sp|Q5ZDJ6|C3H8_ORYSJ ----> Zinc finger CCCH domain-containing protein 8
Intron 1 GTTGTATTCA ... CTATTTGTAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 52.94 | 4 | 5 | 4 |
| A8 | 0 | 1 | 0 | 0 |
| A9 | 33.33 | 3 | 2 | 1 |
| A10 | 75 | 1 | 3 | 3 |
>TRINITY_DN39011_c0_g2_i2 from sample A7 / Example spliced isoformCTTCAACTGGAATTATAATTTTTCATCCGTTGTGTGGCTCTAGGTGCCAACTGTTGCTTCAAGCAGTGGAGCCCTGCCAGAGAGGCCACGCGAGCCCGAGTATCCTGTCAGTTAAACTGGGTCAATATTTGCATTTTGTGCTAGCTGACATCCTTTTGATATTGCTATAATTTAGCTTTTGTTTTGTGTTGTTAGATTGG
ATCTCATACTATTGAACTCCGTAATATATTCAGACTGGCAAATGAAAATTTGGTGCAAAATACAAGTTCCATAATCCAAAAGATAGGCTGGGAACTCTAAAATCAGACGAGATTGTTGTTGGAAGCGAGGTGAAACCTGCCGCTTCCGATTTTGTTCCACTACCAGAGAGACCTGGAGAGCCTGAGTGTGCTGTATCTGT
AAGTATGGTGCCAAATGCAAGTTCGATCATCCAAAAGACAAGGAGGATCTTTAAAAACATCAAAGCATAAAGGGATGGGTATTCTGCCATAACTGGAGGAATGGAGGAACGAGGGATTTCTGGAGTTGCAAATGGGAAAATAGAGAAGAACTCACTGCTATTAAGCCTGCAACCACGCATCACAGTATCCTTGAGCTTTG
TGCTTCATTATTTTGTTTCTTGCGCAATAGATCCGCCCAAGACTGGTTCCAGATTTTTGTGTCCTATTTTTAAATAATTTTGTTCCAGAGCTGCTATTATTGGGATGGAACATATTTATAAATCATAATAAAGATGAACCACACCACTGTTCAGTTATTGATCAATTGCTAGTTTCAACTTTCTTTTCAGTTGATAGTTC
TTGCCTGCAGGTTCAGTTGTTGCGAG
>TRINITY_DN39011_c0_g2_i1 from sample A7 / Example unspliced isoform:CTTCAACTGGAATTATAATTTTTCATCCGTTGTGTGGCTCTAGGTGCCAACTGTTGCTTCAAGCAGTGGAGCCCTGCCAGAGAGGCCACGCGAGCCCGAGTATCCTGTCAGTTAAACTGGGTCAATATTTGCATTTTGTGCTAGCTGACATCCTTTTGATATTGCTATAATTTAGCTTTTGTTTTGTGTTGTTAGATTGG
ATCTCATACTATTGAACTCCGTAATATATTCAGACTGGCAAATGAAAATTTGGTGCAAAATACAAGTTCCATAATCCAAAAGATAGGCTGGGAACTCTAAAATCAGACGAGATTGTTGTTGGAAGCGAGgttgtattcaattcaatctgtattttcatccctttttttggtcttccatcttataagatatgtaattattc
ctatttgtagGTGAAACCTGCCGCTTCCGATTTTGTTCCACTACCAGAGAGACCTGGAGAGCCTGAGTGTGCTGTATCTGTAAGTATGGTGCCAAATGCAAGTTCGATCATCCAAAAGACAAGGAGGATCTTTAAAAACATCAAAGCATAAAGGGATGGGTATTCTGCCATAACTGGAGGAATGGAGGAACGAGGGATTT
CTGGAGTTGCAAATGGGAAAATAGAGAAGAACTCACTGCTATTAAGCCTGCAACCACGCATCACAGTATCCTTGAGCTTTGTGCTTCATTATTTTGTTTCTTGCGCAATAGATCCGCCCAAGACTGGTTCCAGATTTTTGTGTCCTATTTTTAAATAATTTTGTTCCAGAGCTGCTATTATTGGGATGGAACATATTTAT
AAATCATAATAAAGATGAACCACACCACTGTTCAGTTATTGATCAATTGCTAGTTTCAACTTTCTTTTCAGTTGATAGTTCTTGCCTGCAGGTTCAGTTGTTGCGAG
Intron 2 GTAAGTTGTT ... GTCAAGACAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 50 | 2 | 0 | 2 |
| A7 | 10 | 9 | 0 | 1 |
| A8 | 50 | 7 | 0 | 7 |
| A9 | 40 | 3 | 0 | 2 |
| A10 | 14.29 | 6 | 0 | 1 |
