NA ----> NA

Intron 1 GTAGAAGCCA ... AGTCGACCAG

Found issues: Low number of reads

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	1	0
A2	100	0	2	4
A3	69.23	2	7	2
A4	-1	0	0	0
A5	-1	0	0	0
A6	83.33	1	5	5
A7	73.33	2	6	5
A8	100	0	1	1
A9	100	0	2	4
A10	50	4	8	0

>TRINITY_DN33229_c0_g1_i2 from sample A9 / Example spliced isoform

ATTAATGTGAAGCATTTTCTGGCATTGTTCGTCTTCATGTCTTTACTTATTTTCTCCATATATCTTTTCTGATATGTTGTTTAAAAATGTTATCAAAGCGGGTAAAGATAACAGAGGAAGAAGAATGAAAGATCTAGTGGAGACTCTGATTCCTTGAAGATCGGCGTGGATTGTGAAGGTGCACAGAGAAAGGAGAGATG
ACATTGAACTGTTGATAGTGTTCAAGAAGAGAGGCCTTTTTGCCCGAGATTTGCCCCAAAACAGTCAACAAACACTATCAAAGAAATTTGGTTGATTCCAAC

>TRINITY_DN33229_c0_g1_i1 from sample A9 / Example unspliced isoform:

ATTAATGTGAAGCATTTTCTGGCATTGTTCGTCTTCATGTCTTTACTTATTTTCTCCATATATCTTTTCTGATATGTTGTTTAAAAATGTTATCAAAGCGGGTAAAGATAACAGAGGAAGAAGAATGAAAGATCTAGTGGAGACTCTGATTCCTTGAAGATCGGCGTGGATTGTGAAGGTGCACAGAGAAAGGAGAGATG
ACATTGAACTGTTGATAGTGTTCAAGAAGAGAGGCCTTTTTGCCCGAGATTTGCCCCAAAACAGTCAACAAACACTATCAAAGgtagaagccacctgtatactctacattattaaaaaaatcctacagttcaaatgttttgtgaagaattgatacataaatttgcagtcgaccagAAATTTGGTTGATTCCAACAGCCGA
GGAACTGTAGCACCCGAGTGGAGCTGTCTTTTTTGCATAAGAGGAGAATTGAAGTCGTCGAATTAATTAGCCCTGAAAGAAAATTCGTCAAGATTGGTCCAAAATAAAATCTGGGTGGAAATTTGAAAAGTGGAATGCAGCCAATCCGATGTGAATAGAAGACCTGCATTGAAAAATACGCTTGAGAGAGAACCATAGGT
GTCTGCAATTTTTTGGTATGTGATGATCTATGTGCAGCCTTTTTTTATAAAATTCG

Intron 2 GTAGAAGCCA ... ATTCCAACAG

Found issues: Low number of reads

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	1	0
A2	100	0	2	4
A3	69.23	2	7	2
A4	-1	0	0	0
A5	-1	0	0	0
A6	60	4	5	7
A7	84.62	1	6	5
A8	33.33	2	1	1
A9	44.44	5	2	6
A10	50	4	8	0

>TRINITY_DN35835_c0_g1_i2 from sample A8 / Example spliced isoform

CTGGCATTGTTCGTCTTCATGTCTTTACTTATTTTCTCCATATATCTTTTCTGATATGTTGTTTAACAATGTTATCAAAGCGGGTGAAGATAACAGAGGAAGAAGAACGAAAGATCTGGTGGAGGCTCAGATTCCTTGAAGATCGGCGTGGATTGTGAAGGTGCACAGAGAAAGGAGAGATGACATTGAACTGTTGATAG
TGTTCAAGAAGAGAGGCCTTTTCGCCCGAGATTTGCCCCAAAACAGTCAACAAACACTATCAAAGCCGAGGAACTGTAGCACCCGAGTGGAGCTGTCTTTTTTGCATAAGAGGAGAATTGAAGTCGTCGAATTAATTAGCCCTGAAAGAAAATTCGTCCAGATTGGTCCAAAATAAAATCTGGGTGGAAATTTGAAAAGT
GGAATGCAGCCAATCCGATGTAAATAGAAGACCTGCATTGAAAAATACGCTTGAGAGAGAACCATAGGTGTCTGCAATTTTTTGGTATGTGATGATCTATGTGCAGCCTTTTTTTATAAAATTCGAAACAAAAAATTAATGTGTTGTCTAAGAATCGATTTAGAATAGCCTCTCCAAGTCCAATTGAAGCAGTCCAAGAT
ATCGCACATATTTCCCAATCTTTTTGCAAGTTTGGTTTAAATAGCGAGATTGTAAAGATCCGGTAGAAGCAAGATCTTGAATATTCAAAAGAAGACCCGCAACTTGATCCGGTAGAAGCGAGATCTTGAAGATTCAAAGGAAGAGCCGCAACTTGAAGAAAAAGAGAAGACAAAGCATTTGTTTTGAGTAATTAAAGAAA
TTTGAACTCCAATTAATTGAAAGCGTGAGATGAATATATATTCAGCCTGAAGACAGGGTGTGAAATGGATGGATATATTGTAGATCCGGGTGTGAGTTCATAAGTTCATGTATGTAAATCAAGGCATAGAGTGC

>TRINITY_DN35835_c0_g1_i1 from sample A8 / Example unspliced isoform:

CTGGCATTGTTCGTCTTCATGTCTTTACTTATTTTCTCCATATATCTTTTCTGATATGTTGTTTAACAATGTTATCAAAGCGGGTGAAGATAACAGAGGAAGAAGAACGAAAGATCTGGTGGAGGCTCAGATTCCTTGAAGATCGGCGTGGATTGTGAAGGTGCACAGAGAAAGGAGAGATGACATTGAACTGTTGATAG
TGTTCAAGAAGAGAGGCCTTTTCGCCCGAGATTTGCCCCAAAACAGTCAACAAACACTATCAAAGgtagaagccacctgtatactctacattattaaaaaaatcctacagttcaaatgttttgggaagaattgatacataaatttgcagtcgaccacaaatttggttgattccaacagCCGAGGAACTGTAGCACCCGAG
TGGAGCTGTCTTTTTTGCATAAGAGGAGAATTGAAGTCGTCGAATTAATTAGCCCTGAAAGAAAATTCGTCCAGATTGGTCCAAAATAAAATCTGGGTGGAAATTTGAAAAGTGGAATGCAGCCAATCCGATGTAAATAGAAGACCTGCATTGAAAAATACGCTTGAGAGAGAACCATAGGTGTCTGCAATTTTTTGGTA
TGTGATGATCTATGTGCAGCCTTTTTTTATAAAATTCGAAACAAAAAATTAATGTGTTGTCTAAGAATCGATTTAGAATAGCCTCTCCAAGTCCAATTGAAGCAGTCCAAGATATCGCACATATTTCCCAATCTTTTTGCAAGTTTGGTTTAAATAGCGAGATTGTAAAGATCCGGTAGAAGCAAGATCTTGAATATTCA
AAAGAAGACCCGCAACTTGATCCGGTAGAAGCGAGATCTTGAAGATTCAAAGGAAGAGCCGCAACTTGAAGAAAAAGAGAAGACAAAGCATTTGTTTTGAGTAATTAAAGAAATTTGAACTCCAATTAATTGAAAGCGTGAGATGAATATATATTCAGCCTGAAGACAGGGTGTGAAATGGATGGATATATTGTAGATCC
GGGTGTGAGTTCATAAGTTCATGTATGTAAATCAAGGCATAGAGTGC