGAGTGCCCTGCCTAAGCAAATCAGGGCGGATGGGCTACTTCACACTACTTGTGGAACACCCAATTATGTTGCTCCTGAGGTAATCAATGATAAAGGTTA
CGATGGTGCCACTGCAGACTTGTGGTCGTGTGGTGTTATCCTGTTCGTTTTGATGGCAGGTTACTTGCCTTTTGAGGACTCAAATCTGATGACACTATACAAAAAAATTCATAAAGCCGATTTTGCCTTTCCTTCATGGTTTTCTTCAACTGCAAAAAATCTGATTTCACGAATTTTGGATCCAAACCCAAAGACACGTA
TCACAGTACCTGAGATATTAGAGAATGAATGGTTTAAGAAAGGTTACACACCACCCAAGTTCCAAGAAGATGAGGATATAAATCTGGATGACGTGGATGCTGTTTTTAATGACTCAGAGGACCATCTTGTCACAGAGAAGAAAGAGACACATCCCGTGTTAATGAATGCGTTTGAACTTATCTCCACGTCACAAGGTCTC
AACCTTGGCAATTTGTTTGAGAACCATATGGGCCTGGTTAAGCGAGAAACAAGGTTCACATCCAAACACCCCGCGAAAGAGATAATATCAAAAATTGAAGAAGCTGCCGGACCCCTTGGATTCAATGTTAAAAAGAAGAATTATAAGATGAAACTGCAAGCTGCCAGGACTGGAAGAAAGGGGCACTTGTCAGTAGCTAC
AGAGATATTTGAAGTAGCCCCTTCTCTTTTCATGGTTGAGCTTCGTAAAGCTGGAGGTGACACATTGGAATTTCAGAAGTTTTACAAGAATCTTTCAAGCGGGATCAAGGACATTGTCTGGAAGTCTGAAGTGATCATGAATGAGTAGAACGAAATAGATCTAAAATCCCATTAGCTAATTAAATATGGAGATTTTACAG
ACTACTGGTATTGATTATATTTTTATTCTAATTGCTAGCTATATGGAAATTGCTTGATTAGTTTTGATTGGACATGCAGTGGACTTTTCTGCAGTTTGTGTATTAGCCCCACAAGGGTGGGAAACCAGATTAATATGGAGTGATGCTATTTGACTACAACTTTTTATATTTTCATACTAAACATGTTATGAGATAAAGAC
AAGTACTGTTCTGTAGTTTTACTTTTTTATATTTTAATACTAAACATATTATGAGATAAAGACAAGTACTGTTCTGTAGTTTTACTTTTTTATATTTTAATACTAAACATATTATGAGATAAAGACAAGTACTG
>TRINITY_DN44686_c0_g2_i5 from sample A8 / Example unspliced isoform:TTTTGGATCCAAACCCAAAGACAgtaagtgaactggtattttagttacattttgaaatgttgcagatatgttcagtttgtccactaaattaaagttctctgttcatttcaatccatctcatacttcccagccatataatttgaaaagattatagagtcatggatttttgcacatttatatcctccattggcagCGTATCA
CAGTACCTGAGATATTAGAGAATGAATGGTTTAAGAAAGGTTACACACCACCCAAGTTCCAAGAAGATGAGGATATAAATCTGGATGACGTGGATGCTGTTTTTAATGACTCAGAGGACCATCTTGTCACAGAGAAGAAAGAGACACATCCCGTGTTAATGAATGCGTTTGAACTTATCTCCACGTCACAAGGTCTCAAC
CTTGGCAATTTGTTTGAGAACCATATGGGCCTGGTTAAGCGAGAAACAAGGTTCACATCCAAACACCCCGCGAAAGAGATAATATCAAAAATTGAAGAAGCTGCCGGACCCCTTGGATTCAATGTTAAAAAGAAGAATTATAAGATGAAACTGCAAGCTGCCAGGACTGGAAGAAAGGGGCACTTGTCAGTAGCTACAGA
GATATTTGAAGTAGCCCCTTCTCTTTTCATGGTTGAGCTTCGTAAAGCTGGAGGTGACACATTGGAATTTCAGAAGTTTTACAAGAATCTTTCAAGCGGGATCAAGGACATTGTCTGGAAGTCTGAAGTGATCATGAATGAGTAGAACGAAATAGATCTAAAATCCCATTAGCTAATTAAATATGGAGATTTTACAGACT