>TRINITY_DN35934_c0_g1_i1 from sample A8 / Example spliced isoformCAGACTGGCAAATGAAAATTTGGTGCAAAATACAAGTTCCATAATCCAAAAGATAGGCTGGGAACTCTAAAATCAGACGAGATTGTTGTTGGAAGCGAGGTTGTATTCAATTCAATCTGTATTTTCATCCCTTTTTTTGGTCTTCCATCTTATAAGATATGTAATTATTCCTATTTGTAGGTGAAACCTGCCGCTTCCGA
TTTTGTTCCACTACCAGAGAGACCTGGAGAGCCTGAGTGTGCTGTATCTGTAAGTATGGTGCCAAATGCAAGTTCGATCATCCAAAAGACAAGGAGGATCTTTAAAAACATCAAAGCATAAAGGGATGGGTATTCTGCCATAACTGGAGGAATGGAGGAACGAGGGATTTCTGGAGTTGCAAATGGGAAAATAGAGAAGA
ACTCACTGCTATTAAGCCTGCAACCACGCATCACAGTATCCTTGAGCTTTGTGCTTCATTATTTTGTTTCTTGCGCAATAGATCCGCCCAAGACTGGTTCCAGATTTTTGTGTCCTATTTTTAAATAATTTTGTTCCAGAGCTGCTATTATTGGGATGGAACATATTTATAAATCATAATAAAGATGAACCACACCACTG
TTCAGTTATTGATCAATTGCTAGTTTCAACTTTCTTTTCAGTTGAAAGTTCTTGCCTGCAGGTTCAGTTGTTGCGAGTCAAGGTTAAAATCATAGTACTCTGTTTCACACTTGCATAGTCAGGCAAAGTTCAGAACAAGGAAACTCTTGTTTGTACTTGCAAATGGATAGCTTAAAACATAGAAGCAGATTCTCCTGCCA
AATATCATAATTCTTCATGTACAACTGTACAAGTGATGCTTGAAAGTTACTTGTCCAGTGGGTTTTCTGCCAATATAGCTTTTCTGATGCA
>TRINITY_DN35934_c0_g1_i4 from sample A8 / Example unspliced isoform:GTTATATTTTGCTTTACGTTTTTGCAGTAGCTTATGGCACCCCTACAGATTGGCATCATTGGTTGTACCAAAATTTTCCTATCACATTGTGCTCCCTGGCAATAGGTTTAACAAGTTTTCTAAATGAAATTTTTAATGCAATATTGAAATAAGTGTGACTGAATCTGCATCCAATATGGCATATTTGTTATGAATTATTC
TTTACAATGTTAGTCATGTTAGTCATACTTAACTGCAATTCAGGCATACTTCTTGGTATGCTCTGTCATTCAGGCTTTGATGTGTGCTTGAGTTTAAATGTAACAAATGAATCAGATGAATTTTCTGTAGGATATATACAGGAATGCTTTAAAGTTCCGGAATTTGCAATCCTATAAGTTAAGTAGTGAGACTGTTCATT
TTTAAAATATGTAATAACTTCAACTGGAATTATAATTTTTCATCCGTTGTGTGGCTCTAGGTGCCAACTGTTGCTTCAAGCAGTGGAGCCCTGCCAGAGAGGCCACGCGAGCCCGAGTATCCTGTGAAACCTGCCGCTTCCGATTTTGTTCCACTACCAGAGAGACCTGGAGAGCCTGAGTGTGCTgtaagttgttcagt
gatgatttcagtgctttcataatatttttctgtttctttactaatcatattacatttttcattttgaactgttggtttattggatttgttgatgtggaactcagttttttgtcaagacagGTATCTGTAAGTATGGTGCCAAATGCAAGTTCGATCATCCAAAAGACAAGGAGGATCTTTAAAAACATCAAAGCATAAAG
GGATGGGTATTCTGCCATAACTGGAGGAATGGAGGAACGAGGGATTTCTGGAGTTGCAAATGGGAAAATAGAGAAGAACTCACTGCTATTAAGCCTGCAACCACGCATCACAGTATCCTTGAGCTTTGTGCTTCATTATTTTGTTTCTTGCGCAATAGATCCGCCCAAGACTGGTTCCAGATTTTTGTGTCCTATTTTTA
AATAATTTTGTTCCAGAGCTGCTATTATTGGGATGGAACATATTTATAAATCATAATAAAGATGAACCACACCACTGTTCAGTTATTGATCAATTGCTAGTTTCAACTTTCTTTTCAGTTGAAAGTTCTTGCCTGCAGGTTCAGTTGTTGCGAGTCAAGGTTAAAATCATAGTACTCTGTTTCACACTTGCATAGTCAGG
CAAAGTTCAGAACAAGGAAACTCTTGTTTGTACTTGCAAATGGATAGCTTAAAACATAGAAGCAGATTCTCCTGCCAAATATCATAATTCTTCATGTACAACTGTACAAGTGATGCTTGAAAGTTACTTGTCCAGTGGGTTTTCTGCCAATATAGCTTTTCTGATGCA