ACTGGTATTGATTATATTTTTATTCTAATTGCTAGCTATATGGAAATTGCTTGATTAGTTTTGATTGGACATGCAGTGGACTTTTCTGCAGTTTGTGTATTAGCCCCACAAGGGTGGGAAACCAGATTAATATGGAGTGATGCTATTTGACTACAACTTTTTATATTTTCATACTAAACATGTTATGAGATAAAGACAAG
TACTGTTCTGTAGTTTTACTTTTTTATATTTTAATACTAAACATATTATGAGATAAAGACAAGTACTGTTCTGTAGTTTTACTTTTTTATATTTTAATACTAAACATATTATGAGATAAAGACAAGTACTG
Intron 3 GTACTAATAT ... TATTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.67 | 11 | 2.8 | 4 |
| A2 | 0 | 6 | 2.4 | 0 |
| A3 | 17.65 | 14 | 6.6 | 3 |
| A4 | 12.5 | 7 | 0 | 1 |
| A5 | 0 | 5 | 0 | 0 |
| A6 | 6.78 | 55 | 5.4 | 4 |
| A7 | 17.86 | 69 | 12 | 15 |
| A8 | 24.1 | 63 | 6.4 | 20 |
| A9 | 11.76 | 30 | 5.4 | 4 |
| A10 | 12.96 | 47 | 6.6 | 7 |
>TRINITY_DN44686_c0_g2_i5 from sample A8 / Example spliced isoformTTTTGGATCCAAACCCAAAGACAGTAAGTGAACTGGTATTTTAGTTACATTTTGAAATGTTGCAGATATGTTCAGTTTGTCCACTAAATTAAAGTTCTCTGTTCATTTCAATCCATCTCATACTTCCCAGCCATATAATTTGAAAAGATTATAGAGTCATGGATTTTTGCACATTTATATCCTCCATTGGCAGCGTATCA
CAGTACCTGAGATATTAGAGAATGAATGGTTTAAGAAAGGTTACACACCACCCAAGTTCCAAGAAGATGAGGATATAAATCTGGATGACGTGGATGCTGTTTTTAATGACTCAGAGGACCATCTTGTCACAGAGAAGAAAGAGACACATCCCGTGTTAATGAATGCGTTTGAACTTATCTCCACGTCACAAGGTCTCAAC
CTTGGCAATTTGTTTGAGAACCATATGGGCCTGGTTAAGCGAGAAACAAGGTTCACATCCAAACACCCCGCGAAAGAGATAATATCAAAAATTGAAGAAGCTGCCGGACCCCTTGGATTCAATGTTAAAAAGAAGAATTATAAGATGAAACTGCAAGCTGCCAGGACTGGAAGAAAGGGGCACTTGTCAGTAGCTACAGA
GATATTTGAAGTAGCCCCTTCTCTTTTCATGGTTGAGCTTCGTAAAGCTGGAGGTGACACATTGGAATTTCAGAAGTTTTACAAGAATCTTTCAAGCGGGATCAAGGACATTGTCTGGAAGTCTGAAGTGATCATGAATGAGTAGAACGAAATAGATCTAAAATCCCATTAGCTAATTAAATATGGAGATTTTACAGACT
ACTGGTATTGATTATATTTTTATTCTAATTGCTAGCTATATGGAAATTGCTTGATTAGTTTTGATTGGACATGCAGTGGACTTTTCTGCAGTTTGTGTATTAGCCCCACAAGGGTGGGAAACCAGATTAATATGGAGTGATGCTATTTGACTACAACTTTTTATATTTTCATACTAAACATGTTATGAGATAAAGACAAG
TACTGTTCTGTAGTTTTACTTTTTTATATTTTAATACTAAACATATTATGAGATAAAGACAAGTACTGTTCTGTAGTTTTACTTTTTTATATTTTAATACTAAACATATTATGAGATAAAGACAAGTACTG
>TRINITY_DN44686_c0_g2_i3 from sample A8 / Example unspliced isoform:TCACATGTTGGATGACACATTTTCGCATGCTCCCTTCCCCGGTGTAACCCGTAATTGTTCCTTGAAACGAACGAGGACAACGTCATTTGCATCTGCGGTGTACAACAGACGAAATATTGAGTTGGCTTTATGTAAAGTCTAGTGCCACTGTTATGTGTCAGAGATTAGTCTAGAGGCTGGGTATGAGTATCGGCGGAAGT
GGAGGTGGCTACGATTTGGGATTTTTCATTCATGGGATGAATGGGTCGTGTTTGGGTTCTGAATTCCTGGAAGGTACTATATGTATCCGTTGTTTAAAGGCATAATAGCATCCAGAAATATGTTGAGCTTGGCAATTAGAAGTTGTTATCTGTGTGTGTTTGGATTTGGACTCTGAGGAACCACTGAGAAGGTGCTGCTG
CAATTTATTTTCCAATTTTCGGTTTCATTATTAGCAAGATGAATGTCGTAAAGTCACAGGTCTGGCAGCCTTGTAATCGTAAGCGTTAGCATACACAGAGGGAGGGACAAAGATCTACAGGCGAAGCCATCCTGTCCTATCCAGTCCTTTGAGTGTAGATCCAGAGGAAATCAATCCAGTCAAAAGTGAGGTTGTTTTTT
CTTCTTTGCACTGTGTGTGTATTGAGAGGGAATGAGCTTACAGAGCGTAAGAACTCGTGTGGGTAAGTATGAGTTGGGACGCACCCTTGGTGAGGGTAACTTTGCCAAGGTCAAATTTGCTAAAAATATGGAGACTGGTGAGATTGTGGCCATCAAGATCCTGGATAAAGAAAAACTCCTCAAACACAAGATGGTGGAGC
AGATGAAGCGAGAAATATCTACCATGAAGTTGATCAAGCATCCAAATGTCATACGGTTACATGAGGTCATGGCTAGTAAAATAAAGATCTATATTGTACTCGAGTTTGTAACTGGAGGCGAGCTTTTTGATAAAATTGCCAATCAGGGAAGATTGAGAGAAGATGAAGCAAGAAGATACTTCCAGCAACTCATCAATGCT
GTGGACTACTGCCATAGTAGGGGTGTGTTCCATAGAGACTTGAAGCCAGAAAATATGCTTCTAGATGCATATGGGAATCTGAAAGTTTCTGATTTTGGCTTGAGTGCCCTGCCTAAGCAAATCAGGGCGGATGGGCTACTTCACACTACTTGTGGAACACCCAATTATGTTGCTCCTGAGGTAATCAATGATAAAGGTTA
CGATGGTGCCACTGCAGACTTGTGGTCGTGTGGTGTTATCCTGTTCGTTTTGATGGCAGGTTACTTGCCTTTTGAGGACTCAAATCTGATGACACTATACAAAAAAATTCATAAAGCCGATTTTGCCTTTCCTTCATGGTTTTCTTCAACTGCAAAAAATCTGATTTCACGAATTTTGGATCCAAACCCAAAGACACGTA
TCACAGTACCTGAGATATTAGAGAATGAATGGTTTAAGAAAGGTTACACACCACCCAAGTTCCAAGAAGATGAGGATATAAATCTGGATGACGTGGATGCTGTTTTTAATGACTCAGAGGACCATCTTGTCACAGAGAAGAAAGAGACACATCCCGTGTTAATGAATGCGTTTGAACTTATCTCCACGTCACAAGGTCTC
AACCTTGGCAATTTGTTTGAGAACCATATGGGCCTGGTTAAGCGAGAAACAAGGTTCACATCCAAACACCCCGCGAAAGAGATAATATCAAAAATTGAAGAAGCTGCCGGACCCCTTGGATTCAATGTTAAAAAGAAGAATTATAAGATGAAACTGCAAGCTGCCAGGACTGGAAGAAAGGGGCACTTGTCAGTAGCTAC
AGAGgtactaatatagttgataaatatgtgctcattgcattcaaggactggatatcaattacaagtcctataactgtaaacatccttgcctcggccctcaagtctgagcttgtctatttttcagATATTTGAAGTAGCCCCTTCTCTTTTCATGGTTGAGCTTCGTAAAGCTGGAGGTGACACATTGGAATTTCAGAAGT
TTTACAAGAATCTTTCAAGCGGGATCAAGGACATTGTCTGGAAGTCTGAAGTGATCATGAATGAGTAGAACGAAATAGATCTAAAATCCCATTAGCTAATTAAATATGGAGATTTTACAGACTACTGGTATTGATTATATTTTTATTCTAATTGCTAGCTATATGGAAATTGCTTGATTAGTTTTGATTGGACATGCAGT
GGACTTTTCTGCAGTTTGTGTATTAGCCCCACAAGGGTGGGAAACCAGATTAATATGGAGTGATGCTATTTGACTACAACTTTTTATATTTTCATACTAAACATGTTATGAGATAAAGACAAGTACTGTTCTGTAGTTTTACTTTTTTATATTTTAATACTAAACATATTATGAGATAAAGACAAGTACTGTTCTGTAGT
TTTACTTTTTTATATTTTAATACTAAACATATTATGAGATAAAGACAAGTACTG